Wall clock time and date at job start Tue Mar 31 2020 22:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00185 * 2 1 4 4 H 1.48502 * 109.47039 * 240.00585 * 3 2 1 5 5 H 1.48504 * 109.46992 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47099 * 120.00426 * 3 2 1 7 7 C 1.38816 * 120.00287 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00511 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99268 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99374 * 180.02562 * 9 7 2 11 11 C 1.53038 * 109.46110 * 204.99869 * 10 9 7 12 12 C 1.53189 * 109.31647 * 178.61741 * 11 10 9 13 13 N 1.46925 * 108.77658 * 54.63682 * 12 11 10 14 14 C 1.34771 * 120.63614 * 126.37207 * 13 12 11 15 15 O 1.21646 * 119.99419 * 4.28729 * 14 13 12 16 16 C 1.47129 * 120.00675 * 184.29099 * 14 13 12 17 17 C 1.36630 * 126.97014 * 310.41795 * 16 14 13 18 18 N 1.34709 * 108.67846 * 180.22536 * 17 16 14 19 19 H 0.96998 * 124.72157 * 179.73649 * 18 17 16 20 20 C 1.36220 * 110.54658 * 359.55674 * 18 17 16 21 21 C 1.35745 * 108.68354 * 0.44207 * 20 18 17 22 22 C 1.48272 * 126.98546 * 179.71732 * 21 20 18 23 23 C 1.39388 * 120.12788 * 129.74413 * 22 21 20 24 24 C 1.38008 * 119.87132 * 179.77308 * 23 22 21 25 25 C 1.38327 * 120.12491 * 0.51034 * 24 23 22 26 26 C 1.38326 * 120.25880 * 359.74856 * 25 24 23 27 27 C 1.38010 * 120.12308 * 359.97438 * 26 25 24 28 28 C 1.46927 * 118.73566 * 306.64404 * 13 12 11 29 29 C 1.52758 * 109.00849 * 53.31038 * 28 13 12 30 30 H 0.96999 * 119.99849 * 359.97438 * 1 2 3 31 31 H 0.96991 * 120.00667 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.45368 * 324.96628 * 10 9 7 33 33 H 1.08998 * 109.49701 * 58.66193 * 11 10 9 34 34 H 1.09003 * 109.52536 * 298.58360 * 11 10 9 35 35 H 1.09000 * 109.58403 * 294.84436 * 12 11 10 36 36 H 1.08996 * 109.70629 * 174.49336 * 12 11 10 37 37 H 1.07998 * 125.65475 * 359.95734 * 17 16 14 38 38 H 1.08002 * 125.65714 * 180.20522 * 20 18 17 39 39 H 1.08001 * 120.06319 * 0.02562 * 23 22 21 40 40 H 1.08003 * 119.93412 * 180.26216 * 24 23 22 41 41 H 1.08002 * 119.86995 * 179.72371 * 25 24 23 42 42 H 1.08002 * 119.93955 * 180.02562 * 26 25 24 43 43 H 1.07998 * 120.06058 * 180.02562 * 27 26 25 44 44 H 1.09002 * 109.58845 * 173.14619 * 28 13 12 45 45 H 1.09004 * 109.58635 * 293.56873 * 28 13 12 46 46 H 1.08998 * 109.56442 * 185.55303 * 29 28 13 47 47 H 1.08996 * 109.36329 * 65.49884 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6567 -0.0005 11 6 1.1804 -4.7522 -0.6103 12 6 1.9619 -6.0694 -0.6404 13 7 2.4413 -6.3659 0.7164 14 6 2.1727 -7.5528 1.2957 15 8 1.5955 -8.4196 0.6670 16 6 2.5774 -7.8001 2.6885 17 6 3.8094 -7.5818 3.2373 18 7 3.7729 -7.9396 4.5355 19 1 4.5252 -7.8837 5.1453 20 6 2.5315 -8.3871 4.8734 21 6 1.7358 -8.3328 3.7749 22 6 0.3099 -8.7293 3.6859 23 6 -0.6242 -7.8603 3.1245 24 6 -1.9493 -8.2366 3.0400 25 6 -2.3529 -9.4692 3.5208 26 6 -1.4314 -10.3336 4.0839 27 6 -0.1026 -9.9702 4.1685 28 6 3.2141 -5.3416 1.4321 29 6 2.4233 -4.0346 1.4368 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 0.0002 32 1 2.9683 -3.5503 -0.5905 33 1 0.9013 -4.4715 -1.6259 34 1 0.2811 -4.8765 -0.0071 35 1 2.8121 -5.9745 -1.3158 36 1 1.3118 -6.8748 -0.9823 37 1 4.6708 -7.1916 2.7156 38 1 2.2313 -8.7318 5.8519 39 1 -0.3109 -6.8959 2.7526 40 1 -2.6732 -7.5658 2.6013 41 1 -3.3917 -9.7577 3.4566 42 1 -1.7521 -11.2949 4.4573 43 1 0.6161 -10.6460 4.6079 44 1 3.3880 -5.6655 2.4583 45 1 4.1686 -5.1861 0.9292 46 1 3.0289 -3.2431 1.8783 47 1 1.5126 -4.1654 2.0213 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997300812.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:59 Heat of formation + Delta-G solvation = 30.164083 kcal Electronic energy + Delta-G solvation = -29195.595176 eV Core-core repulsion = 25343.135418 eV Total energy + Delta-G solvation = -3852.459759 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.25246 -40.63259 -39.65762 -38.55748 -36.09340 -33.87371 -33.45084 -32.46640 -31.77559 -31.19407 -30.46897 -29.24537 -26.71229 -24.87182 -24.25513 -23.82269 -23.42946 -22.81024 -21.31793 -20.79258 -19.92688 -19.18073 -18.80093 -17.70169 -17.41329 -16.67914 -16.55872 -16.27082 -15.95535 -15.67343 -15.48323 -15.39380 -14.95987 -14.90490 -14.78653 -14.51189 -14.26007 -14.16740 -14.01155 -13.85119 -13.59438 -13.31458 -13.06495 -12.96486 -12.79062 -12.59858 -12.22045 -12.17261 -12.03367 -11.98164 -11.93704 -11.68111 -11.31680 -11.00691 -10.83188 -10.20928 -9.80982 -9.64924 -9.36842 -8.99790 -8.91719 -7.91734 -5.20818 0.32016 0.54021 0.99405 1.48257 1.51308 1.51760 1.57260 1.91747 2.27860 2.49737 2.58215 2.97215 3.41284 3.70141 3.83338 3.91895 3.98322 4.04413 4.13197 4.14028 4.19031 4.21263 4.30752 4.36497 4.41062 4.45733 4.61695 4.65977 4.70505 4.74936 4.80999 4.83960 4.88972 4.96949 5.04770 5.09402 5.16610 5.19978 5.31574 5.47705 5.51282 5.55643 5.64155 5.64306 5.67804 5.79360 5.95646 6.15804 6.29299 6.50694 6.70198 7.27457 7.35076 8.10877 8.34433 9.31967 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013241 B = 0.002909 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.161816 B = 9623.352463 C =10309.887616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.080 4.080 3 Si 0.972 3.028 4 H -0.277 1.277 5 H -0.300 1.300 6 H -0.276 1.276 7 C -0.235 4.235 8 H 0.081 0.919 9 N -0.739 5.739 10 C 0.175 3.825 11 C -0.127 4.127 12 C 0.124 3.876 13 N -0.603 5.603 14 C 0.587 3.413 15 O -0.587 6.587 16 C -0.243 4.243 17 C 0.056 3.944 18 N -0.527 5.527 19 H 0.441 0.559 20 C 0.022 3.978 21 C -0.129 4.129 22 C -0.016 4.016 23 C -0.125 4.125 24 C -0.134 4.134 25 C -0.132 4.132 26 C -0.120 4.120 27 C -0.118 4.118 28 C 0.111 3.889 29 C -0.138 4.138 30 H 0.249 0.751 31 H 0.369 0.631 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.042 0.958 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.205 0.795 38 H 0.204 0.796 39 H 0.089 0.911 40 H 0.123 0.877 41 H 0.143 0.857 42 H 0.152 0.848 43 H 0.143 0.857 44 H 0.106 0.894 45 H 0.092 0.908 46 H 0.067 0.933 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.543 -21.996 13.005 26.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.271 4.271 3 Si 0.801 3.199 4 H -0.203 1.203 5 H -0.227 1.227 6 H -0.202 1.202 7 C -0.367 4.367 8 H 0.099 0.901 9 N -0.378 5.378 10 C 0.067 3.933 11 C -0.166 4.166 12 C 0.001 3.999 13 N -0.335 5.335 14 C 0.377 3.623 15 O -0.468 6.468 16 C -0.253 4.253 17 C -0.080 4.080 18 N -0.122 5.122 19 H 0.283 0.717 20 C -0.108 4.108 21 C -0.135 4.135 22 C -0.017 4.017 23 C -0.144 4.144 24 C -0.152 4.152 25 C -0.149 4.149 26 C -0.138 4.138 27 C -0.135 4.135 28 C -0.012 4.012 29 C -0.179 4.179 30 H 0.058 0.942 31 H 0.200 0.800 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.061 0.939 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.221 0.779 38 H 0.221 0.779 39 H 0.107 0.893 40 H 0.141 0.859 41 H 0.161 0.839 42 H 0.169 0.831 43 H 0.161 0.839 44 H 0.124 0.876 45 H 0.110 0.890 46 H 0.086 0.914 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 8.531 -22.300 12.765 27.075 hybrid contribution -0.369 1.597 -0.252 1.659 sum 8.162 -20.703 12.513 25.531 Atomic orbital electron populations 1.69829 1.06786 1.25966 1.59870 1.25578 0.96294 1.01173 1.04094 0.85225 0.77137 0.79212 0.78278 1.20321 1.22687 1.20171 1.19616 0.91537 0.84991 1.40530 0.90112 1.42677 1.05336 1.01119 1.88659 1.20401 0.94275 0.84483 0.94124 1.22049 0.98436 0.94780 1.01322 1.21479 0.99039 0.96027 0.83323 1.48106 1.54278 1.14714 1.16383 1.17884 0.77374 0.81101 0.85898 1.90725 1.44751 1.45678 1.65682 1.20295 0.96881 1.15067 0.93085 1.22140 0.98471 1.02220 0.85147 1.41402 1.11942 1.49202 1.09622 0.71736 1.22142 0.84059 1.04954 0.99687 1.19232 0.92744 1.08176 0.93347 1.18303 0.90913 0.94345 0.98090 1.21140 0.94070 0.98986 1.00174 1.21273 0.95608 0.97956 1.00372 1.21450 1.00968 0.93697 0.98826 1.21428 0.92827 1.00421 0.99102 1.21439 0.96854 0.94987 1.00269 1.21984 0.94216 0.86097 0.98860 1.22346 0.99601 0.96838 0.99121 0.94220 0.80027 0.92846 0.90921 0.93871 0.89447 0.90474 0.77881 0.77925 0.89256 0.85945 0.83937 0.83059 0.83932 0.87591 0.88980 0.91416 0.94649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.23 13.06 21.65 0.28 -59.94 16 2 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 3 Si 0.97 45.70 29.55 68.60 2.03 47.73 16 4 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 5 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.24 -12.79 9.93 84.03 0.83 -11.96 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 9 N -0.74 -37.24 5.12 -322.81 -1.65 -38.89 16 10 C 0.18 6.77 2.73 45.02 0.12 6.89 16 11 C -0.13 -4.45 5.55 30.67 0.17 -4.28 16 12 C 0.12 3.76 6.42 86.36 0.55 4.32 16 13 N -0.60 -17.60 2.98 -823.95 -2.45 -20.05 16 14 C 0.59 18.99 7.31 86.58 0.63 19.63 16 15 O -0.59 -23.71 16.54 -4.18 -0.07 -23.78 16 16 C -0.24 -6.25 5.33 -18.91 -0.10 -6.36 16 17 C 0.06 0.88 9.52 83.88 0.80 1.68 16 18 N -0.53 -5.36 5.88 -193.88 -1.14 -6.49 16 19 H 0.44 0.74 8.96 -92.71 -0.83 -0.09 16 20 C 0.02 0.33 11.80 83.43 0.98 1.31 16 21 C -0.13 -3.15 5.79 -18.77 -0.11 -3.25 16 22 C -0.02 -0.44 5.73 -20.05 -0.11 -0.55 16 23 C -0.13 -3.93 9.55 22.49 0.21 -3.71 16 24 C -0.13 -3.70 10.03 22.24 0.22 -3.48 16 25 C -0.13 -2.92 10.04 22.31 0.22 -2.70 16 26 C -0.12 -2.39 10.03 22.24 0.22 -2.17 16 27 C -0.12 -2.59 9.72 22.49 0.22 -2.37 16 28 C 0.11 2.73 5.85 86.22 0.50 3.23 16 29 C -0.14 -4.65 5.64 30.53 0.17 -4.47 16 30 H 0.25 15.04 8.31 -92.71 -0.77 14.26 16 31 H 0.37 20.50 7.80 -92.71 -0.72 19.78 16 32 H 0.05 2.01 8.08 -2.39 -0.02 1.99 16 33 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.08 2.53 7.03 -2.39 -0.02 2.51 16 37 H 0.20 1.87 7.55 -2.91 -0.02 1.85 16 38 H 0.20 1.60 8.06 -2.91 -0.02 1.57 16 39 H 0.09 3.17 8.06 -2.91 -0.02 3.15 16 40 H 0.12 3.13 8.06 -2.91 -0.02 3.11 16 41 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 42 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 43 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 44 H 0.11 2.18 4.57 -2.39 -0.01 2.17 16 45 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 46 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 47 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -80.47 388.25 2.46 -78.01 By element: Atomic # 1 Polarization: 36.32 SS G_CDS: -0.55 Total: 35.77 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: 6.02 Total: -12.33 kcal Atomic # 7 Polarization: -120.42 SS G_CDS: -4.96 Total: -125.39 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.07 Total: -23.78 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -80.47 2.46 -78.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997300812.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.170 kcal (2) G-P(sol) polarization free energy of solvation -80.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds