Wall clock time and date at job start Tue Mar 31 2020 22:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00417 * 2 1 4 4 H 1.48500 * 109.46771 * 239.99681 * 3 2 1 5 5 H 1.48497 * 109.47136 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47079 * 119.99423 * 3 2 1 7 7 C 1.38820 * 119.99493 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99897 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00094 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00010 * 179.97438 * 9 7 2 11 11 C 1.53037 * 109.46246 * 154.99947 * 10 9 7 12 12 C 1.53189 * 109.31553 * 181.38429 * 11 10 9 13 13 N 1.46920 * 108.77570 * 305.36813 * 12 11 10 14 14 C 1.34785 * 120.62861 * 233.33085 * 13 12 11 15 15 O 1.21717 * 119.99922 * 173.21262 * 14 13 12 16 16 C 1.46577 * 119.99877 * 353.21078 * 14 13 12 17 17 C 1.38049 * 126.00478 * 155.93915 * 16 14 13 18 18 C 1.39366 * 107.44532 * 179.84239 * 17 16 14 19 19 C 1.37821 * 107.65008 * 0.41987 * 18 17 16 20 20 C 1.47809 * 125.82679 * 179.73713 * 19 18 17 21 21 C 1.39596 * 120.14815 * 179.72107 * 20 19 18 22 22 C 1.37955 * 119.85074 * 179.74625 * 21 20 19 23 23 C 1.38369 * 120.14679 * 0.53762 * 22 21 20 24 24 C 1.38358 * 120.29180 * 359.74042 * 23 22 21 25 25 C 1.37954 * 120.15182 * 359.97438 * 24 23 22 26 26 N 1.36414 * 108.35231 * 359.73956 * 19 18 17 27 27 H 0.97000 * 125.72047 * 180.02562 * 26 19 18 28 28 C 1.46922 * 118.74081 * 53.60619 * 13 12 11 29 29 C 1.53042 * 109.45946 * 275.07113 * 10 9 7 30 30 H 0.97006 * 120.00006 * 0.02562 * 1 2 3 31 31 H 0.96995 * 119.99866 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.44941 * 35.03262 * 10 9 7 33 33 H 1.09004 * 109.49663 * 61.43554 * 11 10 9 34 34 H 1.09002 * 109.49865 * 301.34158 * 11 10 9 35 35 H 1.08997 * 109.58958 * 185.57572 * 12 11 10 36 36 H 1.09005 * 109.70131 * 65.22092 * 12 11 10 37 37 H 1.08004 * 126.28181 * 359.96672 * 17 16 14 38 38 H 1.07997 * 126.17879 * 180.15908 * 18 17 16 39 39 H 1.08000 * 120.07276 * 0.02747 * 21 20 19 40 40 H 1.08001 * 119.92887 * 180.25521 * 22 21 20 41 41 H 1.07995 * 119.85424 * 179.76393 * 23 22 21 42 42 H 1.07999 * 119.92424 * 180.02562 * 24 23 22 43 43 H 1.08000 * 120.07670 * 180.02562 * 25 24 23 44 44 H 1.09003 * 109.58551 * 66.18197 * 28 13 12 45 45 H 1.09000 * 109.58937 * 186.60180 * 28 13 12 46 46 H 1.09003 * 109.49863 * 298.56315 * 29 10 9 47 47 H 1.08995 * 109.49939 * 58.66195 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6961 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2024 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 6 1.1801 -4.7523 0.6104 12 6 1.9615 -6.0695 0.6404 13 7 2.4410 -6.3660 -0.7163 14 6 2.1773 -7.5552 -1.2933 15 8 2.4710 -7.7444 -2.4592 16 6 1.5369 -8.6206 -0.5166 17 6 0.7998 -9.6687 -1.0305 18 6 0.3775 -10.4490 0.0443 19 6 0.8529 -9.8637 1.1979 20 6 0.6341 -10.3593 2.5731 21 6 1.1777 -9.6731 3.6605 22 6 0.9653 -10.1382 4.9417 23 6 0.2247 -11.2884 5.1496 24 6 -0.3120 -11.9765 4.0760 25 6 -0.1121 -11.5190 2.7899 26 7 1.5597 -8.7487 0.8541 27 1 2.0042 -8.1472 1.4717 28 6 3.2186 -5.3439 -1.4299 29 6 2.4231 -4.0347 -1.4368 30 1 -0.4850 0.8401 -0.0004 31 1 0.3554 -2.3881 -0.0002 32 1 2.9681 -3.5505 0.5905 33 1 0.2811 -4.8763 0.0066 34 1 0.9010 -4.4715 1.6259 35 1 1.3094 -6.8736 0.9814 36 1 2.8117 -5.9771 1.3163 37 1 0.5905 -9.8516 -2.0741 38 1 -0.2185 -11.3476 -0.0157 39 1 1.7594 -8.7776 3.4993 40 1 1.3818 -9.6060 5.7842 41 1 0.0645 -11.6504 6.1544 42 1 -0.8895 -12.8733 4.2451 43 1 -0.5320 -12.0568 1.9527 44 1 4.1714 -5.1899 -0.9233 45 1 3.3959 -5.6691 -2.4550 46 1 1.5124 -4.1655 -2.0213 47 1 3.0288 -3.2433 -1.8783 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997410476.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:18 Heat of formation + Delta-G solvation = 58.112740 kcal Electronic energy + Delta-G solvation = -28493.842330 eV Core-core repulsion = 24642.594517 eV Total energy + Delta-G solvation = -3851.247814 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.75366 -39.74086 -38.92089 -37.39468 -34.63011 -32.55674 -32.13487 -31.82977 -31.18198 -30.60585 -29.48402 -28.16282 -25.24245 -23.85920 -23.21589 -22.96271 -22.61983 -21.24371 -20.87383 -19.98116 -19.58433 -18.06237 -17.21733 -16.96004 -16.32298 -15.78442 -15.54937 -15.19253 -14.94245 -14.68090 -14.33084 -14.20032 -13.92258 -13.77633 -13.70703 -13.61958 -13.35893 -13.16717 -12.94265 -12.81643 -12.64894 -12.48680 -12.04027 -11.67714 -11.55831 -11.38491 -11.01737 -10.94010 -10.85844 -10.49857 -10.33420 -10.12458 -9.89737 -9.77689 -9.71679 -9.35527 -9.21476 -8.95178 -8.65010 -7.88105 -7.03262 -5.81959 -3.11635 0.47610 1.01164 1.59428 2.53383 2.69766 2.92135 3.32592 3.40125 3.44897 3.45817 3.54693 4.26461 4.40354 4.46336 4.53221 4.56095 4.73610 4.74488 4.98778 5.05194 5.07743 5.09673 5.17868 5.24225 5.32931 5.47576 5.48199 5.53114 5.61282 5.68825 5.78343 5.78618 5.85220 5.88427 6.05619 6.07382 6.12064 6.12630 6.18727 6.37441 6.46863 6.47750 6.54769 6.57984 6.69149 6.83828 6.98499 7.05816 7.37238 7.63565 8.10269 8.36041 9.47297 10.03720 10.38412 11.40446 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013772 B = 0.002469 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.678249 B =11337.034621 C =12811.067443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.180 3.820 11 C -0.137 4.137 12 C 0.092 3.908 13 N -0.605 5.605 14 C 0.586 3.414 15 O -0.532 6.532 16 C -0.031 4.031 17 C -0.111 4.111 18 C -0.181 4.181 19 C 0.072 3.928 20 C -0.017 4.017 21 C -0.121 4.121 22 C -0.111 4.111 23 C -0.122 4.122 24 C -0.113 4.113 25 C -0.100 4.100 26 N -0.532 5.532 27 H 0.420 0.580 28 C 0.114 3.886 29 C -0.151 4.151 30 H 0.256 0.744 31 H 0.384 0.616 32 H 0.048 0.952 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.150 0.850 38 H 0.146 0.854 39 H 0.116 0.884 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.126 0.874 43 H 0.130 0.870 44 H 0.066 0.934 45 H 0.088 0.912 46 H 0.060 0.940 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.351 -25.458 8.577 26.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.070 3.930 11 C -0.176 4.176 12 C -0.032 4.032 13 N -0.338 5.338 14 C 0.375 3.625 15 O -0.408 6.408 16 C -0.145 4.145 17 C -0.137 4.137 18 C -0.205 4.205 19 C -0.043 4.043 20 C -0.018 4.018 21 C -0.140 4.140 22 C -0.129 4.129 23 C -0.140 4.140 24 C -0.131 4.131 25 C -0.119 4.119 26 N -0.133 5.133 27 H 0.263 0.737 28 C -0.008 4.008 29 C -0.192 4.192 30 H 0.066 0.934 31 H 0.217 0.783 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.168 0.832 38 H 0.164 0.836 39 H 0.134 0.866 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.144 0.856 43 H 0.148 0.852 44 H 0.084 0.916 45 H 0.107 0.893 46 H 0.079 0.921 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.736 -25.210 8.029 26.515 hybrid contribution 0.294 1.388 0.365 1.465 sum 2.029 -23.823 8.394 25.339 Atomic orbital electron populations 1.69652 1.05140 1.25871 1.57349 1.24757 0.95511 0.97744 1.02826 0.86271 0.78540 0.83530 0.77858 1.21218 1.21675 1.21259 1.19176 0.90932 0.84051 1.43151 0.91210 1.42405 1.05783 0.99636 1.88558 1.20148 0.94244 0.85988 0.92648 1.22179 0.99313 0.93658 1.02483 1.22178 0.98586 0.99109 0.83296 1.48090 1.54132 1.14732 1.16846 1.17114 0.78224 0.81047 0.86147 1.90830 1.53094 1.81269 1.15626 1.20471 1.10515 1.01709 0.81761 1.21197 0.99274 0.93560 0.99641 1.21074 1.06689 1.02440 0.90302 1.19160 1.01185 0.90684 0.93315 1.18093 0.98758 0.95708 0.89224 1.21126 1.00478 0.99842 0.92552 1.21066 0.98605 0.96559 0.96649 1.21260 0.97948 0.95588 0.99188 1.21106 0.99702 1.00003 0.92322 1.21123 0.98066 0.95171 0.97518 1.42787 1.41675 1.21962 1.06894 0.73693 1.21761 0.93565 0.87706 0.97814 1.22680 1.00308 0.94793 1.01393 0.93393 0.78250 0.93416 0.91449 0.90351 0.90082 0.91098 0.83210 0.83621 0.86575 0.85639 0.85863 0.85559 0.85222 0.91617 0.89327 0.92076 0.90506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.81 13.06 55.49 0.72 -27.09 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 7 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.72 -17.52 5.12 -53.39 -0.27 -17.79 16 10 C 0.18 3.35 2.73 -67.89 -0.19 3.17 16 11 C -0.14 -2.09 5.55 -26.61 -0.15 -2.24 16 12 C 0.09 1.10 5.29 -3.72 -0.02 1.08 16 13 N -0.60 -8.50 2.97 -174.35 -0.52 -9.02 16 14 C 0.59 8.92 7.62 -12.89 -0.10 8.83 16 15 O -0.53 -9.71 16.39 5.17 0.08 -9.63 16 16 C -0.03 -0.40 6.37 -81.94 -0.52 -0.92 16 17 C -0.11 -1.33 10.68 -39.23 -0.42 -1.75 16 18 C -0.18 -1.83 10.22 -39.31 -0.40 -2.24 16 19 C 0.07 0.73 6.93 -82.07 -0.57 0.16 16 20 C -0.02 -0.15 5.87 -104.97 -0.62 -0.77 16 21 C -0.12 -0.98 9.70 -39.18 -0.38 -1.36 16 22 C -0.11 -0.79 10.03 -39.64 -0.40 -1.19 16 23 C -0.12 -0.80 10.04 -39.49 -0.40 -1.19 16 24 C -0.11 -0.74 10.03 -39.64 -0.40 -1.14 16 25 C -0.10 -0.76 9.57 -39.18 -0.37 -1.13 16 26 N -0.53 -5.52 4.65 -5.81 -0.03 -5.55 16 27 H 0.42 3.58 5.45 -40.82 -0.22 3.36 16 28 C 0.11 1.68 6.44 -3.71 -0.02 1.66 16 29 C -0.15 -2.65 5.66 -26.61 -0.15 -2.80 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.38 10.00 7.80 -40.82 -0.32 9.69 16 32 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.08 0.85 4.23 -51.93 -0.22 0.63 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.15 1.70 8.06 -52.48 -0.42 1.28 16 38 H 0.15 1.11 7.26 -52.49 -0.38 0.73 16 39 H 0.12 0.78 7.14 -52.49 -0.37 0.40 16 40 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 41 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 42 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 43 H 0.13 0.77 6.98 -52.49 -0.37 0.41 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.09 1.37 7.00 -51.93 -0.36 1.01 16 46 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 47 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 LS Contribution 382.37 15.07 5.76 5.76 Total: -1.00 -32.87 382.37 -11.06 -43.92 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -6.44 Total: 11.28 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -5.35 Total: -8.93 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: -0.09 Total: -59.44 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.08 Total: -9.63 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.87 -11.06 -43.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997410476.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.036 kcal (2) G-P(sol) polarization free energy of solvation -32.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds