Wall clock time and date at job start Tue Mar 31 2020 22:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 120.00257 * 2 1 4 4 H 1.48502 * 109.46811 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46769 * 300.00179 * 3 2 1 6 6 H 1.48497 * 109.46873 * 59.99891 * 3 2 1 7 7 C 1.38813 * 119.99807 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00106 * 197.36478 * 7 2 1 9 9 N 1.36938 * 119.99782 * 17.36650 * 7 2 1 10 10 C 1.46925 * 120.62861 * 207.69234 * 9 7 2 11 11 C 1.53191 * 108.77709 * 233.58379 * 10 9 7 12 12 C 1.53037 * 109.34126 * 305.38416 * 11 10 9 13 13 C 1.53040 * 109.54039 * 61.30994 * 12 11 10 14 14 H 1.09002 * 109.49372 * 58.65360 * 13 12 11 15 15 N 1.46493 * 109.49742 * 178.71520 * 13 12 11 16 16 C 1.34781 * 120.00297 * 204.93743 * 15 13 12 17 17 O 1.21545 * 119.99280 * 0.02562 * 16 15 13 18 18 C 1.47860 * 120.00110 * 180.02562 * 16 15 13 19 19 C 1.39616 * 120.11050 * 359.97438 * 18 16 15 20 20 C 1.37976 * 119.98210 * 180.02562 * 19 18 16 21 21 C 1.38268 * 120.21433 * 0.02562 * 20 19 18 22 22 C 1.38901 * 120.23181 * 359.68393 * 21 20 19 23 23 N 1.40229 * 120.00012 * 180.29849 * 22 21 20 24 24 C 1.36562 * 125.67255 * 179.97438 * 23 22 21 25 25 C 1.34847 * 108.20295 * 179.83050 * 24 23 22 26 26 C 1.40939 * 107.46826 * 0.42560 * 25 24 23 27 27 C 1.34851 * 107.46632 * 359.73328 * 26 25 24 28 28 C 1.38590 * 120.00913 * 0.59795 * 22 21 20 29 29 C 1.46921 * 120.63461 * 27.66875 * 9 7 2 30 30 H 0.97002 * 119.99496 * 359.97438 * 1 2 3 31 31 H 1.09007 * 109.58864 * 353.37721 * 10 9 7 32 32 H 1.09002 * 109.58891 * 113.79924 * 10 9 7 33 33 H 1.09008 * 109.49442 * 65.31685 * 11 10 9 34 34 H 1.09002 * 109.49651 * 185.37881 * 11 10 9 35 35 H 1.09004 * 109.42988 * 301.30707 * 12 11 10 36 36 H 1.08997 * 109.48314 * 181.35309 * 12 11 10 37 37 H 0.97003 * 120.00057 * 24.93950 * 15 13 12 38 38 H 1.07995 * 120.01365 * 0.03483 * 19 18 16 39 39 H 1.07996 * 119.89515 * 179.97438 * 20 19 18 40 40 H 1.08001 * 119.88470 * 179.97438 * 21 20 19 41 41 H 1.08004 * 125.89824 * 359.96556 * 24 23 22 42 42 H 1.08002 * 126.26870 * 180.15885 * 25 24 23 43 43 H 1.07998 * 126.27015 * 179.73358 * 26 25 24 44 44 H 1.08003 * 125.90477 * 180.02562 * 27 26 25 45 45 H 1.08003 * 120.11112 * 179.69380 * 28 22 21 46 46 H 1.08999 * 109.58540 * 6.62270 * 29 9 7 47 47 H 1.09001 * 109.70461 * 246.27734 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0533 -1.2237 0.2786 9 7 1.3723 -2.3609 -0.3550 10 6 1.8191 -3.6548 0.1787 11 6 2.0740 -4.6095 -0.9919 12 6 0.8188 -4.6889 -1.8638 13 6 0.5006 -3.3032 -2.4302 14 1 1.3489 -2.9450 -3.0134 15 7 -0.6832 -3.3862 -3.2892 16 6 -0.8703 -2.4791 -4.2683 17 8 -0.0566 -1.5924 -4.4387 18 6 -2.0654 -2.5625 -5.1350 19 6 -3.0012 -3.5804 -4.9415 20 6 -4.1151 -3.6561 -5.7521 21 6 -4.3086 -2.7267 -6.7574 22 6 -3.3864 -1.7068 -6.9539 23 7 -3.5906 -0.7632 -7.9708 24 6 -2.7630 0.2826 -8.2648 25 6 -3.2927 0.9599 -9.3035 26 6 -4.4953 0.3166 -9.6590 27 6 -4.6533 -0.7338 -8.8282 28 6 -2.2611 -1.6253 -6.1490 29 6 0.2278 -2.3338 -1.2759 30 1 -0.4849 0.8401 0.0004 31 1 2.7398 -3.5179 0.7459 32 1 1.0466 -4.0692 0.8266 33 1 2.9079 -4.2393 -1.5883 34 1 2.3137 -5.6009 -0.6072 35 1 -0.0202 -5.0362 -1.2608 36 1 0.9895 -5.3861 -2.6840 37 1 -1.3324 -4.0941 -3.1534 38 1 -2.8533 -4.3083 -4.1575 39 1 -4.8379 -4.4443 -5.6015 40 1 -5.1822 -2.7913 -7.3891 41 1 -1.8421 0.5241 -7.7548 42 1 -2.8745 1.8376 -9.7739 43 1 -5.1672 0.6108 -10.4516 44 1 -5.4775 -1.4317 -8.8392 45 1 -1.5405 -0.8358 -6.3035 46 1 0.0986 -1.3252 -1.6685 47 1 -0.6758 -2.6389 -0.7482 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007820607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:56 Heat of formation + Delta-G solvation = 70.360890 kcal Electronic energy + Delta-G solvation = -28716.240860 eV Core-core repulsion = 24865.524166 eV Total energy + Delta-G solvation = -3850.716694 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.80613 -40.02924 -38.47884 -37.19223 -34.30831 -33.44072 -32.65810 -31.62898 -30.07785 -29.44230 -29.01652 -28.39350 -25.28717 -24.34400 -23.30206 -22.26310 -21.92099 -20.88202 -20.14667 -19.79379 -19.44905 -18.64936 -16.82972 -16.72816 -16.33562 -15.85769 -15.23721 -15.01005 -14.86321 -14.54386 -14.35401 -14.08087 -13.98339 -13.67467 -13.63152 -13.43901 -13.07529 -12.64872 -12.52957 -12.44042 -12.37684 -12.30774 -12.03518 -11.90390 -11.57410 -11.03326 -10.80257 -10.72892 -10.51201 -10.24346 -10.11112 -10.04300 -9.95198 -9.59617 -9.51972 -9.31076 -8.61222 -8.44037 -8.43768 -8.24367 -6.67227 -5.76327 -3.19464 0.51128 0.82318 2.16746 2.58709 2.82240 3.00681 3.36516 3.43275 3.50472 3.51887 3.77640 4.39118 4.45279 4.54100 4.66265 4.82063 4.86198 4.90798 5.02949 5.23464 5.31060 5.32926 5.37920 5.45949 5.52001 5.57619 5.60343 5.64448 5.76785 5.96796 6.02513 6.04321 6.06011 6.10731 6.12704 6.29636 6.37238 6.39916 6.45107 6.66097 6.72135 6.74135 6.86347 6.93771 6.99201 7.22115 7.26508 7.70671 7.79608 7.85429 8.46087 8.51685 9.22093 9.86186 10.40611 11.31668 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012214 B = 0.002931 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.975898 B = 9549.964063 C =11244.940272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.006 3.994 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.256 4.256 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.142 3.858 11 C -0.131 4.131 12 C -0.116 4.116 13 C 0.116 3.884 14 H 0.084 0.916 15 N -0.712 5.712 16 C 0.551 3.449 17 O -0.524 6.524 18 C -0.092 4.092 19 C -0.101 4.101 20 C -0.097 4.097 21 C -0.123 4.123 22 C 0.132 3.868 23 N -0.396 5.396 24 C -0.010 4.010 25 C -0.193 4.193 26 C -0.191 4.191 27 C -0.019 4.019 28 C -0.083 4.083 29 C 0.166 3.834 30 H 0.253 0.747 31 H 0.056 0.944 32 H 0.018 0.982 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.392 0.608 38 H 0.134 0.866 39 H 0.138 0.862 40 H 0.133 0.867 41 H 0.168 0.832 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.164 0.836 45 H 0.145 0.855 46 H 0.095 0.905 47 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.503 -9.844 -15.188 20.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.193 4.193 3 Si 0.731 3.269 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.217 1.217 7 C -0.386 4.386 8 H 0.085 0.915 9 N -0.311 5.311 10 C 0.015 3.985 11 C -0.171 4.171 12 C -0.154 4.154 13 C 0.011 3.989 14 H 0.102 0.898 15 N -0.362 5.362 16 C 0.337 3.663 17 O -0.400 6.400 18 C -0.096 4.096 19 C -0.120 4.120 20 C -0.115 4.115 21 C -0.143 4.143 22 C 0.039 3.961 23 N -0.068 5.068 24 C -0.137 4.137 25 C -0.217 4.217 26 C -0.215 4.215 27 C -0.145 4.145 28 C -0.103 4.103 29 C 0.039 3.961 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.036 0.964 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.226 0.774 38 H 0.151 0.849 39 H 0.155 0.845 40 H 0.150 0.850 41 H 0.185 0.815 42 H 0.159 0.841 43 H 0.158 0.842 44 H 0.181 0.819 45 H 0.162 0.838 46 H 0.113 0.887 47 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -9.933 -9.234 -15.058 20.265 hybrid contribution -0.088 0.548 0.042 0.557 sum -10.021 -8.686 -15.016 20.034 Atomic orbital electron populations 1.70026 1.05344 1.25455 1.53428 1.25040 0.95278 0.98524 1.00471 0.86242 0.79423 0.83956 0.77260 1.20171 1.21412 1.21740 1.19186 0.92765 0.84794 1.41809 0.91514 1.43972 1.36004 1.01661 1.49465 1.20964 0.97763 0.86852 0.92872 1.22003 0.96932 0.99391 0.98754 1.21679 0.99023 0.95921 0.98802 1.22040 0.86790 0.97079 0.92955 0.89815 1.45991 1.26380 1.30629 1.33236 1.18065 0.85349 0.82323 0.80576 1.90828 1.44956 1.33744 1.70484 1.19953 0.96232 0.96441 0.96965 1.21393 0.93751 0.97527 0.99320 1.20930 0.97567 0.98613 0.94433 1.20949 0.99013 0.94456 0.99869 1.17758 0.96368 0.91240 0.90689 1.41650 1.19205 1.21380 1.24582 1.22062 0.98772 0.91165 1.01651 1.21007 0.97949 1.02750 0.99980 1.20989 0.99724 0.98034 1.02747 1.21864 0.93930 1.03291 0.95450 1.20922 0.96137 0.99540 0.93741 1.21088 0.88785 0.98987 0.87217 0.93705 0.92571 0.96383 0.92079 0.92558 0.92216 0.93027 0.77376 0.84871 0.84456 0.84956 0.81489 0.84115 0.84225 0.81866 0.83780 0.88676 0.96449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.86 11.19 55.49 0.62 -26.24 16 2 C 0.01 0.17 4.91 -17.43 -0.09 0.08 16 3 Si 0.90 22.59 29.59 -169.99 -5.03 17.56 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.26 -7.18 9.59 -15.06 -0.14 -7.33 16 8 H 0.07 1.83 7.89 -52.49 -0.41 1.42 16 9 N -0.59 -14.87 2.99 -172.32 -0.52 -15.39 16 10 C 0.14 2.90 6.52 -3.71 -0.02 2.88 16 11 C -0.13 -2.17 6.08 -26.61 -0.16 -2.33 16 12 C -0.12 -1.81 5.36 -26.69 -0.14 -1.95 16 13 C 0.12 2.23 2.60 -67.82 -0.18 2.05 16 14 H 0.08 1.83 7.58 -51.93 -0.39 1.44 16 15 N -0.71 -11.36 5.03 -54.63 -0.27 -11.63 16 16 C 0.55 9.71 7.74 -12.32 -0.10 9.61 16 17 O -0.52 -11.63 16.01 5.33 0.09 -11.54 16 18 C -0.09 -1.28 5.87 -104.99 -0.62 -1.89 16 19 C -0.10 -1.03 9.54 -39.16 -0.37 -1.41 16 20 C -0.10 -0.82 10.02 -39.67 -0.40 -1.22 16 21 C -0.12 -1.15 9.45 -39.33 -0.37 -1.53 16 22 C 0.13 1.57 6.61 -83.64 -0.55 1.02 16 23 N -0.40 -4.73 2.97 -60.96 -0.18 -4.91 16 24 C -0.01 -0.12 10.73 -16.65 -0.18 -0.30 16 25 C -0.19 -2.13 10.86 -39.76 -0.43 -2.56 16 26 C -0.19 -1.94 10.86 -39.76 -0.43 -2.37 16 27 C -0.02 -0.19 10.73 -16.64 -0.18 -0.37 16 28 C -0.08 -1.15 9.00 -39.00 -0.35 -1.50 16 29 C 0.17 4.02 4.89 -3.72 -0.02 4.00 16 30 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.06 1.13 7.93 -51.92 -0.41 0.72 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.39 4.75 6.63 -40.82 -0.27 4.48 16 38 H 0.13 1.05 6.40 -52.49 -0.34 0.71 16 39 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.13 0.91 6.69 -52.49 -0.35 0.55 16 41 H 0.17 1.85 7.01 -52.48 -0.37 1.48 16 42 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 43 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.16 1.16 7.00 -52.48 -0.37 0.79 16 45 H 0.14 2.11 6.29 -52.48 -0.33 1.78 16 46 H 0.10 2.73 6.04 -51.93 -0.31 2.42 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 381.24 15.07 5.75 5.75 Total: -1.00 -34.52 381.24 -10.78 -45.30 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -6.50 Total: 6.20 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -4.73 Total: -5.10 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: -0.35 Total: -58.17 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.03 Total: 17.56 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.52 -10.78 -45.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007820607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.662 kcal (2) G-P(sol) polarization free energy of solvation -34.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds