Wall clock time and date at job start Tue Mar 31 2020 23:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36539 * 120.08874 * 2 1 4 4 C 1.40723 * 118.23950 * 180.02562 * 3 2 1 5 5 C 1.40420 * 121.28685 * 180.02562 * 4 3 2 6 6 C 1.36136 * 119.64702 * 180.02562 * 5 4 3 7 7 C 1.39433 * 120.92168 * 359.95588 * 6 5 4 8 8 C 1.35989 * 121.09023 * 0.02562 * 7 6 5 9 9 C 1.40833 * 119.73273 * 359.97438 * 8 7 6 10 10 N 1.33249 * 120.98436 * 180.27473 * 9 8 7 11 11 C 1.31900 * 121.29827 * 180.27614 * 10 9 8 12 12 C 1.48273 * 119.24031 * 179.71875 * 11 10 9 13 13 O 1.21499 * 120.00464 * 103.94882 * 12 11 10 14 14 N 1.34784 * 119.99773 * 283.93940 * 12 11 10 15 15 C 1.46923 * 120.62919 * 354.94199 * 14 12 11 16 16 C 1.53191 * 108.77776 * 126.40770 * 15 14 12 17 17 C 1.53039 * 109.31148 * 54.63298 * 16 15 14 18 18 C 1.53044 * 109.53788 * 298.63443 * 17 16 15 19 19 H 1.08993 * 109.49588 * 301.38307 * 18 17 16 20 20 N 1.46503 * 109.49571 * 181.31511 * 18 17 16 21 21 C 1.36937 * 119.99538 * 155.00325 * 20 18 17 22 22 H 1.08001 * 120.00103 * 359.97438 * 21 20 18 23 23 C 1.38812 * 119.99703 * 180.02562 * 21 20 18 24 24 N 1.31615 * 120.00450 * 359.71815 * 23 21 20 25 25 Si 1.86806 * 119.99958 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46857 * 59.99713 * 25 23 21 27 27 H 1.48494 * 109.46917 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.46921 * 300.00174 * 25 23 21 29 29 C 1.46925 * 120.62929 * 174.95827 * 14 12 11 30 30 H 1.08998 * 109.46938 * 274.81078 * 1 2 3 31 31 H 1.08998 * 109.46614 * 34.81008 * 1 2 3 32 32 H 1.08998 * 109.46945 * 154.81188 * 1 2 3 33 33 H 1.07996 * 120.87906 * 359.97438 * 3 2 1 34 34 H 1.07999 * 120.17759 * 359.95854 * 5 4 3 35 35 H 1.08000 * 119.53601 * 179.97438 * 6 5 4 36 36 H 1.08002 * 119.45729 * 180.02562 * 7 6 5 37 37 H 1.07996 * 120.14004 * 179.97438 * 8 7 6 38 38 H 1.08997 * 109.58915 * 6.61457 * 15 14 12 39 39 H 1.09008 * 109.58461 * 246.19849 * 15 14 12 40 40 H 1.08995 * 109.49461 * 294.68406 * 16 15 14 41 41 H 1.09001 * 109.49551 * 174.58243 * 16 15 14 42 42 H 1.08993 * 109.46082 * 178.61087 * 17 16 15 43 43 H 1.09005 * 109.44732 * 58.64589 * 17 16 15 44 44 H 0.96990 * 120.00102 * 335.00033 * 20 18 17 45 45 H 0.96995 * 120.00519 * 180.02562 * 24 23 21 46 46 H 1.08990 * 109.58513 * 113.80498 * 29 14 12 47 47 H 1.09002 * 109.58632 * 353.37370 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1916 1.1814 0.0000 4 6 3.5981 1.1360 -0.0006 5 6 4.3657 2.3118 -0.0001 6 6 5.7245 2.2290 -0.0011 7 6 6.3669 0.9914 -0.0018 8 6 5.6568 -0.1683 -0.0020 9 6 4.2491 -0.1255 -0.0008 10 7 3.5287 -1.2464 0.0045 11 6 2.2101 -1.2135 0.0002 12 6 1.4538 -2.4888 0.0002 13 8 0.9224 -2.8801 1.0203 14 7 1.3556 -3.2140 -1.1317 15 6 1.8969 -2.7021 -2.3980 16 6 2.8439 -3.7510 -2.9894 17 6 2.1058 -5.0857 -3.1152 18 6 1.6654 -5.5598 -1.7283 19 1 2.5393 -5.6649 -1.0854 20 7 0.9865 -6.8526 -1.8462 21 6 0.9560 -7.7097 -0.7786 22 1 1.4327 -7.4328 0.1500 23 6 0.3132 -8.9349 -0.8905 24 7 -0.2717 -9.2706 -2.0208 25 14 0.2721 -10.1045 0.5655 26 1 -0.4072 -9.4461 1.7103 27 1 -0.4701 -11.3350 0.1912 28 1 1.6605 -10.4617 0.9528 29 6 0.7049 -4.5313 -1.1226 30 1 -0.3633 0.0862 1.0240 31 1 -0.3632 0.8438 -0.5867 32 1 -0.3633 -0.9299 -0.4374 33 1 1.6675 2.1257 -0.0004 34 1 3.8806 3.2768 0.0001 35 1 6.3131 3.1345 -0.0012 36 1 7.4462 0.9533 -0.0023 37 1 6.1702 -1.1185 -0.0029 38 1 2.4443 -1.7777 -2.2143 39 1 1.0800 -2.5131 -3.0947 40 1 3.7065 -3.8727 -2.3344 41 1 3.1776 -3.4255 -3.9747 42 1 2.7698 -5.8275 -3.5586 43 1 1.2292 -4.9572 -3.7503 44 1 0.5587 -7.1014 -2.6803 45 1 -0.7211 -10.1266 -2.0989 46 1 -0.2089 -4.4915 -1.7152 47 1 0.4662 -4.8139 -0.0973 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999747029.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:32 Heat of formation + Delta-G solvation = 31.844417 kcal Electronic energy + Delta-G solvation = -29210.339355 eV Core-core repulsion = 25357.952461 eV Total energy + Delta-G solvation = -3852.386894 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.38023 -39.76843 -37.68922 -36.94672 -34.52318 -34.33684 -32.36193 -31.96360 -31.17736 -30.57523 -28.31902 -27.38632 -26.13486 -24.34247 -23.86888 -22.85491 -22.36028 -21.86664 -20.72165 -19.29479 -18.26131 -17.65240 -17.06550 -17.01399 -16.28904 -15.55072 -15.12630 -14.89992 -14.62924 -14.57077 -14.34934 -14.12534 -13.90901 -13.71963 -13.41645 -13.35937 -13.32736 -13.30305 -12.69615 -12.52127 -12.41596 -12.23673 -11.92561 -11.88652 -11.73202 -11.32712 -11.00241 -10.80153 -10.68110 -10.63295 -10.56580 -10.22157 -10.18705 -9.81761 -9.69885 -9.52577 -9.05644 -8.92163 -8.54627 -8.37261 -6.98625 -5.76771 -3.06430 0.03037 0.42584 1.68287 2.38966 2.66059 3.06758 3.48051 3.51498 3.53827 3.74651 4.02404 4.20015 4.33183 4.42487 4.55203 4.60428 4.69579 4.77056 4.93302 4.95247 5.03681 5.13962 5.19419 5.30181 5.39175 5.43930 5.49746 5.54812 5.57606 5.64087 5.71188 5.74032 5.83012 5.86007 5.92668 6.02428 6.08193 6.08826 6.19023 6.20046 6.23644 6.38817 6.47661 6.50640 6.71712 6.83780 7.01789 7.54344 7.55872 7.73828 8.22708 8.41523 9.53294 10.06909 10.42543 11.45374 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017730 B = 0.002676 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.828332 B =10461.864583 C =10704.973005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.107 4.107 3 C -0.063 4.063 4 C -0.092 4.092 5 C -0.100 4.100 6 C -0.112 4.112 7 C -0.107 4.107 8 C -0.083 4.083 9 C 0.123 3.877 10 N -0.438 5.438 11 C 0.141 3.859 12 C 0.572 3.428 13 O -0.524 6.524 14 N -0.590 5.590 15 C 0.112 3.888 16 C -0.128 4.128 17 C -0.125 4.125 18 C 0.169 3.831 19 H 0.053 0.947 20 N -0.717 5.717 21 C -0.243 4.243 22 H 0.071 0.929 23 C -0.010 4.010 24 N -0.933 5.933 25 Si 0.907 3.093 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.285 1.285 29 C 0.093 3.907 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.144 0.856 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.131 0.869 37 H 0.138 0.862 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.386 0.614 45 H 0.256 0.744 46 H 0.065 0.935 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.353 27.782 -1.495 29.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.109 4.109 3 C -0.089 4.089 4 C -0.094 4.094 5 C -0.119 4.119 6 C -0.130 4.130 7 C -0.127 4.127 8 C -0.102 4.102 9 C 0.000 4.000 10 N -0.147 5.147 11 C -0.015 4.015 12 C 0.356 3.644 13 O -0.399 6.399 14 N -0.323 5.323 15 C -0.012 4.012 16 C -0.167 4.167 17 C -0.164 4.164 18 C 0.057 3.943 19 H 0.071 0.929 20 N -0.357 5.357 21 C -0.374 4.374 22 H 0.089 0.911 23 C -0.206 4.206 24 N -0.581 5.581 25 Si 0.738 3.262 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.212 1.212 29 C -0.031 4.031 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.162 0.838 34 H 0.148 0.852 35 H 0.145 0.855 36 H 0.149 0.851 37 H 0.156 0.844 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.220 0.780 45 H 0.066 0.934 46 H 0.083 0.917 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.589 26.618 -0.791 28.303 hybrid contribution -0.552 0.090 0.515 0.760 sum 9.037 26.708 -0.276 28.196 Atomic orbital electron populations 1.20831 0.89360 1.03526 1.03500 1.20500 0.98023 0.92424 0.99981 1.21270 0.92463 0.98253 0.96897 1.18931 0.94143 0.94589 1.01709 1.20965 0.94092 0.96987 0.99869 1.20970 0.94649 0.98052 0.99310 1.20916 1.00504 0.91989 0.99247 1.20905 0.91088 0.99562 0.98604 1.18913 0.94258 0.87630 0.99224 1.67983 1.05924 1.30193 1.10637 1.21277 0.90099 0.93756 0.96321 1.17927 0.79972 0.82514 0.83976 1.90822 1.47207 1.69691 1.32157 1.48214 1.57022 1.19363 1.07694 1.21696 0.97175 0.96998 0.85291 1.21853 0.98586 0.95474 1.00755 1.21825 1.00138 0.95807 0.98587 1.20494 0.93930 0.85934 0.93916 0.92915 1.42368 1.65131 1.13535 1.14691 1.19237 1.29257 0.96449 0.92443 0.91066 1.24739 1.00602 0.98072 0.97209 1.69647 1.40717 1.22995 1.24705 0.86267 0.77563 0.80385 0.82017 1.21091 1.21686 1.21192 1.22904 0.96605 0.79463 1.04128 0.89960 0.90658 0.90934 0.83792 0.85177 0.85467 0.85148 0.84408 0.91018 0.91252 0.91204 0.91107 0.91303 0.92032 0.78042 0.93420 0.91687 0.88977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 9.67 36.01 0.35 -0.80 16 2 C -0.11 -1.25 5.89 -104.48 -0.62 -1.87 16 3 C -0.06 -0.60 9.55 -39.26 -0.37 -0.97 16 4 C -0.09 -0.94 5.75 -106.71 -0.61 -1.56 16 5 C -0.10 -0.75 9.77 -39.52 -0.39 -1.14 16 6 C -0.11 -0.75 9.95 -39.89 -0.40 -1.15 16 7 C -0.11 -0.80 9.94 -39.94 -0.40 -1.20 16 8 C -0.08 -0.84 9.99 -39.41 -0.39 -1.23 16 9 C 0.12 1.52 6.61 -84.85 -0.56 0.96 16 10 N -0.44 -6.52 9.98 -7.54 -0.08 -6.59 16 11 C 0.14 2.09 4.59 -82.96 -0.38 1.71 16 12 C 0.57 10.04 5.63 -12.13 -0.07 9.97 16 13 O -0.52 -11.07 16.54 5.37 0.09 -10.98 16 14 N -0.59 -9.71 2.97 -173.72 -0.52 -10.23 16 15 C 0.11 1.46 6.35 -3.71 -0.02 1.44 16 16 C -0.13 -1.69 6.08 -26.61 -0.16 -1.85 16 17 C -0.13 -2.02 5.35 -26.69 -0.14 -2.16 16 18 C 0.17 3.42 2.92 -67.80 -0.20 3.22 16 19 H 0.05 1.16 8.08 -51.93 -0.42 0.74 16 20 N -0.72 -17.94 5.12 -53.30 -0.27 -18.21 16 21 C -0.24 -6.84 9.93 -15.06 -0.15 -6.99 16 22 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 23 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 24 N -0.93 -28.13 13.06 55.49 0.72 -27.41 16 25 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 26 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 C 0.09 1.79 6.00 -3.71 -0.02 1.77 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.53 8.11 -51.93 -0.42 0.11 16 32 H 0.07 0.85 6.86 -51.93 -0.36 0.49 16 33 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 35 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 36 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 37 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 38 H 0.07 0.89 6.12 -51.93 -0.32 0.57 16 39 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.39 10.09 7.80 -40.82 -0.32 9.77 16 45 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 47 H 0.09 2.06 7.04 -51.93 -0.37 1.70 16 LS Contribution 385.45 15.07 5.81 5.81 Total: -1.00 -33.94 385.45 -10.72 -44.66 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -6.82 Total: 7.33 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -4.63 Total: -2.23 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: -0.14 Total: -62.44 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.94 -10.72 -44.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999747029.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.502 kcal (2) G-P(sol) polarization free energy of solvation -33.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds