Wall clock time and date at job start Tue Mar 31 2020 22:53:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31613 * 1
3 3 Si 1.86807 * 119.99957 * 2 1
4 4 H 1.48500 * 109.46819 * 180.02562 * 3 2 1
5 5 H 1.48498 * 109.47157 * 299.99915 * 3 2 1
6 6 H 1.48496 * 109.46858 * 60.00414 * 3 2 1
7 7 C 1.38808 * 119.99929 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99924 * 180.02562 * 7 2 1
9 9 N 1.36934 * 120.00121 * 359.97438 * 7 2 1
10 10 C 1.46506 * 120.00197 * 180.02562 * 9 7 2
11 11 H 1.09008 * 109.49445 * 324.93262 * 10 9 7
12 12 C 1.53041 * 109.52531 * 204.85502 * 10 9 7
13 13 C 1.53037 * 109.53859 * 178.66305 * 12 10 9
14 14 C 1.52764 * 109.38168 * 61.24025 * 13 12 10
15 15 N 1.46934 * 109.00606 * 305.58651 * 14 13 12
16 16 C 1.34776 * 120.62732 * 233.58606 * 15 14 13
17 17 O 1.21553 * 119.99742 * 173.82049 * 16 15 14
18 18 C 1.47857 * 120.00028 * 354.09337 * 16 15 14
19 19 C 1.39613 * 120.11438 * 325.83245 * 18 16 15
20 20 C 1.37983 * 119.98775 * 179.74171 * 19 18 16
21 21 C 1.38267 * 120.20991 * 0.54025 * 20 19 18
22 22 C 1.38903 * 120.23485 * 359.71264 * 21 20 19
23 23 N 1.40219 * 119.99788 * 179.97438 * 22 21 20
24 24 C 1.36566 * 125.67091 * 179.71630 * 23 22 21
25 25 C 1.34851 * 108.20303 * 179.89791 * 24 23 22
26 26 C 1.40943 * 107.46719 * 0.36591 * 25 24 23
27 27 C 1.34858 * 107.46396 * 359.77399 * 26 25 24
28 28 C 1.38594 * 120.00724 * 0.03026 * 22 21 20
29 29 C 1.46920 * 118.73790 * 53.31206 * 15 14 13
30 30 H 0.97006 * 120.00453 * 359.97438 * 1 2 3
31 31 H 0.97004 * 120.00153 * 359.97438 * 9 7 2
32 32 H 1.09003 * 109.45313 * 298.68518 * 12 10 9
33 33 H 1.09000 * 109.45782 * 58.63995 * 12 10 9
34 34 H 1.09004 * 109.49494 * 181.31065 * 13 12 10
35 35 H 1.08994 * 109.50184 * 301.38153 * 13 12 10
36 36 H 1.08999 * 109.50840 * 185.70736 * 14 13 12
37 37 H 1.08997 * 109.43397 * 65.41812 * 14 13 12
38 38 H 1.08004 * 120.00572 * 359.97438 * 19 18 16
39 39 H 1.07994 * 119.89170 * 180.25538 * 20 19 18
40 40 H 1.08006 * 119.88310 * 179.70108 * 21 20 19
41 41 H 1.08000 * 125.89839 * 0.02562 * 24 23 22
42 42 H 1.08007 * 126.26663 * 180.14338 * 25 24 23
43 43 H 1.07994 * 126.26808 * 179.75075 * 26 25 24
44 44 H 1.07999 * 125.89497 * 179.97438 * 27 26 25
45 45 H 1.07999 * 120.10502 * 179.97438 * 28 22 21
46 46 H 1.09002 * 109.58556 * 66.43216 * 29 15 14
47 47 H 1.09000 * 109.58603 * 186.85526 * 29 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.7101 1.3464 -0.0006
5 1 1.8914 2.3965 -1.2125
6 1 1.8914 2.3964 1.2125
7 6 2.0102 -1.2021 -0.0005
8 1 3.0902 -1.2021 -0.0001
9 7 1.3255 -2.3880 -0.0005
10 6 2.0580 -3.6568 -0.0005
11 1 2.9683 -3.5513 -0.5909
12 6 1.1803 -4.7541 -0.6068
13 6 1.9571 -6.0723 -0.6375
14 6 2.3232 -6.4784 0.7889
15 7 3.0406 -5.3696 1.4329
16 6 4.2452 -5.5704 2.0032
17 8 4.8791 -4.6264 2.4328
18 6 4.7982 -6.9381 2.1007
19 6 3.9460 -8.0257 2.3007
20 6 4.4644 -9.3016 2.3860
21 6 5.8280 -9.5066 2.2852
22 6 6.6847 -8.4306 2.0915
23 7 8.0669 -8.6441 1.9906
24 6 9.0101 -7.6761 1.7952
25 6 10.2205 -8.2692 1.7552
26 6 10.0188 -9.6540 1.9235
27 6 8.6929 -9.8556 2.0651
28 6 6.1736 -7.1456 1.9991
29 6 2.4227 -4.0367 1.4380
30 1 -0.4851 0.8401 0.0004
31 1 0.3555 -2.3880 0.0002
32 1 0.2818 -4.8760 -0.0018
33 1 0.8990 -4.4746 -1.6221
34 1 1.3397 -6.8480 -1.0908
35 1 2.8679 -5.9444 -1.2223
36 1 2.9620 -7.3612 0.7635
37 1 1.4138 -6.6988 1.3479
38 1 2.8807 -7.8688 2.3848
39 1 3.8033 -10.1422 2.5366
40 1 6.2286 -10.5071 2.3576
41 1 8.8197 -6.6179 1.6928
42 1 11.1703 -7.7742 1.6158
43 1 10.7856 -10.4144 1.9362
44 1 8.2097 -10.8102 2.2118
45 1 6.8383 -6.3077 1.8489
46 1 1.5216 -4.0540 2.0511
47 1 3.1272 -3.3089 1.8407
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000999628224.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:53:13
Heat of formation + Delta-G solvation = 54.080263 kcal
Electronic energy + Delta-G solvation = -28629.725279 eV
Core-core repulsion = 24778.302604 eV
Total energy + Delta-G solvation = -3851.422675 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-42.64521 -41.60889 -39.56241 -38.63673 -36.34841 -34.54401 -33.74874 -32.81708
-32.48420 -30.50557 -29.82929 -29.45498 -26.98480 -25.95193 -24.45805 -24.20211
-23.25435 -22.14454 -21.18836 -20.99784 -20.39483 -19.35912 -19.13189 -17.91745
-17.23729 -17.09339 -16.81711 -16.50250 -15.96872 -15.91847 -15.60990 -15.44636
-15.30889 -15.14223 -14.82628 -14.63372 -14.40826 -14.12681 -14.04382 -13.73747
-13.51879 -13.29183 -13.22178 -13.05557 -12.94510 -12.81189 -12.52355 -12.45194
-12.20832 -12.02985 -11.89952 -11.71007 -11.38671 -11.20621 -11.06196 -10.74847
-10.20837 -9.80253 -9.24863 -9.06157 -9.03078 -8.02294 -5.31373 -0.33640
-0.05561 1.32233 1.41230 1.42500 1.52465 1.61128 1.81405 1.96155
2.02732 2.50198 2.67614 3.26825 3.31182 3.65298 3.70748 3.81005
3.93028 3.97763 4.03148 4.05102 4.12645 4.19026 4.25783 4.30133
4.34740 4.44954 4.56504 4.58717 4.66970 4.70911 4.77672 4.83695
4.86857 4.95086 5.01667 5.11048 5.15735 5.22006 5.28493 5.33744
5.35494 5.39987 5.43101 5.51696 5.63235 5.93746 6.17575 6.20824
6.33412 6.43250 6.99794 7.27659 7.99191 8.25256 9.20308
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.015664 B = 0.002500 C = 0.002245
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1787.154721 B =11196.581358 C =12467.954543
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.961 5.961
2 C -0.066 4.066
3 Si 0.967 3.033
4 H -0.276 1.276
5 H -0.286 1.286
6 H -0.290 1.290
7 C -0.245 4.245
8 H 0.062 0.938
9 N -0.728 5.728
10 C 0.166 3.834
11 H 0.026 0.974
12 C -0.118 4.118
13 C -0.123 4.123
14 C 0.085 3.915
15 N -0.594 5.594
16 C 0.545 3.455
17 O -0.592 6.592
18 C -0.110 4.110
19 C -0.100 4.100
20 C -0.078 4.078
21 C -0.110 4.110
22 C 0.121 3.879
23 N -0.405 5.405
24 C -0.044 4.044
25 C -0.199 4.199
26 C -0.204 4.204
27 C -0.016 4.016
28 C -0.108 4.108
29 C 0.107 3.893
30 H 0.254 0.746
31 H 0.379 0.621
32 H 0.073 0.927
33 H 0.060 0.940
34 H 0.117 0.883
35 H 0.055 0.945
36 H 0.122 0.878
37 H 0.101 0.899
38 H 0.165 0.835
39 H 0.186 0.814
40 H 0.167 0.833
41 H 0.159 0.841
42 H 0.151 0.849
43 H 0.162 0.838
44 H 0.200 0.800
45 H 0.114 0.886
46 H 0.068 0.932
47 H 0.046 0.954
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.937 -30.727 3.243 32.457
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.611 5.611
2 C -0.259 4.259
3 Si 0.796 3.204
4 H -0.201 1.201
5 H -0.213 1.213
6 H -0.217 1.217
7 C -0.377 4.377
8 H 0.080 0.920
9 N -0.368 5.368
10 C 0.057 3.943
11 H 0.044 0.956
12 C -0.156 4.156
13 C -0.161 4.161
14 C -0.035 4.035
15 N -0.325 5.325
16 C 0.335 3.665
17 O -0.473 6.473
18 C -0.114 4.114
19 C -0.119 4.119
20 C -0.096 4.096
21 C -0.130 4.130
22 C 0.029 3.971
23 N -0.077 5.077
24 C -0.171 4.171
25 C -0.223 4.223
26 C -0.227 4.227
27 C -0.142 4.142
28 C -0.129 4.129
29 C -0.019 4.019
30 H 0.063 0.937
31 H 0.212 0.788
32 H 0.092 0.908
33 H 0.079 0.921
34 H 0.135 0.865
35 H 0.074 0.926
36 H 0.140 0.860
37 H 0.119 0.881
38 H 0.182 0.818
39 H 0.203 0.797
40 H 0.184 0.816
41 H 0.176 0.824
42 H 0.169 0.831
43 H 0.180 0.820
44 H 0.217 0.783
45 H 0.132 0.868
46 H 0.086 0.914
47 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges 10.106 -30.045 3.454 31.887
hybrid contribution 0.393 2.322 0.025 2.355
sum 10.499 -27.723 3.478 29.848
Atomic orbital electron populations
1.69784 1.06203 1.26147 1.59011 1.25462 0.96423 1.00709 1.03336
0.85183 0.77941 0.80252 0.77061 1.20050 1.21317 1.21685 1.19510
0.90916 0.85550 1.41731 0.92016 1.42494 1.05557 1.00510 1.88288
1.20654 0.94577 0.86282 0.92824 0.95633 1.21747 0.98553 0.94285
1.01037 1.21835 1.00651 0.97085 0.96576 1.22632 0.98345 0.89016
0.93510 1.48185 1.18432 1.11048 1.54847 1.18941 0.80856 0.89111
0.77631 1.90770 1.60167 1.45179 1.51233 1.19542 0.93684 0.92613
1.05562 1.21909 1.01057 0.91471 0.97438 1.21468 0.94310 0.97475
0.96324 1.21448 0.93582 0.98352 0.99596 1.17918 0.82062 0.94443
1.02680 1.41788 1.03558 1.08119 1.54246 1.22160 0.88737 0.95149
1.11032 1.21325 0.97173 0.95265 1.08533 1.21360 0.95816 0.96464
1.09107 1.22507 0.93218 0.89342 1.09144 1.20723 0.94704 0.95846
1.01631 1.22278 0.96767 0.82744 1.00072 0.93749 0.78829 0.90839
0.92090 0.86511 0.92648 0.86040 0.88129 0.81803 0.79677 0.81565
0.82366 0.83126 0.82036 0.78334 0.86830 0.91374 0.93537
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.96 -58.92 13.06 21.65 0.28 -58.64 16
2 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16
3 Si 0.97 47.97 29.55 68.60 2.03 50.00 16
4 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16
5 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16
6 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16
7 C -0.25 -14.22 9.93 84.03 0.83 -13.39 16
8 H 0.06 3.63 7.83 -2.91 -0.02 3.61 16
9 N -0.73 -37.28 5.13 -322.56 -1.65 -38.93 16
10 C 0.17 6.75 2.92 45.07 0.13 6.89 16
11 H 0.03 1.15 8.08 -2.38 -0.02 1.13 16
12 C -0.12 -3.46 5.36 30.62 0.16 -3.30 16
13 C -0.12 -2.46 6.06 30.53 0.19 -2.28 16
14 C 0.09 1.56 4.72 86.22 0.41 1.97 16
15 N -0.59 -17.80 2.98 -823.13 -2.45 -20.25 16
16 C 0.54 18.18 7.40 86.79 0.64 18.82 16
17 O -0.59 -26.16 16.21 -3.88 -0.06 -26.22 16
18 C -0.11 -2.64 5.33 -20.10 -0.11 -2.75 16
19 C -0.10 -1.40 7.36 22.54 0.17 -1.23 16
20 C -0.08 -0.64 10.03 22.22 0.22 -0.41 16
21 C -0.11 -1.23 9.45 22.44 0.21 -1.02 16
22 C 0.12 2.33 6.61 38.04 0.25 2.58 16
23 N -0.40 -8.10 2.97 -346.79 -1.03 -9.13 16
24 C -0.04 -0.99 10.73 83.18 0.89 -0.09 16
25 C -0.20 -3.89 10.86 22.15 0.24 -3.65 16
26 C -0.20 -3.32 10.86 22.16 0.24 -3.08 16
27 C -0.02 -0.25 10.73 83.18 0.89 0.65 16
28 C -0.11 -2.68 9.01 22.65 0.20 -2.48 16
29 C 0.11 4.15 6.03 86.36 0.52 4.67 16
30 H 0.25 14.99 8.31 -92.70 -0.77 14.22 16
31 H 0.38 20.16 7.80 -92.71 -0.72 19.44 16
32 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16
33 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16
34 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16
35 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16
36 H 0.12 1.59 4.40 -2.39 -0.01 1.58 16
37 H 0.10 1.35 8.04 -2.39 -0.02 1.33 16
38 H 0.16 1.57 5.91 -2.91 -0.02 1.56 16
39 H 0.19 -0.06 8.06 -2.91 -0.02 -0.09 16
40 H 0.17 0.75 6.69 -2.91 -0.02 0.73 16
41 H 0.16 3.51 7.01 -2.91 -0.02 3.49 16
42 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16
43 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16
44 H 0.20 1.37 7.00 -2.91 -0.02 1.35 16
45 H 0.11 3.28 6.62 -2.91 -0.02 3.26 16
46 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16
47 H 0.05 2.22 7.00 -2.39 -0.02 2.20 16
Total: -1.00 -80.96 379.67 3.95 -77.01
By element:
Atomic # 1 Polarization: 27.42 SS G_CDS: 0.27 Total: 27.69 kcal
Atomic # 6 Polarization: -8.09 SS G_CDS: 6.57 Total: -1.52 kcal
Atomic # 7 Polarization: -122.10 SS G_CDS: -4.85 Total: -126.95 kcal
Atomic # 8 Polarization: -26.16 SS G_CDS: -0.06 Total: -26.22 kcal
Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 50.00 kcal
Total: -80.96 3.95 -77.01 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000999628224.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 131.087 kcal
(2) G-P(sol) polarization free energy of solvation -80.960 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.127 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.953 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.006 kcal
(6) G-S(sol) free energy of system = (1) + (5) 54.080 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds