Wall clock time and date at job start Tue Mar 31 2020 22:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 120.00257 * 2 1 4 4 H 1.48502 * 109.46811 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46769 * 300.00179 * 3 2 1 6 6 H 1.48497 * 109.46873 * 59.99891 * 3 2 1 7 7 C 1.38813 * 119.99807 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00106 * 197.36478 * 7 2 1 9 9 N 1.36938 * 119.99782 * 17.36650 * 7 2 1 10 10 C 1.46925 * 120.62861 * 207.69234 * 9 7 2 11 11 C 1.53191 * 108.77709 * 233.58379 * 10 9 7 12 12 C 1.53037 * 109.34126 * 305.38416 * 11 10 9 13 13 C 1.53040 * 109.54039 * 61.30994 * 12 11 10 14 14 H 1.09002 * 109.49372 * 58.65360 * 13 12 11 15 15 N 1.46493 * 109.49742 * 178.71520 * 13 12 11 16 16 C 1.34781 * 120.00297 * 204.93743 * 15 13 12 17 17 O 1.21545 * 119.99280 * 0.02562 * 16 15 13 18 18 C 1.47860 * 120.00110 * 180.02562 * 16 15 13 19 19 C 1.39616 * 120.11050 * 359.97438 * 18 16 15 20 20 C 1.37976 * 119.98210 * 180.02562 * 19 18 16 21 21 C 1.38268 * 120.21433 * 0.02562 * 20 19 18 22 22 C 1.38901 * 120.23181 * 359.68393 * 21 20 19 23 23 N 1.40229 * 120.00012 * 180.29849 * 22 21 20 24 24 C 1.36562 * 125.67255 * 179.97438 * 23 22 21 25 25 C 1.34847 * 108.20295 * 179.83050 * 24 23 22 26 26 C 1.40939 * 107.46826 * 0.42560 * 25 24 23 27 27 C 1.34851 * 107.46632 * 359.73328 * 26 25 24 28 28 C 1.38590 * 120.00913 * 0.59795 * 22 21 20 29 29 C 1.46921 * 120.63461 * 27.66875 * 9 7 2 30 30 H 0.97002 * 119.99496 * 359.97438 * 1 2 3 31 31 H 1.09007 * 109.58864 * 353.37721 * 10 9 7 32 32 H 1.09002 * 109.58891 * 113.79924 * 10 9 7 33 33 H 1.09008 * 109.49442 * 65.31685 * 11 10 9 34 34 H 1.09002 * 109.49651 * 185.37881 * 11 10 9 35 35 H 1.09004 * 109.42988 * 301.30707 * 12 11 10 36 36 H 1.08997 * 109.48314 * 181.35309 * 12 11 10 37 37 H 0.97003 * 120.00057 * 24.93950 * 15 13 12 38 38 H 1.07995 * 120.01365 * 0.03483 * 19 18 16 39 39 H 1.07996 * 119.89515 * 179.97438 * 20 19 18 40 40 H 1.08001 * 119.88470 * 179.97438 * 21 20 19 41 41 H 1.08004 * 125.89824 * 359.96556 * 24 23 22 42 42 H 1.08002 * 126.26870 * 180.15885 * 25 24 23 43 43 H 1.07998 * 126.27015 * 179.73358 * 26 25 24 44 44 H 1.08003 * 125.90477 * 180.02562 * 27 26 25 45 45 H 1.08003 * 120.11112 * 179.69380 * 28 22 21 46 46 H 1.08999 * 109.58540 * 6.62270 * 29 9 7 47 47 H 1.09001 * 109.70461 * 246.27734 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0533 -1.2237 0.2786 9 7 1.3723 -2.3609 -0.3550 10 6 1.8191 -3.6548 0.1787 11 6 2.0740 -4.6095 -0.9919 12 6 0.8188 -4.6889 -1.8638 13 6 0.5006 -3.3032 -2.4302 14 1 1.3489 -2.9450 -3.0134 15 7 -0.6832 -3.3862 -3.2892 16 6 -0.8703 -2.4791 -4.2683 17 8 -0.0566 -1.5924 -4.4387 18 6 -2.0654 -2.5625 -5.1350 19 6 -3.0012 -3.5804 -4.9415 20 6 -4.1151 -3.6561 -5.7521 21 6 -4.3086 -2.7267 -6.7574 22 6 -3.3864 -1.7068 -6.9539 23 7 -3.5906 -0.7632 -7.9708 24 6 -2.7630 0.2826 -8.2648 25 6 -3.2927 0.9599 -9.3035 26 6 -4.4953 0.3166 -9.6590 27 6 -4.6533 -0.7338 -8.8282 28 6 -2.2611 -1.6253 -6.1490 29 6 0.2278 -2.3338 -1.2759 30 1 -0.4849 0.8401 0.0004 31 1 2.7398 -3.5179 0.7459 32 1 1.0466 -4.0692 0.8266 33 1 2.9079 -4.2393 -1.5883 34 1 2.3137 -5.6009 -0.6072 35 1 -0.0202 -5.0362 -1.2608 36 1 0.9895 -5.3861 -2.6840 37 1 -1.3324 -4.0941 -3.1534 38 1 -2.8533 -4.3083 -4.1575 39 1 -4.8379 -4.4443 -5.6015 40 1 -5.1822 -2.7913 -7.3891 41 1 -1.8421 0.5241 -7.7548 42 1 -2.8745 1.8376 -9.7739 43 1 -5.1672 0.6108 -10.4516 44 1 -5.4775 -1.4317 -8.8392 45 1 -1.5405 -0.8358 -6.3035 46 1 0.0986 -1.3252 -1.6685 47 1 -0.6758 -2.6389 -0.7482 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007820607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:55 Heat of formation + Delta-G solvation = 49.588368 kcal Electronic energy + Delta-G solvation = -28717.141624 eV Core-core repulsion = 24865.524166 eV Total energy + Delta-G solvation = -3851.617458 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.63762 -41.29504 -39.63186 -38.72709 -35.94675 -34.66928 -34.11912 -32.58362 -31.91728 -30.74198 -29.82225 -29.55308 -27.27500 -25.46696 -24.18076 -23.96684 -23.31122 -22.04084 -21.21315 -21.01081 -20.59284 -19.74020 -18.77619 -17.82749 -17.42691 -17.12929 -16.77805 -16.20812 -15.92645 -15.89066 -15.76465 -15.40952 -15.28529 -15.04369 -14.77501 -14.61641 -14.44192 -14.17022 -14.05599 -13.52587 -13.50168 -13.29208 -13.17493 -12.99105 -12.80788 -12.70207 -12.53356 -12.47461 -12.26613 -12.07014 -11.72105 -11.63829 -11.29438 -11.03872 -10.95113 -10.59926 -10.30509 -10.07595 -9.26811 -9.08649 -8.72492 -7.92937 -5.38017 -0.38607 -0.06944 1.31863 1.36955 1.41885 1.50156 1.73910 1.85811 2.01119 2.11049 2.45845 2.75755 3.23337 3.45627 3.63847 3.74989 3.81715 3.90619 4.02415 4.03668 4.10541 4.12622 4.23674 4.24818 4.43070 4.46632 4.55423 4.59643 4.67159 4.76633 4.81033 4.89756 4.95629 5.07998 5.13302 5.18660 5.20035 5.20743 5.26785 5.30587 5.32165 5.39038 5.51133 5.58603 5.61421 5.74430 5.92452 6.15849 6.32759 6.41198 6.52831 7.08182 7.20252 7.82267 8.30529 9.11680 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012214 B = 0.002931 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.975898 B = 9549.964063 C =11244.940272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.052 4.052 3 Si 0.959 3.041 4 H -0.262 1.262 5 H -0.301 1.301 6 H -0.284 1.284 7 C -0.262 4.262 8 H 0.069 0.931 9 N -0.610 5.610 10 C 0.135 3.865 11 C -0.122 4.122 12 C -0.106 4.106 13 C 0.130 3.870 14 H 0.050 0.950 15 N -0.697 5.697 16 C 0.546 3.454 17 O -0.586 6.586 18 C -0.117 4.117 19 C -0.091 4.091 20 C -0.081 4.081 21 C -0.109 4.109 22 C 0.118 3.882 23 N -0.405 5.405 24 C -0.046 4.046 25 C -0.198 4.198 26 C -0.203 4.203 27 C -0.017 4.017 28 C -0.108 4.108 29 C 0.178 3.822 30 H 0.246 0.754 31 H 0.055 0.945 32 H 0.024 0.976 33 H 0.049 0.951 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.415 0.585 38 H 0.162 0.838 39 H 0.186 0.814 40 H 0.169 0.831 41 H 0.156 0.844 42 H 0.152 0.848 43 H 0.165 0.835 44 H 0.201 0.799 45 H 0.114 0.886 46 H 0.040 0.960 47 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.805 -13.572 -16.104 24.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.247 4.247 3 Si 0.788 3.212 4 H -0.186 1.186 5 H -0.228 1.228 6 H -0.211 1.211 7 C -0.392 4.392 8 H 0.086 0.914 9 N -0.334 5.334 10 C 0.010 3.990 11 C -0.161 4.161 12 C -0.144 4.144 13 C 0.024 3.976 14 H 0.068 0.932 15 N -0.348 5.348 16 C 0.334 3.666 17 O -0.467 6.467 18 C -0.121 4.121 19 C -0.110 4.110 20 C -0.099 4.099 21 C -0.129 4.129 22 C 0.026 3.974 23 N -0.078 5.078 24 C -0.173 4.173 25 C -0.222 4.222 26 C -0.226 4.226 27 C -0.143 4.143 28 C -0.129 4.129 29 C 0.051 3.949 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.042 0.958 33 H 0.068 0.932 34 H 0.118 0.882 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.253 0.747 38 H 0.179 0.821 39 H 0.203 0.797 40 H 0.186 0.814 41 H 0.173 0.827 42 H 0.170 0.830 43 H 0.182 0.818 44 H 0.217 0.783 45 H 0.132 0.868 46 H 0.059 0.941 47 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -12.240 -13.032 -15.963 23.968 hybrid contribution 0.577 1.671 0.300 1.793 sum -11.663 -11.361 -15.663 22.593 Atomic orbital electron populations 1.70174 1.06648 1.25439 1.55313 1.25780 0.96060 1.01561 1.01337 0.85322 0.79044 0.80280 0.76597 1.18604 1.22813 1.21083 1.19527 0.93049 0.86229 1.40398 0.91352 1.44262 1.35986 1.02774 1.50392 1.21202 0.97627 0.85485 0.94708 1.21909 0.96986 1.00238 0.97010 1.21655 0.99268 0.93551 0.99940 1.21564 0.86753 0.98355 0.90919 0.93215 1.45745 1.26040 1.30905 1.32138 1.18782 0.85837 0.81240 0.80769 1.90789 1.47451 1.36224 1.72263 1.19687 0.96158 0.98894 0.97320 1.21733 0.93062 0.96270 0.99962 1.21467 0.97085 0.98801 0.92543 1.21460 0.98790 0.92734 0.99866 1.17939 0.96435 0.92352 0.90684 1.41802 1.19690 1.21279 1.24995 1.22155 0.99485 0.92671 1.02946 1.21323 0.98480 1.02941 0.99437 1.21362 0.99610 0.98070 1.03574 1.22529 0.93845 1.03632 0.94248 1.20804 0.97103 0.99612 0.95333 1.20780 0.88220 0.97457 0.88446 0.94503 0.92664 0.95765 0.93192 0.88175 0.90234 0.89352 0.74686 0.82082 0.79671 0.81395 0.82679 0.83011 0.81797 0.78256 0.86833 0.94134 0.97905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.67 11.19 21.65 0.24 -58.43 16 2 C -0.05 -3.11 4.91 84.86 0.42 -2.69 16 3 Si 0.96 48.53 29.59 68.60 2.03 50.56 16 4 H -0.26 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.30 -15.71 7.11 99.48 0.71 -15.00 16 6 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 7 C -0.26 -15.19 9.59 84.03 0.81 -14.39 16 8 H 0.07 3.85 7.89 -2.91 -0.02 3.82 16 9 N -0.61 -31.72 2.99 -699.11 -2.09 -33.81 16 10 C 0.13 5.40 6.52 86.36 0.56 5.96 16 11 C -0.12 -3.71 6.08 30.67 0.19 -3.53 16 12 C -0.11 -3.00 5.36 30.62 0.16 -2.84 16 13 C 0.13 5.06 2.60 45.07 0.12 5.18 16 14 H 0.05 2.29 7.58 -2.39 -0.02 2.27 16 15 N -0.70 -22.30 5.03 -445.04 -2.24 -24.54 16 16 C 0.55 20.40 7.74 86.79 0.67 21.07 16 17 O -0.59 -28.82 16.01 -3.86 -0.06 -28.88 16 18 C -0.12 -3.32 5.87 -20.10 -0.12 -3.44 16 19 C -0.09 -1.61 9.54 22.54 0.21 -1.40 16 20 C -0.08 -0.98 10.02 22.21 0.22 -0.75 16 21 C -0.11 -1.63 9.45 22.44 0.21 -1.42 16 22 C 0.12 2.77 6.61 38.04 0.25 3.02 16 23 N -0.41 -9.63 2.97 -346.78 -1.03 -10.66 16 24 C -0.05 -1.20 10.73 83.18 0.89 -0.31 16 25 C -0.20 -4.46 10.86 22.15 0.24 -4.22 16 26 C -0.20 -3.82 10.86 22.15 0.24 -3.58 16 27 C -0.02 -0.30 10.73 83.18 0.89 0.59 16 28 C -0.11 -3.21 9.00 22.65 0.20 -3.00 16 29 C 0.18 9.01 4.89 86.36 0.42 9.44 16 30 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 31 H 0.05 2.18 7.93 -2.38 -0.02 2.16 16 32 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.05 1.64 8.14 -2.38 -0.02 1.63 16 34 H 0.10 2.25 8.14 -2.39 -0.02 2.24 16 35 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 36 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.41 9.16 6.63 -92.71 -0.61 8.55 16 38 H 0.16 1.83 6.40 -2.91 -0.02 1.82 16 39 H 0.19 0.59 8.06 -2.91 -0.02 0.56 16 40 H 0.17 1.31 6.69 -2.91 -0.02 1.29 16 41 H 0.16 4.16 7.01 -2.91 -0.02 4.14 16 42 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 43 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 44 H 0.20 1.91 7.00 -2.91 -0.02 1.89 16 45 H 0.11 3.94 6.29 -2.91 -0.02 3.92 16 46 H 0.04 2.49 6.04 -2.39 -0.01 2.48 16 47 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 Total: -1.00 -84.78 381.24 3.82 -80.95 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.38 Total: 21.11 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: 6.60 Total: 3.70 kcal Atomic # 7 Polarization: -122.32 SS G_CDS: -5.12 Total: -127.44 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.06 Total: -28.88 kcal Atomic # 14 Polarization: 48.53 SS G_CDS: 2.03 Total: 50.56 kcal Total: -84.78 3.82 -80.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007820607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.542 kcal (2) G-P(sol) polarization free energy of solvation -84.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds