Wall clock time and date at job start Tue Mar 31 2020 22:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00185 * 2 1 4 4 H 1.48502 * 109.47039 * 240.00585 * 3 2 1 5 5 H 1.48504 * 109.46992 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47099 * 120.00426 * 3 2 1 7 7 C 1.38816 * 120.00287 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00511 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99268 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99374 * 180.02562 * 9 7 2 11 11 C 1.53038 * 109.46110 * 204.99869 * 10 9 7 12 12 C 1.53189 * 109.31647 * 178.61741 * 11 10 9 13 13 N 1.46925 * 108.77658 * 54.63682 * 12 11 10 14 14 C 1.34771 * 120.63614 * 126.37207 * 13 12 11 15 15 O 1.21646 * 119.99419 * 4.28729 * 14 13 12 16 16 C 1.47129 * 120.00675 * 184.29099 * 14 13 12 17 17 C 1.36630 * 126.97014 * 310.41795 * 16 14 13 18 18 N 1.34709 * 108.67846 * 180.22536 * 17 16 14 19 19 H 0.96998 * 124.72157 * 179.73649 * 18 17 16 20 20 C 1.36220 * 110.54658 * 359.55674 * 18 17 16 21 21 C 1.35745 * 108.68354 * 0.44207 * 20 18 17 22 22 C 1.48272 * 126.98546 * 179.71732 * 21 20 18 23 23 C 1.39388 * 120.12788 * 129.74413 * 22 21 20 24 24 C 1.38008 * 119.87132 * 179.77308 * 23 22 21 25 25 C 1.38327 * 120.12491 * 0.51034 * 24 23 22 26 26 C 1.38326 * 120.25880 * 359.74856 * 25 24 23 27 27 C 1.38010 * 120.12308 * 359.97438 * 26 25 24 28 28 C 1.46927 * 118.73566 * 306.64404 * 13 12 11 29 29 C 1.52758 * 109.00849 * 53.31038 * 28 13 12 30 30 H 0.96999 * 119.99849 * 359.97438 * 1 2 3 31 31 H 0.96991 * 120.00667 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.45368 * 324.96628 * 10 9 7 33 33 H 1.08998 * 109.49701 * 58.66193 * 11 10 9 34 34 H 1.09003 * 109.52536 * 298.58360 * 11 10 9 35 35 H 1.09000 * 109.58403 * 294.84436 * 12 11 10 36 36 H 1.08996 * 109.70629 * 174.49336 * 12 11 10 37 37 H 1.07998 * 125.65475 * 359.95734 * 17 16 14 38 38 H 1.08002 * 125.65714 * 180.20522 * 20 18 17 39 39 H 1.08001 * 120.06319 * 0.02562 * 23 22 21 40 40 H 1.08003 * 119.93412 * 180.26216 * 24 23 22 41 41 H 1.08002 * 119.86995 * 179.72371 * 25 24 23 42 42 H 1.08002 * 119.93955 * 180.02562 * 26 25 24 43 43 H 1.07998 * 120.06058 * 180.02562 * 27 26 25 44 44 H 1.09002 * 109.58845 * 173.14619 * 28 13 12 45 45 H 1.09004 * 109.58635 * 293.56873 * 28 13 12 46 46 H 1.08998 * 109.56442 * 185.55303 * 29 28 13 47 47 H 1.08996 * 109.36329 * 65.49884 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6567 -0.0005 11 6 1.1804 -4.7522 -0.6103 12 6 1.9619 -6.0694 -0.6404 13 7 2.4413 -6.3659 0.7164 14 6 2.1727 -7.5528 1.2957 15 8 1.5955 -8.4196 0.6670 16 6 2.5774 -7.8001 2.6885 17 6 3.8094 -7.5818 3.2373 18 7 3.7729 -7.9396 4.5355 19 1 4.5252 -7.8837 5.1453 20 6 2.5315 -8.3871 4.8734 21 6 1.7358 -8.3328 3.7749 22 6 0.3099 -8.7293 3.6859 23 6 -0.6242 -7.8603 3.1245 24 6 -1.9493 -8.2366 3.0400 25 6 -2.3529 -9.4692 3.5208 26 6 -1.4314 -10.3336 4.0839 27 6 -0.1026 -9.9702 4.1685 28 6 3.2141 -5.3416 1.4321 29 6 2.4233 -4.0346 1.4368 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 0.0002 32 1 2.9683 -3.5503 -0.5905 33 1 0.9013 -4.4715 -1.6259 34 1 0.2811 -4.8765 -0.0071 35 1 2.8121 -5.9745 -1.3158 36 1 1.3118 -6.8748 -0.9823 37 1 4.6708 -7.1916 2.7156 38 1 2.2313 -8.7318 5.8519 39 1 -0.3109 -6.8959 2.7526 40 1 -2.6732 -7.5658 2.6013 41 1 -3.3917 -9.7577 3.4566 42 1 -1.7521 -11.2949 4.4573 43 1 0.6161 -10.6460 4.6079 44 1 3.3880 -5.6655 2.4583 45 1 4.1686 -5.1861 0.9292 46 1 3.0289 -3.2431 1.8783 47 1 1.5126 -4.1654 2.0213 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997300812.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:00 Heat of formation + Delta-G solvation = 51.649454 kcal Electronic energy + Delta-G solvation = -29194.663501 eV Core-core repulsion = 25343.135418 eV Total energy + Delta-G solvation = -3851.528083 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.44096 -39.43856 -38.77344 -37.12667 -34.39682 -32.63795 -32.13290 -31.16584 -30.83710 -29.90176 -29.02589 -28.43222 -25.11213 -23.32099 -23.02934 -22.86938 -22.43657 -21.56256 -20.17670 -19.72463 -19.00335 -17.95133 -17.03728 -16.56918 -16.49647 -15.44815 -15.20703 -15.07384 -14.79452 -14.64045 -14.16209 -13.96825 -13.74727 -13.60517 -13.45809 -13.38123 -13.35431 -13.08605 -12.98013 -12.69009 -12.28104 -12.08887 -11.82636 -11.48977 -11.16746 -11.03287 -10.92239 -10.83917 -10.78648 -10.41905 -10.25520 -9.80090 -9.74499 -9.64192 -9.33522 -8.90873 -8.86924 -8.57630 -8.33193 -8.11591 -6.96451 -5.76918 -3.05884 1.21669 1.48210 1.84307 2.36380 2.96532 3.07933 3.42316 3.46559 3.48094 3.48648 3.89823 4.57738 4.63252 4.76826 4.84612 4.97215 5.00701 5.07488 5.18092 5.21283 5.38392 5.42399 5.47190 5.51767 5.54592 5.56749 5.59641 5.71557 5.76976 5.79753 6.01116 6.03956 6.09054 6.09944 6.27988 6.33574 6.44018 6.46679 6.52835 6.55973 6.56197 6.67440 6.73741 6.75741 6.95508 7.04966 7.08675 7.21671 7.67411 7.68473 8.41488 8.46114 9.52464 10.10842 10.45568 11.45644 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013241 B = 0.002909 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.161816 B = 9623.352463 C =10309.887616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.724 5.724 10 C 0.180 3.820 11 C -0.138 4.138 12 C 0.118 3.882 13 N -0.602 5.602 14 C 0.588 3.412 15 O -0.542 6.542 16 C -0.197 4.197 17 C 0.035 3.965 18 N -0.548 5.548 19 H 0.419 0.581 20 C 0.000 4.000 21 C -0.088 4.088 22 C -0.003 4.003 23 C -0.094 4.094 24 C -0.116 4.116 25 C -0.125 4.125 26 C -0.123 4.123 27 C -0.112 4.112 28 C 0.101 3.899 29 C -0.149 4.149 30 H 0.256 0.744 31 H 0.384 0.616 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.175 0.825 38 H 0.172 0.828 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.084 0.916 45 H 0.063 0.937 46 H 0.072 0.928 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.529 -20.444 11.054 23.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.364 5.364 10 C 0.069 3.931 11 C -0.177 4.177 12 C -0.005 4.005 13 N -0.335 5.335 14 C 0.376 3.624 15 O -0.419 6.419 16 C -0.207 4.207 17 C -0.099 4.099 18 N -0.142 5.142 19 H 0.255 0.745 20 C -0.130 4.130 21 C -0.094 4.094 22 C -0.004 4.004 23 C -0.112 4.112 24 C -0.134 4.134 25 C -0.143 4.143 26 C -0.141 4.141 27 C -0.130 4.130 28 C -0.022 4.022 29 C -0.191 4.191 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.192 0.808 38 H 0.189 0.811 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.102 0.898 45 H 0.081 0.919 46 H 0.091 0.909 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.435 -20.725 10.779 23.984 hybrid contribution 0.560 1.204 0.327 1.367 sum 5.996 -19.521 11.106 23.246 Atomic orbital electron populations 1.69649 1.05108 1.25755 1.57544 1.24741 0.95485 0.97652 1.03043 0.86294 0.78535 0.83706 0.77792 1.21289 1.21725 1.21336 1.19181 0.90898 0.84138 1.42835 0.91278 1.42431 1.05803 0.99706 1.88507 1.20162 0.94384 0.86041 0.92476 1.22199 0.99214 0.94188 1.02135 1.21584 0.98655 0.97933 0.82292 1.48044 1.54336 1.14560 1.16589 1.17414 0.78443 0.81586 0.84945 1.90769 1.42626 1.44179 1.64367 1.20340 0.94641 1.11559 0.94126 1.21829 0.99263 1.04269 0.84567 1.41377 1.11703 1.51088 1.10026 0.74456 1.21753 0.84341 1.07234 0.99632 1.19014 0.92599 1.05858 0.91979 1.18036 0.90266 0.93830 0.98282 1.21195 0.92773 0.99332 0.97944 1.21099 0.95977 0.96711 0.99623 1.21140 0.99424 0.94460 0.99306 1.20996 0.93247 0.99475 1.00398 1.21108 0.95856 0.95477 1.00533 1.21938 0.94362 0.88772 0.97149 1.22566 1.00126 0.94775 1.01603 0.93459 0.78275 0.93517 0.90628 0.91894 0.91727 0.89421 0.80812 0.81100 0.86342 0.86005 0.86362 0.86293 0.86324 0.89820 0.91852 0.90892 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.99 13.06 55.49 0.72 -27.27 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.72 -17.81 5.12 -53.38 -0.27 -18.08 16 10 C 0.18 3.44 2.73 -67.89 -0.19 3.26 16 11 C -0.14 -2.34 5.55 -26.61 -0.15 -2.49 16 12 C 0.12 1.77 6.42 -3.71 -0.02 1.75 16 13 N -0.60 -8.89 2.98 -174.41 -0.52 -9.41 16 14 C 0.59 9.40 7.31 -12.65 -0.09 9.30 16 15 O -0.54 -10.49 16.54 5.24 0.09 -10.40 16 16 C -0.20 -2.62 5.33 -103.15 -0.55 -3.17 16 17 C 0.03 0.33 9.52 -16.87 -0.16 0.17 16 18 N -0.55 -3.91 5.88 -12.63 -0.07 -3.99 16 19 H 0.42 1.41 8.96 -40.82 -0.37 1.04 16 20 C 0.00 0.00 11.80 -16.50 -0.19 -0.20 16 21 C -0.09 -1.11 5.79 -102.94 -0.60 -1.71 16 22 C 0.00 -0.05 5.73 -104.91 -0.60 -0.65 16 23 C -0.09 -1.36 9.55 -39.24 -0.37 -1.74 16 24 C -0.12 -1.49 10.03 -39.63 -0.40 -1.89 16 25 C -0.13 -1.41 10.04 -39.52 -0.40 -1.81 16 26 C -0.12 -1.32 10.03 -39.63 -0.40 -1.72 16 27 C -0.11 -1.30 9.72 -39.24 -0.38 -1.68 16 28 C 0.10 1.34 5.85 -3.93 -0.02 1.32 16 29 C -0.15 -2.53 5.64 -26.83 -0.15 -2.68 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.38 10.18 7.80 -40.82 -0.32 9.86 16 32 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 1.38 7.03 -51.93 -0.36 1.01 16 37 H 0.17 1.22 7.55 -52.49 -0.40 0.82 16 38 H 0.17 1.04 8.06 -52.49 -0.42 0.61 16 39 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 40 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 41 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 44 H 0.08 0.97 4.57 -51.93 -0.24 0.74 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 47 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 388.25 15.07 5.85 5.85 Total: -1.00 -34.89 388.25 -10.87 -45.76 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -6.72 Total: 11.51 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -4.92 Total: -11.04 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: -0.14 Total: -58.75 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.89 -10.87 -45.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997300812.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.407 kcal (2) G-P(sol) polarization free energy of solvation -34.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds