Wall clock time and date at job start Tue Mar 31 2020 23:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36539 * 120.08874 * 2 1 4 4 C 1.40723 * 118.23950 * 180.02562 * 3 2 1 5 5 C 1.40420 * 121.28685 * 180.02562 * 4 3 2 6 6 C 1.36136 * 119.64702 * 180.02562 * 5 4 3 7 7 C 1.39433 * 120.92168 * 359.95588 * 6 5 4 8 8 C 1.35989 * 121.09023 * 0.02562 * 7 6 5 9 9 C 1.40833 * 119.73273 * 359.97438 * 8 7 6 10 10 N 1.33249 * 120.98436 * 180.27473 * 9 8 7 11 11 C 1.31900 * 121.29827 * 180.27614 * 10 9 8 12 12 C 1.48273 * 119.24031 * 179.71875 * 11 10 9 13 13 O 1.21499 * 120.00464 * 103.94882 * 12 11 10 14 14 N 1.34784 * 119.99773 * 283.93940 * 12 11 10 15 15 C 1.46923 * 120.62919 * 354.94199 * 14 12 11 16 16 C 1.53191 * 108.77776 * 126.40770 * 15 14 12 17 17 C 1.53039 * 109.31148 * 54.63298 * 16 15 14 18 18 C 1.53044 * 109.53788 * 298.63443 * 17 16 15 19 19 H 1.08993 * 109.49588 * 301.38307 * 18 17 16 20 20 N 1.46503 * 109.49571 * 181.31511 * 18 17 16 21 21 C 1.36937 * 119.99538 * 155.00325 * 20 18 17 22 22 H 1.08001 * 120.00103 * 359.97438 * 21 20 18 23 23 C 1.38812 * 119.99703 * 180.02562 * 21 20 18 24 24 N 1.31615 * 120.00450 * 359.71815 * 23 21 20 25 25 Si 1.86806 * 119.99958 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46857 * 59.99713 * 25 23 21 27 27 H 1.48494 * 109.46917 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.46921 * 300.00174 * 25 23 21 29 29 C 1.46925 * 120.62929 * 174.95827 * 14 12 11 30 30 H 1.08998 * 109.46938 * 274.81078 * 1 2 3 31 31 H 1.08998 * 109.46614 * 34.81008 * 1 2 3 32 32 H 1.08998 * 109.46945 * 154.81188 * 1 2 3 33 33 H 1.07996 * 120.87906 * 359.97438 * 3 2 1 34 34 H 1.07999 * 120.17759 * 359.95854 * 5 4 3 35 35 H 1.08000 * 119.53601 * 179.97438 * 6 5 4 36 36 H 1.08002 * 119.45729 * 180.02562 * 7 6 5 37 37 H 1.07996 * 120.14004 * 179.97438 * 8 7 6 38 38 H 1.08997 * 109.58915 * 6.61457 * 15 14 12 39 39 H 1.09008 * 109.58461 * 246.19849 * 15 14 12 40 40 H 1.08995 * 109.49461 * 294.68406 * 16 15 14 41 41 H 1.09001 * 109.49551 * 174.58243 * 16 15 14 42 42 H 1.08993 * 109.46082 * 178.61087 * 17 16 15 43 43 H 1.09005 * 109.44732 * 58.64589 * 17 16 15 44 44 H 0.96990 * 120.00102 * 335.00033 * 20 18 17 45 45 H 0.96995 * 120.00519 * 180.02562 * 24 23 21 46 46 H 1.08990 * 109.58513 * 113.80498 * 29 14 12 47 47 H 1.09002 * 109.58632 * 353.37370 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1916 1.1814 0.0000 4 6 3.5981 1.1360 -0.0006 5 6 4.3657 2.3118 -0.0001 6 6 5.7245 2.2290 -0.0011 7 6 6.3669 0.9914 -0.0018 8 6 5.6568 -0.1683 -0.0020 9 6 4.2491 -0.1255 -0.0008 10 7 3.5287 -1.2464 0.0045 11 6 2.2101 -1.2135 0.0002 12 6 1.4538 -2.4888 0.0002 13 8 0.9224 -2.8801 1.0203 14 7 1.3556 -3.2140 -1.1317 15 6 1.8969 -2.7021 -2.3980 16 6 2.8439 -3.7510 -2.9894 17 6 2.1058 -5.0857 -3.1152 18 6 1.6654 -5.5598 -1.7283 19 1 2.5393 -5.6649 -1.0854 20 7 0.9865 -6.8526 -1.8462 21 6 0.9560 -7.7097 -0.7786 22 1 1.4327 -7.4328 0.1500 23 6 0.3132 -8.9349 -0.8905 24 7 -0.2717 -9.2706 -2.0208 25 14 0.2721 -10.1045 0.5655 26 1 -0.4072 -9.4461 1.7103 27 1 -0.4701 -11.3350 0.1912 28 1 1.6605 -10.4617 0.9528 29 6 0.7049 -4.5313 -1.1226 30 1 -0.3633 0.0862 1.0240 31 1 -0.3632 0.8438 -0.5867 32 1 -0.3633 -0.9299 -0.4374 33 1 1.6675 2.1257 -0.0004 34 1 3.8806 3.2768 0.0001 35 1 6.3131 3.1345 -0.0012 36 1 7.4462 0.9533 -0.0023 37 1 6.1702 -1.1185 -0.0029 38 1 2.4443 -1.7777 -2.2143 39 1 1.0800 -2.5131 -3.0947 40 1 3.7065 -3.8727 -2.3344 41 1 3.1776 -3.4255 -3.9747 42 1 2.7698 -5.8275 -3.5586 43 1 1.2292 -4.9572 -3.7503 44 1 0.5587 -7.1014 -2.6803 45 1 -0.7211 -10.1266 -2.0989 46 1 -0.2089 -4.4915 -1.7152 47 1 0.4662 -4.8139 -0.0973 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999747029.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:31 Heat of formation + Delta-G solvation = 10.206358 kcal Electronic energy + Delta-G solvation = -29211.277651 eV Core-core repulsion = 25357.952461 eV Total energy + Delta-G solvation = -3853.325190 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.29641 -40.97301 -38.93494 -37.97729 -36.26858 -35.21005 -33.98853 -32.83687 -32.73698 -31.40490 -30.03596 -28.13792 -27.30421 -25.93337 -25.36282 -23.61921 -23.35265 -23.02243 -22.08444 -20.64247 -19.19602 -19.12535 -18.72730 -17.87451 -17.46728 -16.79548 -16.49691 -16.08227 -15.74691 -15.66007 -15.44241 -15.39039 -15.28058 -15.06930 -14.88031 -14.32995 -14.13880 -14.08029 -14.00914 -13.91578 -13.75161 -13.26216 -13.16020 -12.91525 -12.65652 -12.57259 -12.53260 -12.43629 -12.27050 -12.06392 -11.97398 -11.75308 -11.42000 -11.40172 -11.37522 -11.10975 -10.56273 -9.88344 -9.70911 -9.22336 -9.05911 -8.00277 -5.29799 -0.72059 -0.33790 0.96836 1.21199 1.42920 1.45850 1.52047 1.71118 1.88290 2.51712 2.92970 3.06555 3.32109 3.42667 3.61539 3.66540 3.67755 3.79245 3.92840 3.97191 4.06275 4.10993 4.20970 4.25640 4.31044 4.34572 4.40433 4.48667 4.49674 4.64694 4.65925 4.77050 4.79835 4.81323 4.89729 4.96731 5.02494 5.05268 5.08120 5.13610 5.31321 5.36376 5.39475 5.39850 5.46908 5.49638 5.51402 5.88171 6.21060 6.22276 6.66300 6.87661 7.29117 7.99472 8.26782 9.21960 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017730 B = 0.002676 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.828332 B =10461.864583 C =10704.973005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.124 4.124 3 C -0.042 4.042 4 C -0.103 4.103 5 C -0.096 4.096 6 C -0.107 4.107 7 C -0.090 4.090 8 C -0.115 4.115 9 C 0.097 3.903 10 N -0.472 5.472 11 C 0.118 3.882 12 C 0.569 3.431 13 O -0.576 6.576 14 N -0.588 5.588 15 C 0.111 3.889 16 C -0.118 4.118 17 C -0.115 4.115 18 C 0.169 3.831 19 H 0.027 0.973 20 N -0.726 5.726 21 C -0.249 4.249 22 H 0.063 0.937 23 C -0.065 4.065 24 N -0.962 5.962 25 Si 0.967 3.033 26 H -0.283 1.283 27 H -0.287 1.287 28 H -0.279 1.279 29 C 0.108 3.892 30 H 0.077 0.923 31 H 0.111 0.889 32 H 0.046 0.954 33 H 0.188 0.812 34 H 0.167 0.833 35 H 0.165 0.835 36 H 0.158 0.842 37 H 0.129 0.871 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.055 0.945 41 H 0.110 0.890 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.379 0.621 45 H 0.254 0.746 46 H 0.070 0.930 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.912 32.188 -2.445 34.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.127 4.127 3 C -0.068 4.068 4 C -0.104 4.104 5 C -0.114 4.114 6 C -0.124 4.124 7 C -0.110 4.110 8 C -0.133 4.133 9 C -0.026 4.026 10 N -0.182 5.182 11 C -0.036 4.036 12 C 0.356 3.644 13 O -0.454 6.454 14 N -0.320 5.320 15 C -0.011 4.011 16 C -0.156 4.156 17 C -0.153 4.153 18 C 0.059 3.941 19 H 0.045 0.955 20 N -0.366 5.366 21 C -0.380 4.380 22 H 0.081 0.919 23 C -0.258 4.258 24 N -0.611 5.611 25 Si 0.796 3.204 26 H -0.210 1.210 27 H -0.213 1.213 28 H -0.205 1.205 29 C -0.017 4.017 30 H 0.096 0.904 31 H 0.129 0.871 32 H 0.065 0.935 33 H 0.205 0.795 34 H 0.184 0.816 35 H 0.182 0.818 36 H 0.176 0.824 37 H 0.147 0.853 38 H 0.102 0.898 39 H 0.112 0.888 40 H 0.074 0.926 41 H 0.128 0.872 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.212 0.788 45 H 0.063 0.937 46 H 0.088 0.912 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.184 31.069 -1.763 33.068 hybrid contribution -0.840 -1.087 0.829 1.605 sum 10.344 29.982 -0.934 31.730 Atomic orbital electron populations 1.20822 0.88554 1.03650 1.03672 1.20608 0.98641 0.92084 1.01356 1.21715 0.92225 0.98849 0.93965 1.19252 0.94898 0.94753 1.01545 1.21391 0.94431 0.97244 0.98365 1.21456 0.94844 0.98873 0.97241 1.21322 1.01889 0.91458 0.96319 1.21014 0.90585 1.00601 1.01142 1.19295 0.95044 0.88012 1.00232 1.67822 1.06150 1.32312 1.11932 1.20863 0.90347 0.93026 0.99392 1.18514 0.79320 0.83421 0.83164 1.90768 1.49430 1.71319 1.33910 1.48216 1.56589 1.18074 1.09119 1.21947 0.98024 0.97219 0.83874 1.21813 0.97568 0.93642 1.02596 1.21717 1.00834 0.97281 0.95471 1.20607 0.92616 0.84506 0.96399 0.95456 1.42452 1.65585 1.14969 1.13613 1.19457 1.28533 0.97118 0.92931 0.91944 1.25467 1.00913 0.99637 0.99751 1.69772 1.41768 1.23294 1.26300 0.85315 0.77687 0.78360 0.79038 1.20987 1.21298 1.20485 1.22364 0.96685 0.81142 1.01504 0.90405 0.87071 0.93531 0.79494 0.81581 0.81760 0.82424 0.85275 0.89809 0.88769 0.92585 0.87168 0.91659 0.90770 0.78774 0.93712 0.91200 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.13 9.67 71.24 0.69 -1.44 16 2 C -0.12 -2.82 5.89 -19.77 -0.12 -2.93 16 3 C -0.04 -0.67 9.55 22.48 0.21 -0.45 16 4 C -0.10 -1.82 5.75 -21.22 -0.12 -1.95 16 5 C -0.10 -0.97 9.77 22.31 0.22 -0.75 16 6 C -0.11 -0.90 9.95 22.07 0.22 -0.68 16 7 C -0.09 -1.06 9.94 22.03 0.22 -0.84 16 8 C -0.11 -2.23 9.99 22.38 0.22 -2.01 16 9 C 0.10 2.36 6.61 40.48 0.27 2.63 16 10 N -0.47 -14.55 9.98 -177.76 -1.77 -16.33 16 11 C 0.12 3.62 4.59 42.29 0.19 3.81 16 12 C 0.57 21.41 5.63 86.91 0.49 21.90 16 13 O -0.58 -26.59 16.54 -3.71 -0.06 -26.66 16 14 N -0.59 -20.35 2.97 -821.82 -2.44 -22.80 16 15 C 0.11 2.83 6.35 86.36 0.55 3.38 16 16 C -0.12 -2.98 6.08 30.67 0.19 -2.80 16 17 C -0.11 -3.70 5.35 30.62 0.16 -3.54 16 18 C 0.17 7.20 2.92 45.07 0.13 7.33 16 19 H 0.03 1.29 8.08 -2.39 -0.02 1.27 16 20 N -0.73 -38.01 5.12 -322.56 -1.65 -39.66 16 21 C -0.25 -14.61 9.93 84.03 0.83 -13.78 16 22 H 0.06 3.70 7.83 -2.91 -0.02 3.68 16 23 C -0.06 -3.84 5.50 84.86 0.47 -3.37 16 24 N -0.96 -59.44 13.06 21.65 0.28 -59.16 16 25 Si 0.97 48.30 29.55 68.60 2.03 50.33 16 26 H -0.28 -13.99 7.11 99.48 0.71 -13.29 16 27 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 28 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 29 C 0.11 4.46 6.00 86.36 0.52 4.98 16 30 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.11 1.26 8.11 -2.39 -0.02 1.24 16 32 H 0.05 1.13 6.86 -2.39 -0.02 1.11 16 33 H 0.19 1.23 8.06 -2.91 -0.02 1.20 16 34 H 0.17 0.50 8.06 -2.91 -0.02 0.47 16 35 H 0.16 0.24 8.06 -2.91 -0.02 0.21 16 36 H 0.16 0.94 8.06 -2.91 -0.02 0.91 16 37 H 0.13 2.57 8.06 -2.91 -0.02 2.54 16 38 H 0.08 2.02 6.12 -2.39 -0.01 2.00 16 39 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 40 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 44 H 0.38 20.58 7.80 -92.72 -0.72 19.86 16 45 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 46 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 47 H 0.05 2.53 7.04 -2.39 -0.02 2.51 16 Total: -1.00 -80.62 385.45 1.99 -78.63 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: 0.26 Total: 26.16 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 5.35 Total: 9.49 kcal Atomic # 7 Polarization: -132.36 SS G_CDS: -5.59 Total: -137.94 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.06 Total: -26.66 kcal Atomic # 14 Polarization: 48.30 SS G_CDS: 2.03 Total: 50.33 kcal Total: -80.62 1.99 -78.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999747029.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.832 kcal (2) G-P(sol) polarization free energy of solvation -80.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds