Wall clock time and date at job start Tue Mar 31 2020 22:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 119.99914 * 2 1 4 4 H 1.48502 * 109.46721 * 85.36647 * 3 2 1 5 5 H 1.48498 * 109.46993 * 325.36537 * 3 2 1 6 6 H 1.48495 * 109.47043 * 205.36199 * 3 2 1 7 7 C 1.38812 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99918 * 197.95339 * 7 2 1 9 9 N 1.36932 * 120.00249 * 17.94732 * 7 2 1 10 10 C 1.46929 * 120.62979 * 27.30791 * 9 7 2 11 11 C 1.53622 * 108.54313 * 126.36900 * 10 9 7 12 12 C 1.53042 * 109.24061 * 54.85866 * 11 10 9 13 13 C 1.53046 * 109.53839 * 298.51349 * 12 11 10 14 14 H 1.09004 * 109.49487 * 301.41260 * 13 12 11 15 15 N 1.46501 * 109.49486 * 181.31752 * 13 12 11 16 16 C 1.34782 * 119.99654 * 155.16364 * 15 13 12 17 17 O 1.21544 * 119.99902 * 359.97438 * 16 15 13 18 18 C 1.47855 * 119.99810 * 179.97438 * 16 15 13 19 19 C 1.39621 * 120.11314 * 359.97438 * 18 16 15 20 20 C 1.37974 * 119.98609 * 179.97438 * 19 18 16 21 21 C 1.38269 * 120.21811 * 0.02686 * 20 19 18 22 22 C 1.38906 * 120.22390 * 359.96986 * 21 20 19 23 23 N 1.40236 * 119.99309 * 180.02562 * 22 21 20 24 24 C 1.36563 * 125.66524 * 179.69635 * 23 22 21 25 25 C 1.34858 * 108.19371 * 179.83137 * 24 23 22 26 26 C 1.40937 * 107.46757 * 0.42233 * 25 24 23 27 27 C 1.34849 * 107.47125 * 359.73914 * 26 25 24 28 28 C 1.38593 * 120.01544 * 359.73014 * 22 21 20 29 29 C 1.46929 * 120.63486 * 207.59455 * 9 7 2 30 30 H 0.97000 * 119.99991 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.59013 * 246.20755 * 10 9 7 32 32 H 1.09002 * 109.58481 * 6.62682 * 10 9 7 33 33 H 1.08997 * 109.63545 * 294.87197 * 11 10 9 34 34 H 1.08996 * 109.43586 * 174.72519 * 11 10 9 35 35 H 1.08995 * 109.46392 * 178.48870 * 12 11 10 36 36 H 1.09003 * 109.44924 * 58.52401 * 12 11 10 37 37 H 0.97001 * 120.00221 * 335.15692 * 15 13 12 38 38 H 1.07997 * 120.00861 * 359.97438 * 19 18 16 39 39 H 1.08001 * 119.89210 * 179.97438 * 20 19 18 40 40 H 1.07990 * 119.88913 * 179.97438 * 21 20 19 41 41 H 1.07996 * 125.90220 * 0.02562 * 24 23 22 42 42 H 1.08003 * 126.26380 * 180.16310 * 25 24 23 43 43 H 1.08004 * 126.26544 * 179.73613 * 26 25 24 44 44 H 1.07997 * 125.90491 * 179.97438 * 27 26 25 45 45 H 1.07997 * 120.11214 * 180.27463 * 28 22 21 46 46 H 1.09007 * 109.58157 * 353.37208 * 29 9 7 47 47 H 1.08997 * 109.58981 * 113.78940 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3997 2.1030 1.3956 5 1 1.5001 2.6224 -0.7957 6 1 3.5933 1.4139 -0.5997 7 6 2.0103 -1.2021 -0.0005 8 1 3.0509 -1.2250 0.2878 9 7 1.3757 -2.3590 -0.3665 10 6 0.2343 -2.3265 -1.2911 11 6 0.5196 -3.2896 -2.4535 12 6 0.8340 -4.6782 -1.8923 13 6 2.0833 -4.6035 -1.0114 14 1 2.9213 -4.2293 -1.5995 15 7 2.4016 -5.9390 -0.5000 16 6 3.6656 -6.2396 -0.1415 17 8 4.5413 -5.4029 -0.2428 18 6 3.9868 -7.5873 0.3751 19 6 2.9824 -8.5500 0.4929 20 6 3.2852 -9.8069 0.9748 21 6 4.5813 -10.1176 1.3428 22 6 5.5874 -9.1666 1.2292 23 7 6.9004 -9.4870 1.6032 24 6 7.9753 -8.6475 1.5346 25 6 9.0588 -9.3130 1.9838 26 6 8.6417 -10.6130 2.3338 27 6 7.3176 -10.6924 2.0912 28 6 5.2951 -7.9030 0.7404 29 6 1.8192 -3.6559 0.1629 30 1 -0.4850 0.8400 0.0004 31 1 -0.6692 -2.6388 -0.7675 32 1 0.1047 -1.3150 -1.6762 33 1 1.3723 -2.9278 -3.0280 34 1 -0.3564 -3.3481 -3.0994 35 1 1.0107 -5.3710 -2.7150 36 1 -0.0094 -5.0287 -1.2973 37 1 1.7027 -6.6068 -0.4195 38 1 1.9688 -8.3109 0.2070 39 1 2.5071 -10.5503 1.0657 40 1 4.8123 -11.1029 1.7196 41 1 7.9597 -7.6260 1.1843 42 1 10.0631 -8.9227 2.0574 43 1 9.2680 -11.4013 2.7248 44 1 6.6948 -11.5595 2.2541 45 1 6.0770 -7.1639 0.6473 46 1 2.7358 -3.5218 0.7376 47 1 1.0424 -4.0744 0.8028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007820606.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:52 Heat of formation + Delta-G solvation = 50.563731 kcal Electronic energy + Delta-G solvation = -28317.470837 eV Core-core repulsion = 24465.895673 eV Total energy + Delta-G solvation = -3851.575164 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.62348 -41.31971 -39.63612 -38.73901 -36.05855 -34.56709 -33.91492 -32.52729 -32.35791 -30.62674 -29.80810 -29.48989 -27.28492 -25.45617 -24.17376 -23.90250 -23.39574 -22.05679 -21.25120 -20.99894 -20.60172 -19.72883 -18.74991 -17.79519 -17.42590 -17.08249 -16.75476 -16.32228 -15.96092 -15.89750 -15.76712 -15.41511 -15.24229 -15.03967 -14.83577 -14.60281 -14.43059 -14.21523 -14.06351 -13.51353 -13.42239 -13.27929 -13.16169 -13.05797 -12.81116 -12.75980 -12.59152 -12.45755 -12.16130 -11.99393 -11.78611 -11.61256 -11.33194 -11.06632 -10.93882 -10.64979 -10.30207 -10.08506 -9.25238 -9.07220 -8.72534 -7.93631 -5.38094 -0.38263 -0.05604 1.32709 1.41567 1.42925 1.54248 1.74198 1.85320 2.02410 2.06683 2.48104 2.76146 3.20377 3.44633 3.65197 3.72188 3.82148 3.84397 4.02194 4.04961 4.08973 4.11973 4.23106 4.25373 4.43589 4.46012 4.53109 4.58371 4.68061 4.78486 4.79067 4.89633 4.95967 4.99664 5.10423 5.11472 5.16368 5.21786 5.25390 5.28533 5.33447 5.41393 5.52064 5.60837 5.62260 5.75064 5.93521 6.17484 6.33910 6.42331 6.49787 7.09893 7.16212 7.79816 8.29167 9.11960 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016397 B = 0.002335 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.240705 B =11988.545463 C =13276.893169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.043 4.043 3 Si 0.964 3.036 4 H -0.284 1.284 5 H -0.283 1.283 6 H -0.277 1.277 7 C -0.269 4.269 8 H 0.050 0.950 9 N -0.607 5.607 10 C 0.170 3.830 11 C -0.130 4.130 12 C -0.104 4.104 13 C 0.141 3.859 14 H 0.056 0.944 15 N -0.697 5.697 16 C 0.550 3.450 17 O -0.584 6.584 18 C -0.117 4.117 19 C -0.091 4.091 20 C -0.083 4.083 21 C -0.110 4.110 22 C 0.117 3.883 23 N -0.405 5.405 24 C -0.043 4.043 25 C -0.199 4.199 26 C -0.203 4.203 27 C -0.018 4.018 28 C -0.105 4.105 29 C 0.144 3.856 30 H 0.253 0.747 31 H 0.008 0.992 32 H 0.055 0.945 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.417 0.583 38 H 0.162 0.838 39 H 0.183 0.817 40 H 0.165 0.835 41 H 0.160 0.840 42 H 0.152 0.848 43 H 0.162 0.838 44 H 0.199 0.801 45 H 0.118 0.882 46 H 0.026 0.974 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.448 -28.515 0.456 29.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.239 4.239 3 Si 0.791 3.209 4 H -0.211 1.211 5 H -0.209 1.209 6 H -0.202 1.202 7 C -0.399 4.399 8 H 0.068 0.932 9 N -0.331 5.331 10 C 0.045 3.955 11 C -0.170 4.170 12 C -0.142 4.142 13 C 0.035 3.965 14 H 0.075 0.925 15 N -0.349 5.349 16 C 0.338 3.662 17 O -0.465 6.465 18 C -0.120 4.120 19 C -0.109 4.109 20 C -0.101 4.101 21 C -0.129 4.129 22 C 0.025 3.975 23 N -0.077 5.077 24 C -0.170 4.170 25 C -0.223 4.223 26 C -0.227 4.227 27 C -0.144 4.144 28 C -0.126 4.126 29 C 0.017 3.983 30 H 0.062 0.938 31 H 0.026 0.974 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.255 0.745 38 H 0.180 0.820 39 H 0.200 0.800 40 H 0.183 0.817 41 H 0.178 0.822 42 H 0.169 0.831 43 H 0.180 0.820 44 H 0.215 0.785 45 H 0.136 0.864 46 H 0.044 0.956 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 5.677 -27.703 0.303 28.280 hybrid contribution 0.542 1.588 0.272 1.700 sum 6.218 -26.115 0.575 26.851 Atomic orbital electron populations 1.70163 1.06290 1.26048 1.54775 1.25695 0.96134 1.01148 1.00954 0.85329 0.78133 0.79813 0.77595 1.21119 1.20851 1.20214 1.19362 0.92722 0.86551 1.41246 0.93177 1.44249 1.36470 1.01336 1.51077 1.20846 0.87519 0.98316 0.88842 1.22090 1.01397 0.95253 0.98217 1.21624 0.95771 0.97730 0.99047 1.21307 0.98236 0.81561 0.95402 0.92530 1.45761 1.09439 1.14803 1.64891 1.18721 0.82701 0.87667 0.77127 1.90790 1.48488 1.51350 1.55836 1.19647 0.94641 0.93591 1.04170 1.21740 0.99254 0.92747 0.97208 1.21452 0.96310 0.96605 0.95709 1.21450 0.91943 0.99468 1.00046 1.17951 0.83973 0.94714 1.00857 1.41797 1.05127 1.12181 1.48638 1.22185 0.86788 0.97983 1.10039 1.21328 0.98810 0.95769 1.06416 1.21358 0.94833 0.98306 1.08203 1.22497 0.96789 0.89433 1.05678 1.20818 0.96926 0.95461 0.99369 1.21213 0.96392 0.86573 0.94091 0.93778 0.97362 0.92682 0.93534 0.89484 0.89227 0.90109 0.74450 0.82012 0.79964 0.81709 0.82240 0.83053 0.82024 0.78453 0.86380 0.95561 0.95791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.25 11.20 21.65 0.24 -55.01 16 2 C -0.04 -2.51 4.90 84.86 0.42 -2.09 16 3 Si 0.96 46.74 29.59 68.60 2.03 48.77 16 4 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 5 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 6 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 7 C -0.27 -15.82 9.58 84.03 0.81 -15.01 16 8 H 0.05 3.04 7.89 -2.91 -0.02 3.01 16 9 N -0.61 -31.92 2.99 -698.26 -2.09 -34.01 16 10 C 0.17 8.07 5.34 86.51 0.46 8.53 16 11 C -0.13 -4.57 6.10 30.82 0.19 -4.38 16 12 C -0.10 -2.94 5.35 30.62 0.16 -2.78 16 13 C 0.14 4.95 2.60 45.07 0.12 5.07 16 14 H 0.06 2.38 7.58 -2.38 -0.02 2.36 16 15 N -0.70 -18.73 5.03 -445.02 -2.24 -20.97 16 16 C 0.55 17.30 7.74 86.79 0.67 17.97 16 17 O -0.58 -24.74 16.01 -3.85 -0.06 -24.80 16 18 C -0.12 -2.75 5.87 -20.10 -0.12 -2.87 16 19 C -0.09 -1.25 9.54 22.54 0.21 -1.03 16 20 C -0.08 -0.76 10.02 22.21 0.22 -0.54 16 21 C -0.11 -1.33 9.45 22.44 0.21 -1.12 16 22 C 0.12 2.34 6.61 38.04 0.25 2.60 16 23 N -0.41 -8.39 2.97 -346.78 -1.03 -9.42 16 24 C -0.04 -0.99 10.73 83.18 0.89 -0.10 16 25 C -0.20 -3.99 10.86 22.15 0.24 -3.74 16 26 C -0.20 -3.42 10.86 22.15 0.24 -3.18 16 27 C -0.02 -0.29 10.73 83.18 0.89 0.60 16 28 C -0.10 -2.64 9.00 22.65 0.20 -2.43 16 29 C 0.14 6.46 6.09 86.36 0.53 6.98 16 30 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 31 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.05 2.98 6.03 -2.39 -0.01 2.97 16 33 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.08 2.02 8.14 -2.39 -0.02 2.01 16 37 H 0.42 7.30 6.63 -92.71 -0.61 6.69 16 38 H 0.16 1.23 6.40 -2.91 -0.02 1.21 16 39 H 0.18 0.18 8.06 -2.91 -0.02 0.15 16 40 H 0.17 0.94 6.69 -2.92 -0.02 0.92 16 41 H 0.16 3.61 7.00 -2.91 -0.02 3.59 16 42 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 43 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 44 H 0.20 1.54 7.00 -2.91 -0.02 1.52 16 45 H 0.12 3.46 6.29 -2.91 -0.02 3.44 16 46 H 0.03 1.30 7.93 -2.38 -0.02 1.28 16 47 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -80.08 381.28 3.83 -76.25 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.38 Total: 16.73 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: 6.60 Total: 2.47 kcal Atomic # 7 Polarization: -114.30 SS G_CDS: -5.12 Total: -119.41 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.06 Total: -24.80 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -80.08 3.83 -76.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007820606.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.812 kcal (2) G-P(sol) polarization free energy of solvation -80.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds