Wall clock time and date at job start Tue Mar 31 2020 22:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00417 * 2 1 4 4 H 1.48500 * 109.46771 * 239.99681 * 3 2 1 5 5 H 1.48497 * 109.47136 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47079 * 119.99423 * 3 2 1 7 7 C 1.38820 * 119.99493 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99897 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00094 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00010 * 179.97438 * 9 7 2 11 11 C 1.53037 * 109.46246 * 154.99947 * 10 9 7 12 12 C 1.53189 * 109.31553 * 181.38429 * 11 10 9 13 13 N 1.46920 * 108.77570 * 305.36813 * 12 11 10 14 14 C 1.34785 * 120.62861 * 233.33085 * 13 12 11 15 15 O 1.21717 * 119.99922 * 173.21262 * 14 13 12 16 16 C 1.46577 * 119.99877 * 353.21078 * 14 13 12 17 17 C 1.38049 * 126.00478 * 155.93915 * 16 14 13 18 18 C 1.39366 * 107.44532 * 179.84239 * 17 16 14 19 19 C 1.37821 * 107.65008 * 0.41987 * 18 17 16 20 20 C 1.47809 * 125.82679 * 179.73713 * 19 18 17 21 21 C 1.39596 * 120.14815 * 179.72107 * 20 19 18 22 22 C 1.37955 * 119.85074 * 179.74625 * 21 20 19 23 23 C 1.38369 * 120.14679 * 0.53762 * 22 21 20 24 24 C 1.38358 * 120.29180 * 359.74042 * 23 22 21 25 25 C 1.37954 * 120.15182 * 359.97438 * 24 23 22 26 26 N 1.36414 * 108.35231 * 359.73956 * 19 18 17 27 27 H 0.97000 * 125.72047 * 180.02562 * 26 19 18 28 28 C 1.46922 * 118.74081 * 53.60619 * 13 12 11 29 29 C 1.53042 * 109.45946 * 275.07113 * 10 9 7 30 30 H 0.97006 * 120.00006 * 0.02562 * 1 2 3 31 31 H 0.96995 * 119.99866 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.44941 * 35.03262 * 10 9 7 33 33 H 1.09004 * 109.49663 * 61.43554 * 11 10 9 34 34 H 1.09002 * 109.49865 * 301.34158 * 11 10 9 35 35 H 1.08997 * 109.58958 * 185.57572 * 12 11 10 36 36 H 1.09005 * 109.70131 * 65.22092 * 12 11 10 37 37 H 1.08004 * 126.28181 * 359.96672 * 17 16 14 38 38 H 1.07997 * 126.17879 * 180.15908 * 18 17 16 39 39 H 1.08000 * 120.07276 * 0.02747 * 21 20 19 40 40 H 1.08001 * 119.92887 * 180.25521 * 22 21 20 41 41 H 1.07995 * 119.85424 * 179.76393 * 23 22 21 42 42 H 1.07999 * 119.92424 * 180.02562 * 24 23 22 43 43 H 1.08000 * 120.07670 * 180.02562 * 25 24 23 44 44 H 1.09003 * 109.58551 * 66.18197 * 28 13 12 45 45 H 1.09000 * 109.58937 * 186.60180 * 28 13 12 46 46 H 1.09003 * 109.49863 * 298.56315 * 29 10 9 47 47 H 1.08995 * 109.49939 * 58.66195 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6961 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2024 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 6 1.1801 -4.7523 0.6104 12 6 1.9615 -6.0695 0.6404 13 7 2.4410 -6.3660 -0.7163 14 6 2.1773 -7.5552 -1.2933 15 8 2.4710 -7.7444 -2.4592 16 6 1.5369 -8.6206 -0.5166 17 6 0.7998 -9.6687 -1.0305 18 6 0.3775 -10.4490 0.0443 19 6 0.8529 -9.8637 1.1979 20 6 0.6341 -10.3593 2.5731 21 6 1.1777 -9.6731 3.6605 22 6 0.9653 -10.1382 4.9417 23 6 0.2247 -11.2884 5.1496 24 6 -0.3120 -11.9765 4.0760 25 6 -0.1121 -11.5190 2.7899 26 7 1.5597 -8.7487 0.8541 27 1 2.0042 -8.1472 1.4717 28 6 3.2186 -5.3439 -1.4299 29 6 2.4231 -4.0347 -1.4368 30 1 -0.4850 0.8401 -0.0004 31 1 0.3554 -2.3881 -0.0002 32 1 2.9681 -3.5505 0.5905 33 1 0.2811 -4.8763 0.0066 34 1 0.9010 -4.4715 1.6259 35 1 1.3094 -6.8736 0.9814 36 1 2.8117 -5.9771 1.3163 37 1 0.5905 -9.8516 -2.0741 38 1 -0.2185 -11.3476 -0.0157 39 1 1.7594 -8.7776 3.4993 40 1 1.3818 -9.6060 5.7842 41 1 0.0645 -11.6504 6.1544 42 1 -0.8895 -12.8733 4.2451 43 1 -0.5320 -12.0568 1.9527 44 1 4.1714 -5.1899 -0.9233 45 1 3.3959 -5.6691 -2.4550 46 1 1.5124 -4.1655 -2.0213 47 1 3.0288 -3.2433 -1.8783 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997410476.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:17 Heat of formation + Delta-G solvation = 39.489946 kcal Electronic energy + Delta-G solvation = -28494.649875 eV Core-core repulsion = 24642.594517 eV Total energy + Delta-G solvation = -3852.055359 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.63774 -40.78609 -39.56552 -38.74237 -36.26639 -33.99605 -33.08432 -32.76548 -32.04856 -31.46159 -31.13664 -29.09114 -26.74748 -25.12756 -24.39816 -23.81875 -23.57101 -22.32958 -21.71795 -21.09614 -20.58609 -19.38175 -18.72127 -17.98583 -17.21830 -16.77064 -16.61799 -16.57290 -15.80406 -15.61480 -15.48051 -15.44077 -15.22114 -15.07302 -14.81731 -14.58439 -14.35400 -14.25501 -13.95139 -13.72275 -13.57695 -13.45384 -13.30537 -13.12123 -12.82436 -12.66369 -12.29386 -12.24400 -12.19263 -12.01322 -11.88283 -11.71915 -11.53746 -11.17349 -10.91190 -10.43817 -10.06937 -9.86273 -9.83744 -9.03959 -8.65509 -7.95265 -5.24236 -0.20325 0.50447 0.71692 1.46747 1.49310 1.55192 1.72915 1.75018 1.95042 2.29317 2.55351 2.99254 3.37472 3.41332 3.60149 3.67855 3.74266 3.92715 4.02057 4.06137 4.07897 4.23723 4.26373 4.28490 4.31113 4.40090 4.49723 4.57103 4.57800 4.61983 4.74961 4.76603 4.87384 4.89637 5.03319 5.05583 5.11872 5.14442 5.21472 5.39990 5.45233 5.49958 5.51764 5.54134 5.63330 5.78289 5.83633 6.05702 6.21978 6.26373 6.32556 6.94964 7.32480 8.07637 8.30396 9.28069 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013772 B = 0.002469 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.678249 B =11337.034621 C =12811.067443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.971 3.029 4 H -0.280 1.280 5 H -0.299 1.299 6 H -0.275 1.275 7 C -0.237 4.237 8 H 0.078 0.922 9 N -0.737 5.737 10 C 0.175 3.825 11 C -0.128 4.128 12 C 0.099 3.901 13 N -0.605 5.605 14 C 0.585 3.415 15 O -0.572 6.572 16 C -0.059 4.059 17 C -0.118 4.118 18 C -0.188 4.188 19 C 0.087 3.913 20 C -0.041 4.041 21 C -0.131 4.131 22 C -0.122 4.122 23 C -0.122 4.122 24 C -0.119 4.119 25 C -0.105 4.105 26 N -0.525 5.525 27 H 0.428 0.572 28 C 0.122 3.878 29 C -0.139 4.139 30 H 0.250 0.750 31 H 0.371 0.629 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.148 0.852 38 H 0.170 0.830 39 H 0.126 0.874 40 H 0.142 0.858 41 H 0.145 0.855 42 H 0.149 0.851 43 H 0.143 0.857 44 H 0.090 0.910 45 H 0.080 0.920 46 H 0.037 0.963 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.196 -27.369 10.926 29.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.269 4.269 3 Si 0.800 3.200 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.201 1.201 7 C -0.369 4.369 8 H 0.096 0.904 9 N -0.376 5.376 10 C 0.067 3.933 11 C -0.167 4.167 12 C -0.024 4.024 13 N -0.337 5.337 14 C 0.375 3.625 15 O -0.452 6.452 16 C -0.172 4.172 17 C -0.144 4.144 18 C -0.212 4.212 19 C -0.030 4.030 20 C -0.042 4.042 21 C -0.149 4.149 22 C -0.140 4.140 23 C -0.140 4.140 24 C -0.137 4.137 25 C -0.123 4.123 26 N -0.126 5.126 27 H 0.272 0.728 28 C 0.000 4.000 29 C -0.180 4.180 30 H 0.059 0.941 31 H 0.202 0.798 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.166 0.834 38 H 0.188 0.812 39 H 0.144 0.856 40 H 0.160 0.840 41 H 0.162 0.838 42 H 0.167 0.833 43 H 0.161 0.839 44 H 0.109 0.891 45 H 0.098 0.902 46 H 0.056 0.944 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.627 -27.148 10.401 29.191 hybrid contribution -0.001 1.826 -0.261 1.845 sum 2.626 -25.322 10.140 27.403 Atomic orbital electron populations 1.69814 1.06666 1.26046 1.59669 1.25557 0.96317 1.01106 1.03955 0.85247 0.77188 0.79344 0.78213 1.20625 1.22500 1.20103 1.19587 0.91471 0.85087 1.40777 0.90362 1.42636 1.05385 1.00996 1.88579 1.20399 0.94654 0.84899 0.93370 1.22047 0.98404 0.94166 1.02105 1.22282 0.99726 0.97632 0.82749 1.48125 1.53823 1.14268 1.17466 1.17419 0.77616 0.81603 0.85816 1.90798 1.54893 1.82084 1.17420 1.20127 1.12387 1.01935 0.82773 1.21395 0.99109 0.93674 1.00238 1.21356 1.07099 1.03175 0.89568 1.19485 0.99554 0.89835 0.94086 1.18188 1.00523 0.96906 0.88607 1.21354 1.00507 1.00239 0.92850 1.21352 0.98786 0.97018 0.96825 1.21632 0.96884 0.95115 1.00359 1.21433 0.99640 1.00733 0.91886 1.21391 0.97561 0.94776 0.98613 1.42672 1.41686 1.22276 1.06007 0.72767 1.21613 0.94049 0.86213 0.98141 1.22471 0.99407 0.96078 1.00090 0.94126 0.79799 0.92580 0.93183 0.89616 0.88296 0.87872 0.83425 0.81247 0.85643 0.84037 0.83761 0.83318 0.83924 0.89149 0.90195 0.94439 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.26 13.06 21.65 0.28 -58.98 16 2 C -0.08 -4.38 5.50 84.86 0.47 -3.92 16 3 Si 0.97 45.64 29.55 68.60 2.03 47.66 16 4 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.24 -12.82 9.93 84.04 0.83 -11.98 16 8 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.74 -36.09 5.12 -322.81 -1.65 -37.75 16 10 C 0.18 6.45 2.73 45.02 0.12 6.57 16 11 C -0.13 -3.79 5.55 30.67 0.17 -3.62 16 12 C 0.10 2.17 5.29 86.36 0.46 2.62 16 13 N -0.60 -16.45 2.97 -823.72 -2.45 -18.90 16 14 C 0.58 17.76 7.62 86.42 0.66 18.42 16 15 O -0.57 -21.41 16.39 -4.40 -0.07 -21.48 16 16 C -0.06 -1.49 6.37 40.36 0.26 -1.23 16 17 C -0.12 -2.78 10.68 22.50 0.24 -2.54 16 18 C -0.19 -3.53 10.22 22.44 0.23 -3.30 16 19 C 0.09 1.60 6.93 40.87 0.28 1.89 16 20 C -0.04 -0.64 5.87 -20.09 -0.12 -0.76 16 21 C -0.13 -1.81 9.70 22.53 0.22 -1.59 16 22 C -0.12 -1.40 10.03 22.23 0.22 -1.18 16 23 C -0.12 -1.22 10.04 22.33 0.22 -1.00 16 24 C -0.12 -1.20 10.03 22.23 0.22 -0.98 16 25 C -0.10 -1.32 9.57 22.53 0.22 -1.10 16 26 N -0.52 -10.00 4.65 -172.31 -0.80 -10.80 16 27 H 0.43 6.29 5.45 -92.71 -0.51 5.79 16 28 C 0.12 3.55 6.44 86.36 0.56 4.11 16 29 C -0.14 -4.95 5.66 30.67 0.17 -4.78 16 30 H 0.25 14.89 8.31 -92.70 -0.77 14.12 16 31 H 0.37 19.86 7.80 -92.71 -0.72 19.14 16 32 H 0.06 2.00 8.08 -2.39 -0.02 1.98 16 33 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.10 1.87 4.23 -2.39 -0.01 1.86 16 36 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 38 H 0.17 2.20 7.26 -2.91 -0.02 2.18 16 39 H 0.13 1.37 7.14 -2.91 -0.02 1.35 16 40 H 0.14 1.09 8.06 -2.91 -0.02 1.06 16 41 H 0.14 0.78 8.06 -2.91 -0.02 0.76 16 42 H 0.15 0.77 8.06 -2.91 -0.02 0.74 16 43 H 0.14 1.31 6.98 -2.91 -0.02 1.29 16 44 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.08 2.50 7.00 -2.39 -0.02 2.49 16 46 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -72.55 382.37 2.55 -70.00 By element: Atomic # 1 Polarization: 34.83 SS G_CDS: -0.22 Total: 34.61 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: 5.43 Total: -4.37 kcal Atomic # 7 Polarization: -121.80 SS G_CDS: -4.62 Total: -126.42 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.07 Total: -21.48 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -72.55 2.55 -70.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997410476.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.485 kcal (2) G-P(sol) polarization free energy of solvation -72.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds