Wall clock time and date at job start Tue Mar 31 2020 22:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86791 * 120.00082 * 2 1 4 4 H 1.48499 * 109.47017 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47000 * 300.00053 * 3 2 1 6 6 H 1.48500 * 109.47497 * 60.00190 * 3 2 1 7 7 C 1.38816 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00084 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99945 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99931 * 180.02562 * 9 7 2 11 11 C 1.53033 * 109.46091 * 205.00058 * 10 9 7 12 12 C 1.53196 * 109.31646 * 178.62620 * 11 10 9 13 13 N 1.46928 * 108.76857 * 54.63486 * 12 11 10 14 14 C 1.34774 * 120.62675 * 126.37717 * 13 12 11 15 15 O 1.21552 * 120.00317 * 3.78281 * 14 13 12 16 16 C 1.47860 * 120.00045 * 183.79139 * 14 13 12 17 17 C 1.39609 * 120.11409 * 309.36480 * 16 14 13 18 18 C 1.37975 * 119.98816 * 180.27294 * 17 16 14 19 19 C 1.38267 * 120.21725 * 359.97438 * 18 17 16 20 20 C 1.38906 * 120.22299 * 0.02562 * 19 18 17 21 21 N 1.40223 * 119.98783 * 180.02562 * 20 19 18 22 22 C 1.36567 * 125.66774 * 179.67023 * 21 20 19 23 23 C 1.34848 * 108.20119 * 179.86708 * 22 21 20 24 24 C 1.40937 * 107.47030 * 0.38646 * 23 22 21 25 25 C 1.34852 * 107.46321 * 359.75907 * 24 23 22 26 26 C 1.38580 * 120.01553 * 359.97438 * 20 19 18 27 27 C 1.46928 * 118.74180 * 306.64044 * 13 12 11 28 28 C 1.52766 * 109.00265 * 53.31759 * 27 13 12 29 29 H 0.96997 * 119.99768 * 359.97438 * 1 2 3 30 30 H 0.96997 * 120.00067 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.45696 * 324.97746 * 10 9 7 32 32 H 1.09001 * 109.49746 * 58.67521 * 11 10 9 33 33 H 1.09001 * 109.49817 * 298.58245 * 11 10 9 34 34 H 1.08994 * 109.58390 * 294.85162 * 12 11 10 35 35 H 1.08993 * 109.70495 * 174.48874 * 12 11 10 36 36 H 1.08006 * 120.00677 * 0.29921 * 17 16 14 37 37 H 1.08003 * 119.88801 * 179.97438 * 18 17 16 38 38 H 1.08000 * 119.88494 * 179.97438 * 19 18 17 39 39 H 1.08006 * 125.89850 * 0.02562 * 22 21 20 40 40 H 1.08005 * 126.26162 * 180.15065 * 23 22 21 41 41 H 1.07994 * 126.26690 * 179.77409 * 24 23 22 42 42 H 1.08004 * 125.89606 * 179.97438 * 25 24 23 43 43 H 1.08000 * 120.11064 * 179.97438 * 26 20 19 44 44 H 1.08999 * 109.58610 * 173.14608 * 27 13 12 45 45 H 1.08995 * 109.58981 * 293.57826 * 27 13 12 46 46 H 1.09001 * 109.56269 * 185.55348 * 28 27 13 47 47 H 1.08991 * 109.36191 * 65.49655 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 6 1.1804 -4.7523 -0.6103 12 6 1.9617 -6.0696 -0.6402 13 7 2.4409 -6.3659 0.7168 14 6 2.1720 -7.5527 1.2961 15 8 1.5873 -8.4156 0.6708 16 6 2.5882 -7.8051 2.6922 17 6 3.9037 -7.5548 3.0872 18 6 4.2906 -7.7966 4.3893 19 6 3.3792 -8.2862 5.3066 20 6 2.0681 -8.5384 4.9233 21 7 1.1478 -9.0343 5.8578 22 6 -0.1653 -9.3161 5.6099 23 6 -0.7204 -9.7738 6.7504 24 6 0.2818 -9.7670 7.7413 25 6 1.4140 -9.3104 7.1685 26 6 1.6693 -8.2989 3.6179 27 6 3.2137 -5.3416 1.4325 28 6 2.4229 -4.0345 1.4370 29 1 -0.4850 0.8400 0.0004 30 1 0.3555 -2.3881 -0.0005 31 1 2.9685 -3.5505 -0.5904 32 1 0.9015 -4.4716 -1.6260 33 1 0.2812 -4.8761 -0.0068 34 1 2.8120 -5.9748 -1.3154 35 1 1.3116 -6.8749 -0.9820 36 1 4.6182 -7.1716 2.3737 37 1 5.3088 -7.6028 4.6930 38 1 3.6880 -8.4739 6.3244 39 1 -0.6710 -9.1958 4.6632 40 1 -1.7464 -10.0847 6.8815 41 1 0.1645 -10.0718 8.7706 42 1 2.3667 -9.1844 7.6614 43 1 0.6504 -8.4949 3.3181 44 1 3.3873 -5.6655 2.4587 45 1 4.1682 -5.1862 0.9297 46 1 3.0286 -3.2430 1.8784 47 1 1.5122 -4.1652 2.0212 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996780399.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:50 Heat of formation + Delta-G solvation = 49.397444 kcal Electronic energy + Delta-G solvation = -28597.978596 eV Core-core repulsion = 24746.352859 eV Total energy + Delta-G solvation = -3851.625737 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.64113 -41.57721 -39.57111 -38.67196 -36.21671 -34.50413 -33.74258 -32.73114 -31.92886 -31.02339 -29.84227 -29.81220 -26.88610 -25.31571 -24.58982 -23.99615 -23.68172 -22.09068 -21.18189 -21.00527 -20.36188 -19.42391 -19.01851 -17.96362 -17.25567 -17.08213 -16.74805 -16.60885 -15.99039 -15.80564 -15.52380 -15.43036 -15.34922 -15.03838 -14.77457 -14.70065 -14.48797 -14.19825 -14.01643 -13.56273 -13.29060 -13.27497 -13.22045 -13.08371 -12.88249 -12.80748 -12.64830 -12.47224 -12.21854 -12.10998 -12.02994 -11.71611 -11.34238 -11.15150 -10.97462 -10.74421 -10.18894 -9.76970 -9.25090 -9.07429 -8.98543 -7.93404 -5.22309 -0.28198 -0.03657 1.31213 1.48479 1.48852 1.50645 1.58732 1.80664 1.95804 2.02448 2.56676 2.64567 3.23454 3.40518 3.63502 3.77185 3.82003 3.85059 3.99476 4.01770 4.05764 4.11108 4.15375 4.25037 4.32818 4.37270 4.44381 4.55851 4.60171 4.67784 4.75623 4.76210 4.79778 4.83505 4.94246 4.99013 5.04743 5.14041 5.22401 5.26228 5.28571 5.33044 5.45830 5.53357 5.57539 5.62093 5.93381 6.17829 6.25293 6.28554 6.42120 6.93723 7.34088 8.09664 8.32342 9.30626 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013116 B = 0.002496 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.243636 B =11214.143437 C =11866.009303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.081 4.081 3 Si 0.971 3.029 4 H -0.261 1.261 5 H -0.297 1.297 6 H -0.297 1.297 7 C -0.231 4.231 8 H 0.082 0.918 9 N -0.739 5.739 10 C 0.173 3.827 11 C -0.129 4.129 12 C 0.122 3.878 13 N -0.595 5.595 14 C 0.558 3.442 15 O -0.579 6.579 16 C -0.109 4.109 17 C -0.101 4.101 18 C -0.080 4.080 19 C -0.117 4.117 20 C 0.123 3.877 21 N -0.405 5.405 22 C -0.042 4.042 23 C -0.199 4.199 24 C -0.204 4.204 25 C -0.019 4.019 26 C -0.112 4.112 27 C 0.106 3.894 28 C -0.141 4.141 29 H 0.249 0.751 30 H 0.369 0.631 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.045 0.955 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.159 0.841 37 H 0.180 0.820 38 H 0.163 0.837 39 H 0.164 0.836 40 H 0.153 0.847 41 H 0.161 0.839 42 H 0.196 0.804 43 H 0.119 0.881 44 H 0.107 0.893 45 H 0.099 0.901 46 H 0.070 0.930 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.144 -20.560 13.187 26.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.273 4.273 3 Si 0.800 3.200 4 H -0.185 1.185 5 H -0.225 1.225 6 H -0.225 1.225 7 C -0.363 4.363 8 H 0.100 0.900 9 N -0.378 5.378 10 C 0.065 3.935 11 C -0.168 4.168 12 C 0.000 4.000 13 N -0.326 5.326 14 C 0.347 3.653 15 O -0.460 6.460 16 C -0.112 4.112 17 C -0.120 4.120 18 C -0.098 4.098 19 C -0.137 4.137 20 C 0.030 3.970 21 N -0.077 5.077 22 C -0.168 4.168 23 C -0.223 4.223 24 C -0.227 4.227 25 C -0.145 4.145 26 C -0.133 4.133 27 C -0.017 4.017 28 C -0.182 4.182 29 H 0.057 0.943 30 H 0.200 0.800 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.111 0.889 35 H 0.102 0.898 36 H 0.176 0.824 37 H 0.197 0.803 38 H 0.180 0.820 39 H 0.181 0.819 40 H 0.170 0.830 41 H 0.179 0.821 42 H 0.213 0.787 43 H 0.137 0.863 44 H 0.125 0.875 45 H 0.117 0.883 46 H 0.089 0.911 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 11.189 -20.771 12.631 26.762 hybrid contribution -1.096 1.206 -0.287 1.654 sum 10.094 -19.565 12.345 25.240 Atomic orbital electron populations 1.69838 1.06783 1.25814 1.60047 1.25574 0.96296 1.01186 1.04201 0.85102 0.78528 0.79981 0.76356 1.18471 1.22501 1.22471 1.19684 0.91573 0.84924 1.40124 0.89982 1.42696 1.05377 1.01148 1.88592 1.20435 0.94446 0.84545 0.94076 1.22072 0.98482 0.94601 1.01628 1.21603 0.99457 0.96324 0.82651 1.48154 1.53363 1.14352 1.16690 1.18639 0.78227 0.81843 0.86613 1.90756 1.44033 1.45613 1.65567 1.19597 0.96146 1.03157 0.92325 1.21687 0.93846 0.98258 0.98180 1.21418 1.01233 0.95856 0.91286 1.21394 0.89972 0.99817 1.02509 1.17917 0.90668 0.99946 0.88427 1.41792 1.08281 1.48772 1.08895 1.22198 0.84124 1.08799 1.01702 1.21329 1.00928 1.07137 0.92939 1.21357 0.92792 1.07812 1.00775 1.22476 1.02270 1.07144 0.82636 1.20682 1.00144 1.00826 0.91615 1.22162 0.94563 0.86118 0.98809 1.22388 0.99715 0.96761 0.99346 0.94250 0.79996 0.92610 0.90606 0.93584 0.88854 0.89822 0.82394 0.80261 0.81973 0.81884 0.82972 0.82136 0.78699 0.86289 0.87517 0.88260 0.91150 0.94398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.41 13.06 21.65 0.28 -59.13 16 2 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 3 Si 0.97 45.09 29.55 68.60 2.03 47.12 16 4 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 7 C -0.23 -12.27 9.93 84.03 0.83 -11.44 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.74 -35.95 5.12 -322.81 -1.65 -37.61 16 10 C 0.17 6.28 2.73 45.02 0.12 6.41 16 11 C -0.13 -4.14 5.55 30.67 0.17 -3.97 16 12 C 0.12 3.25 6.43 86.36 0.56 3.81 16 13 N -0.59 -15.33 2.98 -823.13 -2.45 -17.78 16 14 C 0.56 15.83 7.24 86.79 0.63 16.46 16 15 O -0.58 -20.62 16.47 -3.88 -0.06 -20.69 16 16 C -0.11 -2.49 5.00 -20.10 -0.10 -2.59 16 17 C -0.10 -1.53 7.37 22.54 0.17 -1.36 16 18 C -0.08 -0.85 10.02 22.21 0.22 -0.63 16 19 C -0.12 -1.56 9.45 22.44 0.21 -1.35 16 20 C 0.12 2.47 6.61 38.04 0.25 2.72 16 21 N -0.41 -8.42 2.97 -346.79 -1.03 -9.45 16 22 C -0.04 -0.93 10.73 83.18 0.89 -0.03 16 23 C -0.20 -3.96 10.86 22.15 0.24 -3.72 16 24 C -0.20 -3.53 10.86 22.15 0.24 -3.29 16 25 C -0.02 -0.32 10.73 83.18 0.89 0.57 16 26 C -0.11 -2.68 9.14 22.65 0.21 -2.47 16 27 C 0.11 2.33 5.34 86.22 0.46 2.79 16 28 C -0.14 -4.42 5.64 30.53 0.17 -4.25 16 29 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 30 H 0.37 19.88 7.80 -92.71 -0.72 19.16 16 31 H 0.06 1.97 8.08 -2.38 -0.02 1.95 16 32 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.08 2.38 7.02 -2.39 -0.02 2.36 16 36 H 0.16 1.71 7.06 -2.91 -0.02 1.68 16 37 H 0.18 0.52 8.06 -2.91 -0.02 0.50 16 38 H 0.16 1.18 6.69 -2.91 -0.02 1.16 16 39 H 0.16 3.40 7.01 -2.91 -0.02 3.38 16 40 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 41 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 42 H 0.20 1.76 7.00 -2.91 -0.02 1.74 16 43 H 0.12 3.12 6.70 -2.91 -0.02 3.10 16 44 H 0.11 1.97 4.57 -2.39 -0.01 1.96 16 45 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 47 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -74.01 381.67 4.02 -70.00 By element: Atomic # 1 Polarization: 33.68 SS G_CDS: 0.27 Total: 33.95 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 6.64 Total: -6.42 kcal Atomic # 7 Polarization: -119.11 SS G_CDS: -4.85 Total: -123.96 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.06 Total: -20.69 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -74.01 4.02 -70.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996780399.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.396 kcal (2) G-P(sol) polarization free energy of solvation -74.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds