Wall clock time and date at job start Tue Mar 31 2020 22:53:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31613 * 1
3 3 Si 1.86807 * 119.99957 * 2 1
4 4 H 1.48500 * 109.46819 * 180.02562 * 3 2 1
5 5 H 1.48498 * 109.47157 * 299.99915 * 3 2 1
6 6 H 1.48496 * 109.46858 * 60.00414 * 3 2 1
7 7 C 1.38808 * 119.99929 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99924 * 180.02562 * 7 2 1
9 9 N 1.36934 * 120.00121 * 359.97438 * 7 2 1
10 10 C 1.46506 * 120.00197 * 180.02562 * 9 7 2
11 11 H 1.09008 * 109.49445 * 324.93262 * 10 9 7
12 12 C 1.53041 * 109.52531 * 204.85502 * 10 9 7
13 13 C 1.53037 * 109.53859 * 178.66305 * 12 10 9
14 14 C 1.52764 * 109.38168 * 61.24025 * 13 12 10
15 15 N 1.46934 * 109.00606 * 305.58651 * 14 13 12
16 16 C 1.34776 * 120.62732 * 233.58606 * 15 14 13
17 17 O 1.21553 * 119.99742 * 173.82049 * 16 15 14
18 18 C 1.47857 * 120.00028 * 354.09337 * 16 15 14
19 19 C 1.39613 * 120.11438 * 325.83245 * 18 16 15
20 20 C 1.37983 * 119.98775 * 179.74171 * 19 18 16
21 21 C 1.38267 * 120.20991 * 0.54025 * 20 19 18
22 22 C 1.38903 * 120.23485 * 359.71264 * 21 20 19
23 23 N 1.40219 * 119.99788 * 179.97438 * 22 21 20
24 24 C 1.36566 * 125.67091 * 179.71630 * 23 22 21
25 25 C 1.34851 * 108.20303 * 179.89791 * 24 23 22
26 26 C 1.40943 * 107.46719 * 0.36591 * 25 24 23
27 27 C 1.34858 * 107.46396 * 359.77399 * 26 25 24
28 28 C 1.38594 * 120.00724 * 0.03026 * 22 21 20
29 29 C 1.46920 * 118.73790 * 53.31206 * 15 14 13
30 30 H 0.97006 * 120.00453 * 359.97438 * 1 2 3
31 31 H 0.97004 * 120.00153 * 359.97438 * 9 7 2
32 32 H 1.09003 * 109.45313 * 298.68518 * 12 10 9
33 33 H 1.09000 * 109.45782 * 58.63995 * 12 10 9
34 34 H 1.09004 * 109.49494 * 181.31065 * 13 12 10
35 35 H 1.08994 * 109.50184 * 301.38153 * 13 12 10
36 36 H 1.08999 * 109.50840 * 185.70736 * 14 13 12
37 37 H 1.08997 * 109.43397 * 65.41812 * 14 13 12
38 38 H 1.08004 * 120.00572 * 359.97438 * 19 18 16
39 39 H 1.07994 * 119.89170 * 180.25538 * 20 19 18
40 40 H 1.08006 * 119.88310 * 179.70108 * 21 20 19
41 41 H 1.08000 * 125.89839 * 0.02562 * 24 23 22
42 42 H 1.08007 * 126.26663 * 180.14338 * 25 24 23
43 43 H 1.07994 * 126.26808 * 179.75075 * 26 25 24
44 44 H 1.07999 * 125.89497 * 179.97438 * 27 26 25
45 45 H 1.07999 * 120.10502 * 179.97438 * 28 22 21
46 46 H 1.09002 * 109.58556 * 66.43216 * 29 15 14
47 47 H 1.09000 * 109.58603 * 186.85526 * 29 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.7101 1.3464 -0.0006
5 1 1.8914 2.3965 -1.2125
6 1 1.8914 2.3964 1.2125
7 6 2.0102 -1.2021 -0.0005
8 1 3.0902 -1.2021 -0.0001
9 7 1.3255 -2.3880 -0.0005
10 6 2.0580 -3.6568 -0.0005
11 1 2.9683 -3.5513 -0.5909
12 6 1.1803 -4.7541 -0.6068
13 6 1.9571 -6.0723 -0.6375
14 6 2.3232 -6.4784 0.7889
15 7 3.0406 -5.3696 1.4329
16 6 4.2452 -5.5704 2.0032
17 8 4.8791 -4.6264 2.4328
18 6 4.7982 -6.9381 2.1007
19 6 3.9460 -8.0257 2.3007
20 6 4.4644 -9.3016 2.3860
21 6 5.8280 -9.5066 2.2852
22 6 6.6847 -8.4306 2.0915
23 7 8.0669 -8.6441 1.9906
24 6 9.0101 -7.6761 1.7952
25 6 10.2205 -8.2692 1.7552
26 6 10.0188 -9.6540 1.9235
27 6 8.6929 -9.8556 2.0651
28 6 6.1736 -7.1456 1.9991
29 6 2.4227 -4.0367 1.4380
30 1 -0.4851 0.8401 0.0004
31 1 0.3555 -2.3880 0.0002
32 1 0.2818 -4.8760 -0.0018
33 1 0.8990 -4.4746 -1.6221
34 1 1.3397 -6.8480 -1.0908
35 1 2.8679 -5.9444 -1.2223
36 1 2.9620 -7.3612 0.7635
37 1 1.4138 -6.6988 1.3479
38 1 2.8807 -7.8688 2.3848
39 1 3.8033 -10.1422 2.5366
40 1 6.2286 -10.5071 2.3576
41 1 8.8197 -6.6179 1.6928
42 1 11.1703 -7.7742 1.6158
43 1 10.7856 -10.4144 1.9362
44 1 8.2097 -10.8102 2.2118
45 1 6.8383 -6.3077 1.8489
46 1 1.5216 -4.0540 2.0511
47 1 3.1272 -3.3089 1.8407
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000999628224.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:53:14
Heat of formation + Delta-G solvation = 73.823587 kcal
Electronic energy + Delta-G solvation = -28628.869145 eV
Core-core repulsion = 24778.302604 eV
Total energy + Delta-G solvation = -3850.566540 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-41.92904 -40.51100 -38.63993 -37.29647 -34.69936 -33.54586 -32.35987 -31.73632
-31.19064 -29.39964 -29.14091 -28.10001 -25.80912 -24.15222 -23.55861 -23.30580
-21.94067 -21.09395 -20.32999 -20.02597 -19.43192 -18.34850 -17.14208 -16.90799
-16.40567 -15.98532 -15.54478 -15.21645 -15.09401 -14.62529 -14.50335 -14.27898
-14.05033 -13.88123 -13.74091 -13.46220 -13.42371 -12.96405 -12.75701 -12.61078
-12.53638 -12.42172 -12.29204 -12.11189 -11.74226 -11.31229 -11.09749 -10.87223
-10.71326 -10.62256 -10.19969 -10.13438 -9.88567 -9.86030 -9.65347 -9.40868
-9.11349 -8.53797 -8.42695 -8.31514 -7.02976 -5.81073 -3.11043 0.41576
0.69913 2.06039 2.45855 2.72680 2.79047 3.06386 3.43236 3.48571
3.49826 3.52211 4.18572 4.31323 4.49573 4.55926 4.66008 4.70654
4.76979 4.89054 4.89508 5.04794 5.09840 5.19147 5.22183 5.34590
5.43957 5.45356 5.48291 5.57121 5.63697 5.75204 5.80557 5.88596
5.91362 5.95814 5.97667 6.02249 6.11881 6.16440 6.24768 6.30187
6.43773 6.62172 6.66525 6.78283 6.88818 6.95318 7.11524 7.53004
7.70457 8.22543 8.37070 9.49068 10.02400 10.37751 11.41144
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.015664 B = 0.002500 C = 0.002245
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1787.154721 B =11196.581358 C =12467.954543
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.932 5.932
2 C -0.011 4.011
3 Si 0.907 3.093
4 H -0.279 1.279
5 H -0.291 1.291
6 H -0.291 1.291
7 C -0.242 4.242
8 H 0.072 0.928
9 N -0.718 5.718
10 C 0.168 3.832
11 H 0.051 0.949
12 C -0.126 4.126
13 C -0.131 4.131
14 C 0.091 3.909
15 N -0.596 5.596
16 C 0.551 3.449
17 O -0.531 6.531
18 C -0.091 4.091
19 C -0.107 4.107
20 C -0.097 4.097
21 C -0.123 4.123
22 C 0.133 3.867
23 N -0.397 5.397
24 C -0.012 4.012
25 C -0.192 4.192
26 C -0.190 4.190
27 C -0.018 4.018
28 C -0.087 4.087
29 C 0.092 3.908
30 H 0.255 0.745
31 H 0.386 0.614
32 H 0.062 0.938
33 H 0.068 0.932
34 H 0.073 0.927
35 H 0.065 0.935
36 H 0.093 0.907
37 H 0.071 0.929
38 H 0.143 0.857
39 H 0.139 0.861
40 H 0.133 0.867
41 H 0.167 0.833
42 H 0.141 0.859
43 H 0.140 0.860
44 H 0.164 0.836
45 H 0.140 0.860
46 H 0.064 0.936
47 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.627 -25.845 3.144 28.121
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.580 5.580
2 C -0.207 4.207
3 Si 0.737 3.263
4 H -0.204 1.204
5 H -0.218 1.218
6 H -0.218 1.218
7 C -0.373 4.373
8 H 0.090 0.910
9 N -0.358 5.358
10 C 0.057 3.943
11 H 0.069 0.931
12 C -0.165 4.165
13 C -0.170 4.170
14 C -0.032 4.032
15 N -0.329 5.329
16 C 0.339 3.661
17 O -0.409 6.409
18 C -0.095 4.095
19 C -0.126 4.126
20 C -0.116 4.116
21 C -0.143 4.143
22 C 0.041 3.959
23 N -0.068 5.068
24 C -0.138 4.138
25 C -0.215 4.215
26 C -0.214 4.214
27 C -0.145 4.145
28 C -0.107 4.107
29 C -0.032 4.032
30 H 0.065 0.935
31 H 0.220 0.780
32 H 0.080 0.920
33 H 0.087 0.913
34 H 0.092 0.908
35 H 0.084 0.916
36 H 0.110 0.890
37 H 0.089 0.911
38 H 0.161 0.839
39 H 0.157 0.843
40 H 0.151 0.849
41 H 0.184 0.816
42 H 0.159 0.841
43 H 0.158 0.842
44 H 0.182 0.818
45 H 0.158 0.842
46 H 0.083 0.917
47 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges 10.785 -25.095 3.374 27.522
hybrid contribution 0.103 0.920 0.049 0.927
sum 10.888 -24.175 3.423 26.733
Atomic orbital electron populations
1.69668 1.05121 1.25684 1.57509 1.24750 0.95529 0.97782 1.02629
0.86119 0.78995 0.83959 0.77183 1.20398 1.21822 1.21766 1.19316
0.91143 0.83938 1.42943 0.90975 1.42384 1.05807 0.99572 1.88078
1.20489 0.94969 0.86503 0.92334 0.93091 1.21833 0.98665 0.94074
1.01917 1.21826 1.00970 0.98309 0.95855 1.22202 0.97027 0.89865
0.94073 1.48171 1.18393 1.11492 1.54854 1.18224 0.81265 0.87848
0.78811 1.90812 1.58584 1.42832 1.48665 1.19862 0.93259 0.94068
1.02309 1.21655 1.00531 0.91790 0.98602 1.20967 0.94228 0.97266
0.99114 1.20961 0.93417 0.97855 1.02059 1.17740 0.81623 0.94454
1.02067 1.41640 1.03490 1.07678 1.54041 1.22034 0.87804 0.94825
1.09153 1.21021 0.97057 0.94314 1.09151 1.21004 0.94860 0.96591
1.08962 1.21874 0.93099 0.88824 1.10667 1.20845 0.94788 0.95319
0.99780 1.22864 0.97790 0.81220 1.01354 0.93497 0.78049 0.91974
0.91332 0.90837 0.91596 0.88958 0.91124 0.83926 0.84341 0.84906
0.81578 0.84083 0.84175 0.81824 0.84190 0.91746 0.88965
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -27.87 13.06 55.49 0.72 -27.15 16
2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16
3 Si 0.91 22.66 29.55 -169.99 -5.02 17.63 16
4 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16
5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16
6 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16
7 C -0.24 -6.73 9.93 -15.06 -0.15 -6.88 16
8 H 0.07 2.00 7.83 -52.48 -0.41 1.59 16
9 N -0.72 -17.63 5.13 -53.30 -0.27 -17.91 16
10 C 0.17 3.29 2.92 -67.81 -0.20 3.09 16
11 H 0.05 1.08 8.08 -51.92 -0.42 0.66 16
12 C -0.13 -1.92 5.36 -26.69 -0.14 -2.06 16
13 C -0.13 -1.50 6.06 -26.83 -0.16 -1.67 16
14 C 0.09 0.98 4.72 -3.93 -0.02 0.96 16
15 N -0.60 -8.91 2.98 -174.14 -0.52 -9.43 16
16 C 0.55 8.79 7.40 -12.32 -0.09 8.70 16
17 O -0.53 -10.70 16.21 5.32 0.09 -10.61 16
18 C -0.09 -1.11 5.33 -104.99 -0.56 -1.67 16
19 C -0.11 -0.96 7.36 -39.16 -0.29 -1.24 16
20 C -0.10 -0.68 10.03 -39.66 -0.40 -1.08 16
21 C -0.12 -0.97 9.45 -39.32 -0.37 -1.34 16
22 C 0.13 1.38 6.61 -83.64 -0.55 0.83 16
23 N -0.40 -4.14 2.97 -60.96 -0.18 -4.32 16
24 C -0.01 -0.12 10.73 -16.65 -0.18 -0.30 16
25 C -0.19 -1.86 10.86 -39.76 -0.43 -2.30 16
26 C -0.19 -1.71 10.86 -39.76 -0.43 -2.14 16
27 C -0.02 -0.16 10.73 -16.64 -0.18 -0.34 16
28 C -0.09 -1.04 9.01 -38.99 -0.35 -1.39 16
29 C 0.09 1.70 6.03 -3.72 -0.02 1.68 16
30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
31 H 0.39 9.93 7.80 -40.82 -0.32 9.61 16
32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
33 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16
34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16
36 H 0.09 0.81 4.40 -51.93 -0.23 0.59 16
37 H 0.07 0.65 8.04 -51.93 -0.42 0.24 16
38 H 0.14 1.06 5.91 -52.48 -0.31 0.75 16
39 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16
40 H 0.13 0.73 6.69 -52.48 -0.35 0.38 16
41 H 0.17 1.56 7.01 -52.49 -0.37 1.19 16
42 H 0.14 1.12 8.06 -52.48 -0.42 0.69 16
43 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16
44 H 0.16 0.96 7.00 -52.49 -0.37 0.60 16
45 H 0.14 1.75 6.62 -52.49 -0.35 1.40 16
46 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16
47 H 0.09 2.02 7.00 -51.93 -0.36 1.65 16
LS Contribution 379.67 15.07 5.72 5.72
Total: -1.00 -33.73 379.67 -10.51 -44.24
By element:
Atomic # 1 Polarization: 15.82 SS G_CDS: -6.42 Total: 9.40 kcal
Atomic # 6 Polarization: -2.95 SS G_CDS: -4.62 Total: -7.57 kcal
Atomic # 7 Polarization: -58.56 SS G_CDS: -0.25 Total: -58.81 kcal
Atomic # 8 Polarization: -10.70 SS G_CDS: 0.09 Total: -10.61 kcal
Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal
Total LS contribution 5.72 Total: 5.72 kcal
Total: -33.73 -10.51 -44.24 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000999628224.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 118.064 kcal
(2) G-P(sol) polarization free energy of solvation -33.734 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.330 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.507 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.240 kcal
(6) G-S(sol) free energy of system = (1) + (5) 73.824 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds