Wall clock time and date at job start Tue Mar 31 2020 22:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00452 * 2 1 4 4 H 1.48497 * 109.47348 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47160 * 300.00131 * 3 2 1 6 6 H 1.48501 * 109.47059 * 60.00013 * 3 2 1 7 7 C 1.38813 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00283 * 197.36797 * 7 2 1 9 9 N 1.36938 * 120.00021 * 17.37260 * 7 2 1 10 10 C 1.46928 * 120.62984 * 27.67063 * 9 7 2 11 11 C 1.53197 * 108.77349 * 126.39336 * 10 9 7 12 12 C 1.53038 * 109.31126 * 54.63432 * 11 10 9 13 13 C 1.53042 * 109.54089 * 298.63540 * 12 11 10 14 14 H 1.08993 * 109.49468 * 301.38061 * 13 12 11 15 15 N 1.46497 * 109.49727 * 181.31393 * 13 12 11 16 16 C 1.34777 * 120.00002 * 155.33854 * 15 13 12 17 17 O 1.21720 * 119.99948 * 359.73073 * 16 15 13 18 18 C 1.46580 * 120.00230 * 179.72653 * 16 15 13 19 19 C 1.38053 * 126.00714 * 180.02562 * 18 16 15 20 20 C 1.39362 * 107.44290 * 180.02562 * 19 18 16 21 21 C 1.37825 * 107.65456 * 359.97438 * 20 19 18 22 22 C 1.47804 * 125.82608 * 179.97438 * 21 20 19 23 23 C 1.39591 * 120.14672 * 179.75070 * 22 21 20 24 24 C 1.37955 * 119.85185 * 179.76434 * 23 22 21 25 25 C 1.38364 * 120.14519 * 0.51195 * 24 23 22 26 26 C 1.38362 * 120.29794 * 359.73681 * 25 24 23 27 27 C 1.37958 * 120.14627 * 0.02562 * 26 25 24 28 28 N 1.36404 * 108.35054 * 359.73714 * 21 20 19 29 29 H 0.96996 * 125.72307 * 180.29661 * 28 21 20 30 30 C 1.46932 * 120.60449 * 207.65508 * 9 7 2 31 31 H 0.97005 * 119.99429 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.58171 * 6.61294 * 10 9 7 33 33 H 1.08996 * 109.70863 * 246.24915 * 10 9 7 34 34 H 1.09003 * 109.49421 * 294.68669 * 11 10 9 35 35 H 1.08992 * 109.52600 * 174.60706 * 11 10 9 36 36 H 1.08997 * 109.45884 * 178.61513 * 12 11 10 37 37 H 1.09006 * 109.45842 * 58.65885 * 12 11 10 38 38 H 0.97000 * 120.00395 * 335.06748 * 15 13 12 39 39 H 1.08005 * 126.28200 * 0.03783 * 19 18 16 40 40 H 1.08002 * 126.17390 * 180.02562 * 20 19 18 41 41 H 1.07997 * 120.07758 * 359.97438 * 23 22 21 42 42 H 1.07996 * 119.93142 * 180.24796 * 24 23 22 43 43 H 1.08004 * 119.85194 * 179.76536 * 25 24 23 44 44 H 1.07998 * 119.92838 * 180.02562 * 26 25 24 45 45 H 1.07994 * 120.07551 * 179.97438 * 27 26 25 46 46 H 1.09000 * 109.55985 * 113.80294 * 30 9 7 47 47 H 1.09000 * 109.61645 * 353.37579 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8916 2.3965 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0533 -1.2235 0.2797 9 7 1.3723 -2.3612 -0.3530 10 6 0.2279 -2.3348 -1.2741 11 6 0.5011 -3.3049 -2.4279 12 6 0.8191 -4.6900 -1.8599 13 6 2.0746 -4.6100 -0.9885 14 1 2.9086 -4.2405 -1.5851 15 7 2.3961 -5.9422 -0.4707 16 6 3.6618 -6.2399 -0.1159 17 8 4.5387 -5.4035 -0.2303 18 6 3.9824 -7.5709 0.4078 19 6 5.2299 -8.0070 0.8073 20 6 5.0939 -9.3263 1.2352 21 6 3.7688 -9.6776 1.0924 22 6 3.1812 -10.9916 1.4279 23 6 1.8166 -11.2179 1.2398 24 6 1.2754 -12.4483 1.5505 25 6 2.0800 -13.4534 2.0573 26 6 3.4323 -13.2341 2.2511 27 6 3.9872 -12.0099 1.9400 28 7 3.0913 -8.6040 0.5935 29 1 2.1413 -8.5740 0.3998 30 6 1.8200 -3.6545 0.1815 31 1 -0.4849 0.8401 -0.0004 32 1 0.0986 -1.3265 -1.6674 33 1 -0.6758 -2.6399 -0.7465 34 1 1.3498 -2.9471 -3.0107 35 1 -0.3791 -3.3673 -3.0676 36 1 0.9898 -5.3881 -2.6794 37 1 -0.0202 -5.0366 -1.2568 38 1 1.6974 -6.6088 -0.3795 39 1 6.1436 -7.4313 0.7914 40 1 5.8841 -9.9590 1.6117 41 1 1.1866 -10.4327 0.8489 42 1 0.2206 -12.6260 1.4017 43 1 1.6506 -14.4136 2.3025 44 1 4.0549 -14.0229 2.6467 45 1 5.0428 -11.8398 2.0920 46 1 1.0478 -4.0684 0.8300 47 1 2.7409 -3.5172 0.7482 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009720751.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:14 Heat of formation + Delta-G solvation = 28.308310 kcal Electronic energy + Delta-G solvation = -28139.713359 eV Core-core repulsion = 24287.173128 eV Total energy + Delta-G solvation = -3852.540231 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.40866 -40.68368 -39.59707 -38.84690 -36.04211 -34.26566 -33.00376 -32.53955 -32.37919 -31.55309 -30.64776 -28.79665 -27.29409 -25.01202 -23.92824 -23.74294 -23.43891 -22.26401 -21.43885 -21.31944 -20.69071 -19.68560 -18.75393 -17.82027 -17.22419 -16.79287 -16.56279 -16.40863 -15.84737 -15.76951 -15.47072 -15.44345 -15.08958 -15.03608 -14.69209 -14.57277 -14.28612 -14.24404 -14.06546 -13.68409 -13.55890 -13.49963 -13.36535 -13.06191 -12.79189 -12.60460 -12.20690 -12.14797 -11.99660 -11.89153 -11.82232 -11.64958 -11.36066 -11.17076 -10.66258 -10.46859 -10.23268 -10.08479 -9.86969 -8.75394 -8.65219 -7.93533 -5.38823 -0.21713 0.49708 0.71206 1.42003 1.43737 1.55615 1.80030 1.86960 2.05078 2.31329 2.48600 2.98573 3.20661 3.58586 3.65132 3.76463 3.88212 3.95460 4.05802 4.07329 4.19636 4.24699 4.30309 4.39420 4.43486 4.51685 4.56940 4.60836 4.76523 4.85924 4.88184 4.96515 5.03957 5.07374 5.08497 5.13297 5.15171 5.22122 5.36905 5.42452 5.51404 5.53497 5.60418 5.62491 5.73439 5.76769 5.81910 6.05013 6.30864 6.34031 6.51010 7.08941 7.12289 7.78989 8.28671 9.12333 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020618 B = 0.002135 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.690367 B =13111.095135 C =13763.768570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.045 4.045 3 Si 0.966 3.034 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.288 1.288 7 C -0.267 4.267 8 H 0.053 0.947 9 N -0.607 5.607 10 C 0.170 3.830 11 C -0.130 4.130 12 C -0.104 4.104 13 C 0.143 3.857 14 H 0.060 0.940 15 N -0.707 5.707 16 C 0.583 3.417 17 O -0.573 6.573 18 C -0.059 4.059 19 C -0.117 4.117 20 C -0.192 4.192 21 C 0.094 3.906 22 C -0.042 4.042 23 C -0.129 4.129 24 C -0.122 4.122 25 C -0.122 4.122 26 C -0.120 4.120 27 C -0.105 4.105 28 N -0.519 5.519 29 H 0.427 0.573 30 C 0.144 3.856 31 H 0.253 0.747 32 H 0.056 0.944 33 H 0.006 0.994 34 H 0.048 0.952 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.408 0.592 39 H 0.145 0.855 40 H 0.170 0.830 41 H 0.128 0.872 42 H 0.143 0.857 43 H 0.145 0.855 44 H 0.149 0.851 45 H 0.142 0.858 46 H 0.021 0.979 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.819 -31.242 0.910 31.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.241 4.241 3 Si 0.793 3.207 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.214 1.214 7 C -0.397 4.397 8 H 0.070 0.930 9 N -0.331 5.331 10 C 0.045 3.955 11 C -0.169 4.169 12 C -0.142 4.142 13 C 0.037 3.963 14 H 0.079 0.921 15 N -0.358 5.358 16 C 0.372 3.628 17 O -0.453 6.453 18 C -0.173 4.173 19 C -0.144 4.144 20 C -0.215 4.215 21 C -0.024 4.024 22 C -0.043 4.043 23 C -0.148 4.148 24 C -0.140 4.140 25 C -0.140 4.140 26 C -0.137 4.137 27 C -0.124 4.124 28 N -0.116 5.116 29 H 0.267 0.733 30 C 0.017 3.983 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.024 0.976 34 H 0.067 0.933 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.245 0.755 39 H 0.162 0.838 40 H 0.187 0.813 41 H 0.146 0.854 42 H 0.161 0.839 43 H 0.163 0.837 44 H 0.166 0.834 45 H 0.159 0.841 46 H 0.039 0.961 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 2.153 -30.409 0.765 30.495 hybrid contribution -0.347 1.314 0.171 1.370 sum 1.806 -29.095 0.937 29.166 Atomic orbital electron populations 1.70171 1.06341 1.25975 1.54937 1.25729 0.96168 1.01236 1.00934 0.85240 0.78343 0.79841 0.77232 1.19917 1.20881 1.21437 1.19423 0.92595 0.86328 1.41379 0.92954 1.44234 1.36033 1.01447 1.51342 1.20739 0.87492 0.98300 0.88954 1.22018 1.01501 0.95119 0.98270 1.21619 0.95670 0.97863 0.99039 1.21309 0.98256 0.81380 0.95390 0.92128 1.45758 1.09097 1.15202 1.65705 1.17409 0.82672 0.85777 0.76988 1.90861 1.48401 1.49743 1.56263 1.20152 0.91860 0.89209 1.16046 1.21405 0.95926 0.96211 1.00854 1.21350 0.95420 0.95936 1.08813 1.19422 0.91924 0.87879 1.03133 1.18183 0.93953 0.90375 1.01755 1.21364 0.93798 0.98626 1.00986 1.21355 1.01190 0.92768 0.98663 1.21639 0.94079 1.00087 0.98152 1.21432 0.95815 0.97122 0.99374 1.21396 1.00643 0.92507 0.97872 1.41910 1.10530 1.09635 1.49545 0.73320 1.21212 0.96427 0.86597 0.94023 0.93816 0.92600 0.97579 0.93338 0.89511 0.89395 0.90445 0.75541 0.83761 0.81263 0.85393 0.83922 0.83719 0.83366 0.84053 0.96145 0.95236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.56 11.19 21.65 0.24 -55.32 16 2 C -0.04 -2.60 4.91 84.86 0.42 -2.18 16 3 Si 0.97 46.82 29.59 68.60 2.03 48.85 16 4 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 5 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 6 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 7 C -0.27 -15.74 9.58 84.03 0.81 -14.93 16 8 H 0.05 3.17 7.89 -2.91 -0.02 3.14 16 9 N -0.61 -32.05 3.00 -699.06 -2.09 -34.15 16 10 C 0.17 8.16 5.31 86.36 0.46 8.62 16 11 C -0.13 -4.62 6.08 30.67 0.19 -4.43 16 12 C -0.10 -3.04 5.35 30.62 0.16 -2.88 16 13 C 0.14 5.11 2.60 45.07 0.12 5.22 16 14 H 0.06 2.56 7.58 -2.39 -0.02 2.54 16 15 N -0.71 -19.93 5.08 -446.21 -2.27 -22.20 16 16 C 0.58 19.14 7.75 86.42 0.67 19.81 16 17 O -0.57 -24.63 16.54 -4.41 -0.07 -24.71 16 18 C -0.06 -1.54 7.04 40.36 0.28 -1.26 16 19 C -0.12 -2.96 10.60 22.50 0.24 -2.72 16 20 C -0.19 -3.72 10.22 22.44 0.23 -3.49 16 21 C 0.09 1.72 6.93 40.87 0.28 2.00 16 22 C -0.04 -0.63 5.87 -20.09 -0.12 -0.74 16 23 C -0.13 -1.64 9.70 22.53 0.22 -1.42 16 24 C -0.12 -1.26 10.03 22.23 0.22 -1.03 16 25 C -0.12 -1.10 10.04 22.33 0.22 -0.88 16 26 C -0.12 -1.14 10.03 22.23 0.22 -0.92 16 27 C -0.11 -1.29 9.57 22.53 0.22 -1.08 16 28 N -0.52 -9.63 5.90 -172.31 -1.02 -10.65 16 29 H 0.43 5.37 7.24 -92.71 -0.67 4.70 16 30 C 0.14 6.54 6.09 86.36 0.53 7.07 16 31 H 0.25 14.48 8.31 -92.70 -0.77 13.71 16 32 H 0.06 3.05 6.04 -2.39 -0.01 3.03 16 33 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 38 H 0.41 7.97 7.71 -92.71 -0.71 7.26 16 39 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 40 H 0.17 2.31 7.26 -2.91 -0.02 2.29 16 41 H 0.13 1.20 7.14 -2.91 -0.02 1.18 16 42 H 0.14 0.88 8.06 -2.91 -0.02 0.86 16 43 H 0.15 0.64 8.06 -2.91 -0.02 0.62 16 44 H 0.15 0.70 8.06 -2.91 -0.02 0.67 16 45 H 0.14 1.30 6.98 -2.91 -0.02 1.28 16 46 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.03 1.47 7.93 -2.39 -0.02 1.46 16 Total: -1.00 -77.28 385.47 1.81 -75.48 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -0.38 Total: 17.93 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 5.37 Total: 4.76 kcal Atomic # 7 Polarization: -117.18 SS G_CDS: -5.13 Total: -122.32 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.07 Total: -24.71 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -77.28 1.81 -75.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009720751.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.787 kcal (2) G-P(sol) polarization free energy of solvation -77.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds