Wall clock time and date at job start Tue Mar 31 2020 22:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00452 * 2 1 4 4 H 1.48497 * 109.47348 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47160 * 300.00131 * 3 2 1 6 6 H 1.48501 * 109.47059 * 60.00013 * 3 2 1 7 7 C 1.38813 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00283 * 197.36797 * 7 2 1 9 9 N 1.36938 * 120.00021 * 17.37260 * 7 2 1 10 10 C 1.46928 * 120.62984 * 27.67063 * 9 7 2 11 11 C 1.53197 * 108.77349 * 126.39336 * 10 9 7 12 12 C 1.53038 * 109.31126 * 54.63432 * 11 10 9 13 13 C 1.53042 * 109.54089 * 298.63540 * 12 11 10 14 14 H 1.08993 * 109.49468 * 301.38061 * 13 12 11 15 15 N 1.46497 * 109.49727 * 181.31393 * 13 12 11 16 16 C 1.34777 * 120.00002 * 155.33854 * 15 13 12 17 17 O 1.21720 * 119.99948 * 359.73073 * 16 15 13 18 18 C 1.46580 * 120.00230 * 179.72653 * 16 15 13 19 19 C 1.38053 * 126.00714 * 180.02562 * 18 16 15 20 20 C 1.39362 * 107.44290 * 180.02562 * 19 18 16 21 21 C 1.37825 * 107.65456 * 359.97438 * 20 19 18 22 22 C 1.47804 * 125.82608 * 179.97438 * 21 20 19 23 23 C 1.39591 * 120.14672 * 179.75070 * 22 21 20 24 24 C 1.37955 * 119.85185 * 179.76434 * 23 22 21 25 25 C 1.38364 * 120.14519 * 0.51195 * 24 23 22 26 26 C 1.38362 * 120.29794 * 359.73681 * 25 24 23 27 27 C 1.37958 * 120.14627 * 0.02562 * 26 25 24 28 28 N 1.36404 * 108.35054 * 359.73714 * 21 20 19 29 29 H 0.96996 * 125.72307 * 180.29661 * 28 21 20 30 30 C 1.46932 * 120.60449 * 207.65508 * 9 7 2 31 31 H 0.97005 * 119.99429 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.58171 * 6.61294 * 10 9 7 33 33 H 1.08996 * 109.70863 * 246.24915 * 10 9 7 34 34 H 1.09003 * 109.49421 * 294.68669 * 11 10 9 35 35 H 1.08992 * 109.52600 * 174.60706 * 11 10 9 36 36 H 1.08997 * 109.45884 * 178.61513 * 12 11 10 37 37 H 1.09006 * 109.45842 * 58.65885 * 12 11 10 38 38 H 0.97000 * 120.00395 * 335.06748 * 15 13 12 39 39 H 1.08005 * 126.28200 * 0.03783 * 19 18 16 40 40 H 1.08002 * 126.17390 * 180.02562 * 20 19 18 41 41 H 1.07997 * 120.07758 * 359.97438 * 23 22 21 42 42 H 1.07996 * 119.93142 * 180.24796 * 24 23 22 43 43 H 1.08004 * 119.85194 * 179.76536 * 25 24 23 44 44 H 1.07998 * 119.92838 * 180.02562 * 26 25 24 45 45 H 1.07994 * 120.07551 * 179.97438 * 27 26 25 46 46 H 1.09000 * 109.55985 * 113.80294 * 30 9 7 47 47 H 1.09000 * 109.61645 * 353.37579 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8916 2.3965 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0533 -1.2235 0.2797 9 7 1.3723 -2.3612 -0.3530 10 6 0.2279 -2.3348 -1.2741 11 6 0.5011 -3.3049 -2.4279 12 6 0.8191 -4.6900 -1.8599 13 6 2.0746 -4.6100 -0.9885 14 1 2.9086 -4.2405 -1.5851 15 7 2.3961 -5.9422 -0.4707 16 6 3.6618 -6.2399 -0.1159 17 8 4.5387 -5.4035 -0.2303 18 6 3.9824 -7.5709 0.4078 19 6 5.2299 -8.0070 0.8073 20 6 5.0939 -9.3263 1.2352 21 6 3.7688 -9.6776 1.0924 22 6 3.1812 -10.9916 1.4279 23 6 1.8166 -11.2179 1.2398 24 6 1.2754 -12.4483 1.5505 25 6 2.0800 -13.4534 2.0573 26 6 3.4323 -13.2341 2.2511 27 6 3.9872 -12.0099 1.9400 28 7 3.0913 -8.6040 0.5935 29 1 2.1413 -8.5740 0.3998 30 6 1.8200 -3.6545 0.1815 31 1 -0.4849 0.8401 -0.0004 32 1 0.0986 -1.3265 -1.6674 33 1 -0.6758 -2.6399 -0.7465 34 1 1.3498 -2.9471 -3.0107 35 1 -0.3791 -3.3673 -3.0676 36 1 0.9898 -5.3881 -2.6794 37 1 -0.0202 -5.0366 -1.2568 38 1 1.6974 -6.6088 -0.3795 39 1 6.1436 -7.4313 0.7914 40 1 5.8841 -9.9590 1.6117 41 1 1.1866 -10.4327 0.8489 42 1 0.2206 -12.6260 1.4017 43 1 1.6506 -14.4136 2.3025 44 1 4.0549 -14.0229 2.6467 45 1 5.0428 -11.8398 2.0920 46 1 1.0478 -4.0684 0.8300 47 1 2.7409 -3.5172 0.7482 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009720751.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:15 Heat of formation + Delta-G solvation = 48.776683 kcal Electronic energy + Delta-G solvation = -28138.825784 eV Core-core repulsion = 24287.173128 eV Total energy + Delta-G solvation = -3851.652656 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.51982 -39.51456 -38.87965 -37.25882 -34.40873 -32.62520 -32.27904 -31.79257 -30.88998 -30.48524 -29.24932 -27.76897 -25.30112 -24.02023 -23.12461 -22.38203 -22.10744 -21.21547 -20.46716 -19.98994 -19.58334 -18.58146 -17.10060 -16.78846 -16.05759 -15.62659 -15.24077 -15.18486 -14.83388 -14.60796 -14.29303 -14.18911 -13.89761 -13.78280 -13.65450 -13.41665 -13.18246 -12.93236 -12.84359 -12.68475 -12.42752 -12.37193 -11.85289 -11.69949 -11.41626 -11.12232 -10.92797 -10.79877 -10.28924 -10.23071 -10.10405 -9.91738 -9.81251 -9.66951 -9.62662 -9.38674 -9.23145 -8.91427 -8.42320 -7.87766 -6.68599 -5.78579 -3.20558 0.46148 0.98003 1.62310 2.57924 2.73247 3.24792 3.39692 3.46887 3.47700 3.52207 3.52486 4.25238 4.41502 4.52136 4.52931 4.70296 4.82759 4.98114 5.05216 5.11753 5.18892 5.27100 5.36130 5.45568 5.50254 5.58075 5.59447 5.66240 5.77691 5.89697 6.03116 6.03896 6.08431 6.09439 6.11176 6.19330 6.46658 6.51798 6.54487 6.57933 6.60616 6.65557 6.71242 6.81183 6.94922 7.08546 7.33633 7.63123 7.64453 7.84121 8.31664 8.45956 9.22013 9.84096 10.39373 11.30256 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020618 B = 0.002135 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.690367 B =13111.095135 C =13763.768570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.249 4.249 8 H 0.068 0.932 9 N -0.587 5.587 10 C 0.167 3.833 11 C -0.139 4.139 12 C -0.115 4.115 13 C 0.127 3.873 14 H 0.089 0.911 15 N -0.722 5.722 16 C 0.582 3.418 17 O -0.520 6.520 18 C -0.031 4.031 19 C -0.109 4.109 20 C -0.182 4.182 21 C 0.074 3.926 22 C -0.016 4.016 23 C -0.122 4.122 24 C -0.112 4.112 25 C -0.123 4.123 26 C -0.113 4.113 27 C -0.100 4.100 28 N -0.531 5.531 29 H 0.415 0.585 30 C 0.142 3.858 31 H 0.253 0.747 32 H 0.090 0.910 33 H 0.019 0.981 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.058 0.942 38 H 0.387 0.613 39 H 0.152 0.848 40 H 0.146 0.854 41 H 0.117 0.883 42 H 0.125 0.875 43 H 0.123 0.877 44 H 0.126 0.874 45 H 0.130 0.870 46 H 0.016 0.984 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.697 -27.868 1.122 28.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.379 4.379 8 H 0.086 0.914 9 N -0.310 5.310 10 C 0.041 3.959 11 C -0.179 4.179 12 C -0.153 4.153 13 C 0.022 3.978 14 H 0.107 0.893 15 N -0.372 5.372 16 C 0.368 3.632 17 O -0.395 6.395 18 C -0.145 4.145 19 C -0.135 4.135 20 C -0.206 4.206 21 C -0.042 4.042 22 C -0.017 4.017 23 C -0.141 4.141 24 C -0.130 4.130 25 C -0.141 4.141 26 C -0.131 4.131 27 C -0.119 4.119 28 N -0.127 5.127 29 H 0.252 0.748 30 C 0.014 3.986 31 H 0.063 0.937 32 H 0.108 0.892 33 H 0.037 0.963 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.219 0.781 39 H 0.170 0.830 40 H 0.164 0.836 41 H 0.135 0.865 42 H 0.143 0.857 43 H 0.141 0.859 44 H 0.144 0.856 45 H 0.148 0.852 46 H 0.034 0.966 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.076 -26.983 0.987 27.176 hybrid contribution -0.596 0.471 -0.006 0.760 sum 2.480 -26.513 0.981 26.646 Atomic orbital electron populations 1.70050 1.05256 1.25389 1.54203 1.25030 0.95316 0.98445 1.00928 0.86207 0.79566 0.83756 0.77224 1.20099 1.21534 1.21734 1.19279 0.92883 0.84613 1.41100 0.91422 1.44011 1.35585 1.01034 1.50366 1.20846 0.88558 0.98639 0.87859 1.22182 1.00518 0.95060 1.00161 1.21683 0.96628 0.98765 0.98215 1.21804 0.97985 0.80776 0.97271 0.89262 1.46068 1.08738 1.16106 1.66327 1.17034 0.83026 0.85142 0.77959 1.90894 1.46871 1.47819 1.53910 1.20692 0.90875 0.89652 1.13316 1.21240 0.96177 0.95116 1.00966 1.21082 0.94378 0.96653 1.08498 1.19077 0.92012 0.87630 1.05505 1.18104 0.93128 0.90794 0.99629 1.21119 0.93993 0.97721 1.01230 1.21053 1.00050 0.93034 0.98837 1.21255 0.94030 0.99281 0.99521 1.21111 0.95305 0.96969 0.99725 1.21137 0.99977 0.92361 0.98452 1.42026 1.10176 1.10470 1.50052 0.74769 1.21188 0.98009 0.86851 0.92528 0.93720 0.89173 0.96325 0.92312 0.92666 0.93103 0.92341 0.78088 0.83037 0.83629 0.86538 0.85723 0.85892 0.85555 0.85193 0.96591 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.38 11.19 55.49 0.62 -25.76 16 2 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 3 Si 0.90 22.19 29.59 -169.99 -5.03 17.16 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.25 -7.05 9.58 -15.06 -0.14 -7.19 16 8 H 0.07 1.93 7.89 -52.48 -0.41 1.52 16 9 N -0.59 -14.98 3.00 -172.31 -0.52 -15.50 16 10 C 0.17 3.93 5.31 -3.71 -0.02 3.91 16 11 C -0.14 -2.58 6.08 -26.61 -0.16 -2.74 16 12 C -0.11 -1.82 5.35 -26.69 -0.14 -1.96 16 13 C 0.13 2.26 2.60 -67.81 -0.18 2.09 16 14 H 0.09 1.83 7.58 -51.93 -0.39 1.44 16 15 N -0.72 -10.40 5.08 -55.03 -0.28 -10.68 16 16 C 0.58 9.34 7.75 -12.90 -0.10 9.24 16 17 O -0.52 -10.56 16.54 5.17 0.09 -10.47 16 18 C -0.03 -0.41 7.04 -81.94 -0.58 -0.98 16 19 C -0.11 -1.36 10.60 -39.23 -0.42 -1.78 16 20 C -0.18 -1.87 10.22 -39.31 -0.40 -2.28 16 21 C 0.07 0.74 6.93 -82.07 -0.57 0.17 16 22 C -0.02 -0.14 5.87 -104.97 -0.62 -0.75 16 23 C -0.12 -0.93 9.70 -39.18 -0.38 -1.31 16 24 C -0.11 -0.74 10.03 -39.64 -0.40 -1.14 16 25 C -0.12 -0.76 10.04 -39.49 -0.40 -1.16 16 26 C -0.11 -0.71 10.03 -39.64 -0.40 -1.11 16 27 C -0.10 -0.74 9.57 -39.18 -0.37 -1.12 16 28 N -0.53 -5.31 5.90 -5.81 -0.03 -5.34 16 29 H 0.41 3.05 7.24 -40.82 -0.30 2.75 16 30 C 0.14 3.11 6.09 -3.71 -0.02 3.09 16 31 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.09 2.39 6.04 -51.93 -0.31 2.07 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.39 4.18 7.71 -40.82 -0.31 3.86 16 39 H 0.15 1.85 8.06 -52.48 -0.42 1.42 16 40 H 0.15 1.13 7.26 -52.49 -0.38 0.75 16 41 H 0.12 0.70 7.14 -52.49 -0.37 0.33 16 42 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 43 H 0.12 0.51 8.06 -52.48 -0.42 0.09 16 44 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 45 H 0.13 0.76 6.98 -52.49 -0.37 0.40 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.06 1.41 7.93 -51.93 -0.41 1.00 16 LS Contribution 385.47 15.07 5.81 5.81 Total: -1.00 -33.72 385.47 -11.35 -45.08 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -6.63 Total: 4.79 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -5.38 Total: -5.09 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: -0.21 Total: -57.27 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.72 -11.35 -45.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009720751.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.852 kcal (2) G-P(sol) polarization free energy of solvation -33.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds