Wall clock time and date at job start Tue Mar 31 2020 22:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86809 * 119.99640 * 2 1 4 4 H 1.48496 * 109.47063 * 269.99750 * 3 2 1 5 5 H 1.48497 * 109.47003 * 30.00108 * 3 2 1 6 6 H 1.48497 * 109.46748 * 149.99890 * 3 2 1 7 7 C 1.38808 * 120.00423 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00267 * 197.85465 * 7 2 1 9 9 N 1.36938 * 120.00064 * 17.85417 * 7 2 1 10 10 C 1.46848 * 120.38377 * 208.91386 * 9 7 2 11 11 C 1.53350 * 108.80789 * 236.87899 * 10 9 7 12 12 C 1.53180 * 108.77217 * 308.68163 * 11 10 9 13 13 C 1.52850 * 117.65740 * 269.98090 * 12 11 10 14 14 C 1.52812 * 117.71901 * 201.11970 * 12 11 10 15 15 H 1.09000 * 117.50452 * 215.12340 * 14 12 11 16 16 N 1.46502 * 117.49963 * 0.13668 * 14 12 11 17 17 C 1.34773 * 120.00024 * 205.00088 * 16 14 12 18 18 O 1.21782 * 119.99857 * 359.97438 * 17 16 14 19 19 C 1.46213 * 120.00319 * 180.02562 * 17 16 14 20 20 C 1.41742 * 126.79263 * 0.02562 * 19 17 16 21 21 C 1.34519 * 107.76969 * 179.97438 * 20 19 17 22 22 N 1.36950 * 109.60614 * 359.97438 * 21 20 19 23 23 C 1.36706 * 131.35152 * 180.02562 * 22 21 20 24 24 C 1.34998 * 120.75654 * 179.97438 * 23 22 21 25 25 C 1.40309 * 120.37995 * 0.02562 * 24 23 22 26 26 C 1.36331 * 119.45679 * 0.02562 * 25 24 23 27 27 C 1.36944 * 108.74093 * 359.97438 * 22 21 20 28 28 C 1.53185 * 115.07487 * 55.44264 * 12 11 10 29 29 C 1.46839 * 120.38132 * 28.88251 * 9 7 2 30 30 H 0.96999 * 120.00077 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.58576 * 117.07742 * 10 9 7 32 32 H 1.09002 * 109.57846 * 356.67443 * 10 9 7 33 33 H 1.09002 * 109.58882 * 188.89568 * 11 10 9 34 34 H 1.09004 * 109.58860 * 68.46652 * 11 10 9 35 35 H 1.09001 * 117.50748 * 144.80965 * 13 12 11 36 36 H 1.08998 * 117.50358 * 359.75056 * 13 12 11 37 37 H 0.97005 * 119.99973 * 25.00081 * 16 14 12 38 38 H 1.07994 * 126.11689 * 359.97438 * 20 19 17 39 39 H 1.08001 * 125.19493 * 179.97438 * 21 20 19 40 40 H 1.08008 * 119.61767 * 359.97438 * 23 22 21 41 41 H 1.08005 * 119.80932 * 180.28202 * 24 23 22 42 42 H 1.07996 * 120.26746 * 180.02562 * 25 24 23 43 43 H 1.08000 * 120.33778 * 179.97438 * 26 25 24 44 44 H 1.09000 * 109.58324 * 64.35330 * 28 12 11 45 45 H 1.08999 * 109.58877 * 184.77152 * 28 12 11 46 46 H 1.09008 * 109.57995 * 242.92310 * 29 9 7 47 47 H 1.09002 * 109.58123 * 3.32540 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0513 -1.2247 0.2862 9 7 1.3752 -2.3593 -0.3647 10 6 1.8053 -3.6490 0.1905 11 6 2.1668 -4.5891 -0.9657 12 6 1.0061 -4.6104 -1.9651 13 6 -0.0882 -5.6575 -1.7593 14 6 0.9062 -5.8048 -2.9131 15 1 0.5386 -5.6173 -3.9220 16 7 1.9279 -6.8482 -2.7966 17 6 2.2162 -7.6303 -3.8556 18 8 1.6270 -7.4700 -4.9093 19 6 3.2355 -8.6721 -3.7393 20 6 4.0035 -8.9837 -2.5894 21 6 4.8216 -10.0035 -2.9061 22 7 4.6181 -10.3679 -4.2104 23 6 5.2003 -11.3371 -4.9788 24 6 4.8295 -11.5143 -6.2647 25 6 3.8370 -10.7029 -6.8352 26 6 3.2490 -9.7319 -6.0802 27 6 3.6464 -9.5646 -4.7452 28 6 0.5856 -3.2384 -2.5010 29 6 0.2557 -2.3249 -1.3142 30 1 -0.4850 0.8400 0.0004 31 1 0.9946 -4.0838 0.7751 32 1 2.6778 -3.5000 0.8267 33 1 2.3355 -5.5946 -0.5801 34 1 3.0688 -4.2293 -1.4609 35 1 -1.1104 -5.3731 -2.0089 36 1 0.0179 -6.3369 -0.9136 37 1 2.3970 -6.9762 -1.9572 38 1 3.9428 -8.4906 -1.6305 39 1 5.5306 -10.4644 -2.2343 40 1 5.9659 -11.9683 -4.5521 41 1 5.2964 -12.2877 -6.8565 42 1 3.5414 -10.8465 -7.8639 43 1 2.4839 -9.0990 -6.5050 44 1 1.4023 -2.8059 -3.0790 45 1 -0.2950 -3.3475 -3.1341 46 1 -0.6511 -2.6777 -0.8228 47 1 0.1083 -1.3046 -1.6684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016725022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:57 Heat of formation + Delta-G solvation = 88.467753 kcal Electronic energy + Delta-G solvation = -28520.159750 eV Core-core repulsion = 24670.228229 eV Total energy + Delta-G solvation = -3849.931522 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.56307 -39.65741 -38.15602 -36.86937 -35.38508 -33.31996 -32.89528 -31.53931 -30.29628 -29.91477 -28.50433 -27.97144 -24.32169 -24.13609 -23.79311 -22.40111 -21.76197 -21.55985 -20.62974 -19.96322 -18.26794 -18.04999 -16.95940 -16.50376 -16.18535 -15.98228 -15.82938 -15.65030 -14.80188 -14.65964 -14.39248 -14.22069 -14.00886 -13.48175 -13.43338 -13.21775 -13.02862 -13.01933 -12.59527 -12.19863 -12.14706 -11.95129 -11.70430 -11.56148 -11.52583 -11.25680 -10.91505 -10.71290 -10.62436 -10.37954 -10.25601 -9.92144 -9.84434 -9.60976 -9.55750 -9.26575 -9.01853 -8.41130 -8.34471 -7.64615 -6.59939 -5.75070 -3.18271 0.41275 0.90646 2.11719 2.28588 3.02300 3.36245 3.40569 3.47587 3.48391 3.59830 4.11365 4.32743 4.42265 4.46865 4.52983 4.58919 4.75988 4.89248 5.09024 5.10741 5.23525 5.26236 5.36451 5.43053 5.45452 5.49374 5.57237 5.70155 5.82055 5.91985 5.99604 6.01303 6.14261 6.15468 6.22698 6.35573 6.38094 6.51165 6.53913 6.66602 6.71929 6.74505 6.77050 6.87277 6.92170 7.02226 7.42381 7.72176 7.72866 7.83340 8.44601 8.50488 9.25757 9.89496 10.46243 11.32521 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023308 B = 0.002155 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.016581 B =12987.051392 C =13287.079855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.064 0.936 9 N -0.590 5.590 10 C 0.150 3.850 11 C -0.096 4.096 12 C -0.098 4.098 13 C -0.184 4.184 14 C 0.074 3.926 15 H 0.132 0.868 16 N -0.691 5.691 17 C 0.594 3.406 18 O -0.557 6.557 19 C -0.237 4.237 20 C -0.105 4.105 21 C -0.064 4.064 22 N -0.339 5.339 23 C 0.046 3.954 24 C -0.142 4.142 25 C -0.120 4.120 26 C -0.078 4.078 27 C 0.112 3.888 28 C -0.105 4.105 29 C 0.173 3.827 30 H 0.253 0.747 31 H 0.019 0.981 32 H 0.053 0.947 33 H 0.045 0.955 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.399 0.601 38 H 0.154 0.846 39 H 0.174 0.826 40 H 0.163 0.837 41 H 0.148 0.852 42 H 0.138 0.862 43 H 0.157 0.843 44 H 0.060 0.940 45 H 0.051 0.949 46 H 0.018 0.982 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.198 -25.225 -9.255 28.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.382 4.382 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.023 3.977 11 C -0.136 4.136 12 C -0.099 4.099 13 C -0.222 4.222 14 C -0.032 4.032 15 H 0.149 0.851 16 N -0.340 5.340 17 C 0.384 3.616 18 O -0.437 6.437 19 C -0.247 4.247 20 C -0.127 4.127 21 C -0.189 4.189 22 N -0.003 5.003 23 C -0.075 4.075 24 C -0.162 4.162 25 C -0.141 4.141 26 C -0.097 4.097 27 C 0.002 3.998 28 C -0.145 4.145 29 C 0.047 3.953 30 H 0.063 0.937 31 H 0.037 0.963 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.234 0.766 38 H 0.171 0.829 39 H 0.191 0.809 40 H 0.181 0.819 41 H 0.165 0.835 42 H 0.156 0.844 43 H 0.174 0.826 44 H 0.078 0.922 45 H 0.070 0.930 46 H 0.036 0.964 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.853 -25.141 -9.958 28.454 hybrid contribution 0.712 0.648 0.543 1.105 sum 9.564 -24.494 -9.415 27.929 Atomic orbital electron populations 1.70035 1.05259 1.25468 1.53781 1.25047 0.95252 0.98424 1.00946 0.86311 0.79128 0.83761 0.77704 1.21444 1.21823 1.20471 1.19193 0.92818 0.85074 1.41095 0.91812 1.43978 1.37852 1.01468 1.47885 1.20841 0.97324 0.87055 0.92459 1.21615 0.96279 0.98542 0.97153 1.21945 0.97949 0.91272 0.98752 1.23529 0.96119 1.02628 0.99939 1.21857 0.93045 0.91281 0.97029 0.85067 1.45127 1.40149 1.34402 1.14278 1.16949 0.81219 0.80079 0.83396 1.90755 1.53292 1.71298 1.28348 1.19355 1.06820 1.03999 0.94514 1.21071 0.96041 0.97101 0.98458 1.21681 1.08735 1.04437 0.84064 1.41536 1.25782 1.22561 1.10386 1.21689 1.00188 0.93200 0.92449 1.20798 0.99711 1.01825 0.93895 1.21146 0.96630 0.95543 1.00798 1.20926 1.00081 0.98284 0.90424 1.18637 0.92968 0.94059 0.94099 1.21871 0.99666 0.93137 0.99797 1.20766 0.88762 0.98684 0.87079 0.93655 0.96332 0.92802 0.93675 0.91780 0.88421 0.89150 0.76568 0.82857 0.80909 0.81924 0.83482 0.84417 0.82588 0.92161 0.93030 0.96372 0.89220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.24 11.23 55.49 0.62 -25.62 16 2 C 0.00 0.05 4.88 -17.43 -0.09 -0.03 16 3 Si 0.90 21.81 29.59 -169.99 -5.03 16.78 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.25 -6.92 9.54 -15.06 -0.14 -7.07 16 8 H 0.06 1.72 7.89 -52.49 -0.41 1.31 16 9 N -0.59 -14.75 2.94 -172.26 -0.51 -15.25 16 10 C 0.15 3.10 6.52 -3.67 -0.02 3.08 16 11 C -0.10 -1.64 5.37 -26.46 -0.14 -1.78 16 12 C -0.10 -1.67 1.94 -154.49 -0.30 -1.97 16 13 C -0.18 -2.79 9.87 -26.79 -0.26 -3.06 16 14 C 0.07 1.15 6.14 -68.01 -0.42 0.73 16 15 H 0.13 2.22 7.40 -51.93 -0.38 1.83 16 16 N -0.69 -9.74 5.34 -55.33 -0.30 -10.04 16 17 C 0.59 9.14 7.77 -13.06 -0.10 9.04 16 18 O -0.56 -10.16 15.22 5.12 0.08 -10.08 16 19 C -0.24 -3.10 6.20 -104.46 -0.65 -3.75 16 20 C -0.11 -1.05 10.27 -39.56 -0.41 -1.46 16 21 C -0.06 -0.55 11.53 -16.58 -0.19 -0.74 16 22 N -0.34 -3.22 2.92 -60.81 -0.18 -3.40 16 23 C 0.05 0.30 10.89 -16.53 -0.18 0.12 16 24 C -0.14 -0.85 9.98 -39.95 -0.40 -1.25 16 25 C -0.12 -0.92 10.09 -39.49 -0.40 -1.32 16 26 C -0.08 -0.86 9.72 -39.50 -0.38 -1.24 16 27 C 0.11 1.36 6.70 -83.92 -0.56 0.80 16 28 C -0.11 -2.06 5.83 -26.46 -0.15 -2.22 16 29 C 0.17 4.14 5.40 -3.68 -0.02 4.12 16 30 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 1.09 7.92 -51.93 -0.41 0.68 16 33 H 0.04 0.63 6.75 -51.93 -0.35 0.28 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.40 4.77 6.09 -40.82 -0.25 4.52 16 38 H 0.15 1.17 7.53 -52.49 -0.40 0.77 16 39 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.16 0.49 8.06 -52.48 -0.42 0.06 16 41 H 0.15 0.40 8.06 -52.48 -0.42 -0.02 16 42 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.16 1.85 7.07 -52.49 -0.37 1.48 16 44 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.05 0.92 8.10 -51.93 -0.42 0.50 16 46 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 47 H 0.09 2.41 5.93 -51.93 -0.31 2.10 16 LS Contribution 381.24 15.07 5.75 5.75 Total: -1.00 -33.83 381.24 -11.05 -44.87 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -6.67 Total: 4.97 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -4.82 Total: -7.99 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.36 Total: -54.31 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.08 Total: -10.08 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.83 -11.05 -44.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016725022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.341 kcal (2) G-P(sol) polarization free energy of solvation -33.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds