Wall clock time and date at job start Tue Mar 31 2020 22:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 119.99914 * 2 1 4 4 H 1.48502 * 109.46721 * 85.36647 * 3 2 1 5 5 H 1.48498 * 109.46993 * 325.36537 * 3 2 1 6 6 H 1.48495 * 109.47043 * 205.36199 * 3 2 1 7 7 C 1.38812 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99918 * 197.95339 * 7 2 1 9 9 N 1.36932 * 120.00249 * 17.94732 * 7 2 1 10 10 C 1.46929 * 120.62979 * 27.30791 * 9 7 2 11 11 C 1.53622 * 108.54313 * 126.36900 * 10 9 7 12 12 C 1.53042 * 109.24061 * 54.85866 * 11 10 9 13 13 C 1.53046 * 109.53839 * 298.51349 * 12 11 10 14 14 H 1.09004 * 109.49487 * 301.41260 * 13 12 11 15 15 N 1.46501 * 109.49486 * 181.31752 * 13 12 11 16 16 C 1.34782 * 119.99654 * 155.16364 * 15 13 12 17 17 O 1.21544 * 119.99902 * 359.97438 * 16 15 13 18 18 C 1.47855 * 119.99810 * 179.97438 * 16 15 13 19 19 C 1.39621 * 120.11314 * 359.97438 * 18 16 15 20 20 C 1.37974 * 119.98609 * 179.97438 * 19 18 16 21 21 C 1.38269 * 120.21811 * 0.02686 * 20 19 18 22 22 C 1.38906 * 120.22390 * 359.96986 * 21 20 19 23 23 N 1.40236 * 119.99309 * 180.02562 * 22 21 20 24 24 C 1.36563 * 125.66524 * 179.69635 * 23 22 21 25 25 C 1.34858 * 108.19371 * 179.83137 * 24 23 22 26 26 C 1.40937 * 107.46757 * 0.42233 * 25 24 23 27 27 C 1.34849 * 107.47125 * 359.73914 * 26 25 24 28 28 C 1.38593 * 120.01544 * 359.73014 * 22 21 20 29 29 C 1.46929 * 120.63486 * 207.59455 * 9 7 2 30 30 H 0.97000 * 119.99991 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.59013 * 246.20755 * 10 9 7 32 32 H 1.09002 * 109.58481 * 6.62682 * 10 9 7 33 33 H 1.08997 * 109.63545 * 294.87197 * 11 10 9 34 34 H 1.08996 * 109.43586 * 174.72519 * 11 10 9 35 35 H 1.08995 * 109.46392 * 178.48870 * 12 11 10 36 36 H 1.09003 * 109.44924 * 58.52401 * 12 11 10 37 37 H 0.97001 * 120.00221 * 335.15692 * 15 13 12 38 38 H 1.07997 * 120.00861 * 359.97438 * 19 18 16 39 39 H 1.08001 * 119.89210 * 179.97438 * 20 19 18 40 40 H 1.07990 * 119.88913 * 179.97438 * 21 20 19 41 41 H 1.07996 * 125.90220 * 0.02562 * 24 23 22 42 42 H 1.08003 * 126.26380 * 180.16310 * 25 24 23 43 43 H 1.08004 * 126.26544 * 179.73613 * 26 25 24 44 44 H 1.07997 * 125.90491 * 179.97438 * 27 26 25 45 45 H 1.07997 * 120.11214 * 180.27463 * 28 22 21 46 46 H 1.09007 * 109.58157 * 353.37208 * 29 9 7 47 47 H 1.08997 * 109.58981 * 113.78940 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3997 2.1030 1.3956 5 1 1.5001 2.6224 -0.7957 6 1 3.5933 1.4139 -0.5997 7 6 2.0103 -1.2021 -0.0005 8 1 3.0509 -1.2250 0.2878 9 7 1.3757 -2.3590 -0.3665 10 6 0.2343 -2.3265 -1.2911 11 6 0.5196 -3.2896 -2.4535 12 6 0.8340 -4.6782 -1.8923 13 6 2.0833 -4.6035 -1.0114 14 1 2.9213 -4.2293 -1.5995 15 7 2.4016 -5.9390 -0.5000 16 6 3.6656 -6.2396 -0.1415 17 8 4.5413 -5.4029 -0.2428 18 6 3.9868 -7.5873 0.3751 19 6 2.9824 -8.5500 0.4929 20 6 3.2852 -9.8069 0.9748 21 6 4.5813 -10.1176 1.3428 22 6 5.5874 -9.1666 1.2292 23 7 6.9004 -9.4870 1.6032 24 6 7.9753 -8.6475 1.5346 25 6 9.0588 -9.3130 1.9838 26 6 8.6417 -10.6130 2.3338 27 6 7.3176 -10.6924 2.0912 28 6 5.2951 -7.9030 0.7404 29 6 1.8192 -3.6559 0.1629 30 1 -0.4850 0.8400 0.0004 31 1 -0.6692 -2.6388 -0.7675 32 1 0.1047 -1.3150 -1.6762 33 1 1.3723 -2.9278 -3.0280 34 1 -0.3564 -3.3481 -3.0994 35 1 1.0107 -5.3710 -2.7150 36 1 -0.0094 -5.0287 -1.2973 37 1 1.7027 -6.6068 -0.4195 38 1 1.9688 -8.3109 0.2070 39 1 2.5071 -10.5503 1.0657 40 1 4.8123 -11.1029 1.7196 41 1 7.9597 -7.6260 1.1843 42 1 10.0631 -8.9227 2.0574 43 1 9.2680 -11.4013 2.7248 44 1 6.6948 -11.5595 2.2541 45 1 6.0770 -7.1639 0.6473 46 1 2.7358 -3.5218 0.7376 47 1 1.0424 -4.0744 0.8028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007820606.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:53 Heat of formation + Delta-G solvation = 69.917967 kcal Electronic energy + Delta-G solvation = -28316.631574 eV Core-core repulsion = 24465.895673 eV Total energy + Delta-G solvation = -3850.735901 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.90486 -40.19551 -38.60309 -37.25518 -34.48966 -33.56209 -32.43524 -31.69917 -30.47971 -29.46760 -29.11200 -28.34007 -25.30129 -24.44959 -23.41110 -22.23285 -22.00640 -21.00904 -20.24542 -19.92404 -19.52627 -18.73481 -16.93092 -16.75726 -16.45800 -15.93423 -15.34522 -15.07437 -14.82943 -14.79525 -14.57465 -14.16002 -13.99886 -13.78312 -13.65655 -13.48858 -13.17607 -12.72914 -12.61907 -12.51420 -12.42401 -12.37258 -12.12904 -11.85290 -11.69696 -11.12403 -10.93130 -10.77991 -10.29073 -10.26845 -10.21588 -10.07000 -9.91972 -9.66266 -9.61903 -9.44417 -8.89353 -8.52707 -8.41632 -8.34561 -6.69169 -5.79308 -3.20655 0.38244 0.69870 2.06019 2.48316 2.73755 2.85002 3.20089 3.39332 3.46376 3.51088 3.61359 4.27715 4.33356 4.51090 4.55599 4.69356 4.75735 4.79379 4.92212 5.12389 5.21316 5.26029 5.34702 5.37793 5.46655 5.50905 5.58496 5.64727 5.68188 5.84951 5.89863 5.96713 6.03052 6.04033 6.11158 6.19635 6.25198 6.48762 6.57775 6.60731 6.63199 6.65960 6.80105 6.89778 6.94806 7.12375 7.33462 7.62434 7.62824 7.82942 8.29262 8.45154 9.21295 9.83665 10.39009 11.29460 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016397 B = 0.002335 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.240705 B =11988.545463 C =13276.893169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.250 4.250 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.167 3.833 11 C -0.140 4.140 12 C -0.115 4.115 13 C 0.125 3.875 14 H 0.088 0.912 15 N -0.714 5.714 16 C 0.552 3.448 17 O -0.527 6.527 18 C -0.095 4.095 19 C -0.101 4.101 20 C -0.096 4.096 21 C -0.121 4.121 22 C 0.132 3.868 23 N -0.397 5.397 24 C -0.011 4.011 25 C -0.192 4.192 26 C -0.190 4.190 27 C -0.019 4.019 28 C -0.083 4.083 29 C 0.142 3.858 30 H 0.253 0.747 31 H 0.020 0.980 32 H 0.090 0.910 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.394 0.606 38 H 0.134 0.866 39 H 0.138 0.862 40 H 0.133 0.867 41 H 0.168 0.832 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.164 0.836 45 H 0.145 0.855 46 H 0.058 0.942 47 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.999 -24.538 0.633 25.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.085 0.915 9 N -0.310 5.310 10 C 0.041 3.959 11 C -0.179 4.179 12 C -0.153 4.153 13 C 0.020 3.980 14 H 0.106 0.894 15 N -0.364 5.364 16 C 0.338 3.662 17 O -0.404 6.404 18 C -0.099 4.099 19 C -0.120 4.120 20 C -0.115 4.115 21 C -0.141 4.141 22 C 0.040 3.960 23 N -0.069 5.069 24 C -0.138 4.138 25 C -0.216 4.216 26 C -0.214 4.214 27 C -0.145 4.145 28 C -0.104 4.104 29 C 0.014 3.986 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.108 0.892 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.229 0.771 38 H 0.152 0.848 39 H 0.156 0.844 40 H 0.151 0.849 41 H 0.185 0.815 42 H 0.159 0.841 43 H 0.158 0.842 44 H 0.182 0.818 45 H 0.162 0.838 46 H 0.076 0.924 47 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 7.255 -23.668 0.483 24.760 hybrid contribution 0.028 0.435 0.141 0.458 sum 7.283 -23.233 0.624 24.355 Atomic orbital electron populations 1.70045 1.05251 1.25498 1.54045 1.25014 0.95288 0.98426 1.00932 0.86281 0.79348 0.83575 0.77644 1.21449 1.21527 1.20311 1.19218 0.93031 0.84763 1.40962 0.91544 1.44024 1.35999 1.00910 1.50085 1.20947 0.88553 0.98708 0.87692 1.22252 1.00497 0.95062 1.00139 1.21685 0.96690 0.98731 0.98199 1.21817 0.98059 0.80785 0.97308 0.89381 1.46065 1.09033 1.15812 1.65527 1.18104 0.83143 0.86683 0.78271 1.90818 1.46831 1.49259 1.53526 1.19916 0.93621 0.94656 1.01739 1.21402 0.99070 0.93006 0.98508 1.20949 0.95786 0.96718 0.98018 1.20975 0.92327 0.98969 1.01865 1.17767 0.83223 0.94745 1.00256 1.41648 1.05171 1.11697 1.48373 1.22055 0.85783 0.97552 1.08366 1.21022 0.98506 0.95082 1.06965 1.21002 0.94191 0.98254 1.07950 1.21873 0.96290 0.89286 1.07071 1.20913 0.97126 0.94713 0.97607 1.21182 0.97983 0.86873 0.92546 0.93665 0.96231 0.89184 0.92343 0.92673 0.93030 0.92197 0.77109 0.84825 0.84376 0.84883 0.81485 0.84073 0.84179 0.81835 0.83758 0.92353 0.96455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.23 11.20 55.49 0.62 -25.60 16 2 C 0.00 0.05 4.90 -17.43 -0.09 -0.04 16 3 Si 0.90 22.07 29.59 -169.99 -5.03 17.04 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.25 -7.04 9.58 -15.06 -0.14 -7.18 16 8 H 0.07 1.89 7.89 -52.49 -0.41 1.47 16 9 N -0.59 -14.87 2.99 -172.06 -0.51 -15.39 16 10 C 0.17 3.89 5.34 -3.49 -0.02 3.87 16 11 C -0.14 -2.55 6.10 -26.39 -0.16 -2.71 16 12 C -0.11 -1.79 5.35 -26.69 -0.14 -1.93 16 13 C 0.13 2.20 2.60 -67.81 -0.18 2.03 16 14 H 0.09 1.78 7.58 -51.93 -0.39 1.39 16 15 N -0.71 -9.96 5.03 -54.63 -0.27 -10.23 16 16 C 0.55 8.45 7.74 -12.32 -0.10 8.36 16 17 O -0.53 -10.32 16.01 5.33 0.09 -10.23 16 18 C -0.10 -1.14 5.87 -104.99 -0.62 -1.76 16 19 C -0.10 -0.87 9.54 -39.16 -0.37 -1.25 16 20 C -0.10 -0.69 10.02 -39.67 -0.40 -1.08 16 21 C -0.12 -0.98 9.45 -39.32 -0.37 -1.35 16 22 C 0.13 1.39 6.61 -83.63 -0.55 0.83 16 23 N -0.40 -4.20 2.97 -60.96 -0.18 -4.38 16 24 C -0.01 -0.12 10.73 -16.64 -0.18 -0.30 16 25 C -0.19 -1.89 10.86 -39.76 -0.43 -2.32 16 26 C -0.19 -1.73 10.86 -39.76 -0.43 -2.16 16 27 C -0.02 -0.17 10.73 -16.64 -0.18 -0.35 16 28 C -0.08 -1.00 9.00 -38.99 -0.35 -1.35 16 29 C 0.14 3.07 6.09 -3.71 -0.02 3.05 16 30 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 2.37 6.03 -51.93 -0.31 2.05 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.39 4.09 6.63 -40.82 -0.27 3.82 16 38 H 0.13 0.85 6.40 -52.49 -0.34 0.51 16 39 H 0.14 0.58 8.06 -52.49 -0.42 0.15 16 40 H 0.13 0.76 6.69 -52.49 -0.35 0.40 16 41 H 0.17 1.59 7.00 -52.49 -0.37 1.22 16 42 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 43 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 44 H 0.16 0.99 7.00 -52.49 -0.37 0.62 16 45 H 0.14 1.82 6.29 -52.49 -0.33 1.49 16 46 H 0.06 1.36 7.93 -51.93 -0.41 0.95 16 47 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 381.28 15.07 5.75 5.75 Total: -1.00 -33.58 381.28 -10.77 -44.35 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -6.50 Total: 4.34 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -4.73 Total: -5.64 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: -0.35 Total: -55.60 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.58 -10.77 -44.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007820606.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.269 kcal (2) G-P(sol) polarization free energy of solvation -33.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds