Wall clock time and date at job start Tue Mar 31 2020 22:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86809 * 119.99640 * 2 1 4 4 H 1.48496 * 109.47063 * 269.99750 * 3 2 1 5 5 H 1.48497 * 109.47003 * 30.00108 * 3 2 1 6 6 H 1.48497 * 109.46748 * 149.99890 * 3 2 1 7 7 C 1.38808 * 120.00423 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00267 * 197.85465 * 7 2 1 9 9 N 1.36938 * 120.00064 * 17.85417 * 7 2 1 10 10 C 1.46848 * 120.38377 * 208.91386 * 9 7 2 11 11 C 1.53350 * 108.80789 * 236.87899 * 10 9 7 12 12 C 1.53180 * 108.77217 * 308.68163 * 11 10 9 13 13 C 1.52850 * 117.65740 * 269.98090 * 12 11 10 14 14 C 1.52812 * 117.71901 * 201.11970 * 12 11 10 15 15 H 1.09000 * 117.50452 * 215.12340 * 14 12 11 16 16 N 1.46502 * 117.49963 * 0.13668 * 14 12 11 17 17 C 1.34773 * 120.00024 * 205.00088 * 16 14 12 18 18 O 1.21782 * 119.99857 * 359.97438 * 17 16 14 19 19 C 1.46213 * 120.00319 * 180.02562 * 17 16 14 20 20 C 1.41742 * 126.79263 * 0.02562 * 19 17 16 21 21 C 1.34519 * 107.76969 * 179.97438 * 20 19 17 22 22 N 1.36950 * 109.60614 * 359.97438 * 21 20 19 23 23 C 1.36706 * 131.35152 * 180.02562 * 22 21 20 24 24 C 1.34998 * 120.75654 * 179.97438 * 23 22 21 25 25 C 1.40309 * 120.37995 * 0.02562 * 24 23 22 26 26 C 1.36331 * 119.45679 * 0.02562 * 25 24 23 27 27 C 1.36944 * 108.74093 * 359.97438 * 22 21 20 28 28 C 1.53185 * 115.07487 * 55.44264 * 12 11 10 29 29 C 1.46839 * 120.38132 * 28.88251 * 9 7 2 30 30 H 0.96999 * 120.00077 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.58576 * 117.07742 * 10 9 7 32 32 H 1.09002 * 109.57846 * 356.67443 * 10 9 7 33 33 H 1.09002 * 109.58882 * 188.89568 * 11 10 9 34 34 H 1.09004 * 109.58860 * 68.46652 * 11 10 9 35 35 H 1.09001 * 117.50748 * 144.80965 * 13 12 11 36 36 H 1.08998 * 117.50358 * 359.75056 * 13 12 11 37 37 H 0.97005 * 119.99973 * 25.00081 * 16 14 12 38 38 H 1.07994 * 126.11689 * 359.97438 * 20 19 17 39 39 H 1.08001 * 125.19493 * 179.97438 * 21 20 19 40 40 H 1.08008 * 119.61767 * 359.97438 * 23 22 21 41 41 H 1.08005 * 119.80932 * 180.28202 * 24 23 22 42 42 H 1.07996 * 120.26746 * 180.02562 * 25 24 23 43 43 H 1.08000 * 120.33778 * 179.97438 * 26 25 24 44 44 H 1.09000 * 109.58324 * 64.35330 * 28 12 11 45 45 H 1.08999 * 109.58877 * 184.77152 * 28 12 11 46 46 H 1.09008 * 109.57995 * 242.92310 * 29 9 7 47 47 H 1.09002 * 109.58123 * 3.32540 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0513 -1.2247 0.2862 9 7 1.3752 -2.3593 -0.3647 10 6 1.8053 -3.6490 0.1905 11 6 2.1668 -4.5891 -0.9657 12 6 1.0061 -4.6104 -1.9651 13 6 -0.0882 -5.6575 -1.7593 14 6 0.9062 -5.8048 -2.9131 15 1 0.5386 -5.6173 -3.9220 16 7 1.9279 -6.8482 -2.7966 17 6 2.2162 -7.6303 -3.8556 18 8 1.6270 -7.4700 -4.9093 19 6 3.2355 -8.6721 -3.7393 20 6 4.0035 -8.9837 -2.5894 21 6 4.8216 -10.0035 -2.9061 22 7 4.6181 -10.3679 -4.2104 23 6 5.2003 -11.3371 -4.9788 24 6 4.8295 -11.5143 -6.2647 25 6 3.8370 -10.7029 -6.8352 26 6 3.2490 -9.7319 -6.0802 27 6 3.6464 -9.5646 -4.7452 28 6 0.5856 -3.2384 -2.5010 29 6 0.2557 -2.3249 -1.3142 30 1 -0.4850 0.8400 0.0004 31 1 0.9946 -4.0838 0.7751 32 1 2.6778 -3.5000 0.8267 33 1 2.3355 -5.5946 -0.5801 34 1 3.0688 -4.2293 -1.4609 35 1 -1.1104 -5.3731 -2.0089 36 1 0.0179 -6.3369 -0.9136 37 1 2.3970 -6.9762 -1.9572 38 1 3.9428 -8.4906 -1.6305 39 1 5.5306 -10.4644 -2.2343 40 1 5.9659 -11.9683 -4.5521 41 1 5.2964 -12.2877 -6.8565 42 1 3.5414 -10.8465 -7.8639 43 1 2.4839 -9.0990 -6.5050 44 1 1.4023 -2.8059 -3.0790 45 1 -0.2950 -3.3475 -3.1341 46 1 -0.6511 -2.6777 -0.8228 47 1 0.1083 -1.3046 -1.6684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016725022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:56 Heat of formation + Delta-G solvation = 69.332477 kcal Electronic energy + Delta-G solvation = -28520.989518 eV Core-core repulsion = 24670.228229 eV Total energy + Delta-G solvation = -3850.761290 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.23240 -40.92443 -39.49555 -37.50865 -37.07890 -34.45923 -33.93958 -33.25924 -31.66300 -30.90347 -29.99284 -28.91735 -26.23258 -24.98875 -24.50729 -24.03133 -22.99732 -22.42435 -22.06487 -21.03528 -19.79365 -18.97696 -18.31126 -17.62828 -17.18601 -16.97707 -16.70616 -16.56170 -16.38217 -15.71775 -15.52079 -15.41434 -15.28346 -15.13992 -14.90881 -14.65132 -14.14407 -14.03393 -13.79027 -13.61069 -13.28417 -13.09744 -12.87114 -12.82342 -12.59004 -12.52964 -12.51418 -12.27106 -12.24148 -11.99233 -11.77724 -11.39284 -11.34876 -11.25516 -11.00749 -10.68333 -10.46673 -9.69878 -9.59584 -8.61658 -8.35089 -7.84892 -5.31226 -0.24320 0.25090 1.31809 1.46458 1.48801 1.56874 1.64940 2.28346 2.31983 2.52255 2.65461 3.03326 3.29751 3.59142 3.66020 3.82042 3.83772 3.89908 3.95154 3.99875 4.02154 4.06744 4.15124 4.27002 4.43983 4.54160 4.64832 4.74232 4.77211 4.84054 4.85961 4.90450 4.93089 5.01470 5.03874 5.09793 5.18448 5.23788 5.31315 5.32935 5.36836 5.39112 5.53873 5.58934 5.66764 5.69418 5.78250 5.85760 6.30358 6.42420 6.66373 7.17392 7.34531 7.89926 8.41198 9.20132 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023308 B = 0.002155 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.016581 B =12987.051392 C =13287.079855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.052 4.052 3 Si 0.964 3.036 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.261 4.261 8 H 0.065 0.935 9 N -0.609 5.609 10 C 0.146 3.854 11 C -0.082 4.082 12 C -0.113 4.113 13 C -0.169 4.169 14 C 0.086 3.914 15 H 0.115 0.885 16 N -0.683 5.683 17 C 0.588 3.412 18 O -0.599 6.599 19 C -0.285 4.285 20 C -0.112 4.112 21 C -0.058 4.058 22 N -0.342 5.342 23 C 0.050 3.950 24 C -0.147 4.147 25 C -0.096 4.096 26 C -0.129 4.129 27 C 0.096 3.904 28 C -0.094 4.094 29 C 0.182 3.818 30 H 0.249 0.751 31 H 0.019 0.981 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.411 0.589 38 H 0.173 0.827 39 H 0.214 0.786 40 H 0.208 0.792 41 H 0.189 0.811 42 H 0.161 0.839 43 H 0.130 0.870 44 H 0.046 0.954 45 H 0.065 0.935 46 H 0.001 0.999 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.077 -28.780 -9.114 32.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.247 4.247 3 Si 0.793 3.207 4 H -0.215 1.215 5 H -0.221 1.221 6 H -0.192 1.192 7 C -0.391 4.391 8 H 0.083 0.917 9 N -0.332 5.332 10 C 0.020 3.980 11 C -0.121 4.121 12 C -0.115 4.115 13 C -0.207 4.207 14 C -0.021 4.021 15 H 0.133 0.867 16 N -0.332 5.332 17 C 0.381 3.619 18 O -0.483 6.483 19 C -0.295 4.295 20 C -0.133 4.133 21 C -0.182 4.182 22 N -0.005 5.005 23 C -0.071 4.071 24 C -0.166 4.166 25 C -0.117 4.117 26 C -0.148 4.148 27 C -0.014 4.014 28 C -0.134 4.134 29 C 0.056 3.944 30 H 0.058 0.942 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.118 0.882 36 H 0.128 0.872 37 H 0.248 0.752 38 H 0.190 0.810 39 H 0.230 0.770 40 H 0.224 0.776 41 H 0.206 0.794 42 H 0.178 0.822 43 H 0.148 0.852 44 H 0.065 0.935 45 H 0.084 0.916 46 H 0.019 0.981 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.769 -28.728 -9.779 32.549 hybrid contribution -0.109 1.571 0.402 1.626 sum 11.659 -27.157 -9.377 31.006 Atomic orbital electron populations 1.70183 1.06646 1.25780 1.55336 1.25793 0.96016 1.01494 1.01420 0.85309 0.78236 0.79742 0.77440 1.21494 1.22143 1.19195 1.19514 0.93074 0.86314 1.40213 0.91691 1.44244 1.37876 1.02465 1.48591 1.21006 0.97227 0.85879 0.93856 1.21441 0.95601 0.99548 0.95502 1.21803 0.99366 0.90366 0.99965 1.23609 0.95734 1.01259 1.00094 1.21580 0.93476 0.90693 0.96304 0.86673 1.44996 1.39825 1.33693 1.14675 1.17415 0.81302 0.80413 0.82798 1.90719 1.55038 1.72646 1.29897 1.19296 1.08350 1.05085 0.96741 1.21363 0.95802 0.97789 0.98349 1.22308 1.08379 1.03579 0.83931 1.41830 1.25137 1.22627 1.10955 1.22587 0.99890 0.92029 0.92555 1.21321 0.98918 1.02109 0.94243 1.21569 0.95248 0.93470 1.01416 1.20844 1.02054 1.00730 0.91211 1.18807 0.93720 0.94498 0.94423 1.21636 0.99803 0.93954 0.97976 1.20518 0.88163 0.97527 0.88212 0.94152 0.96321 0.92548 0.89745 0.92687 0.88157 0.87221 0.75178 0.80964 0.76954 0.77572 0.79406 0.82182 0.85225 0.93532 0.91646 0.98133 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.23 11.23 21.65 0.24 -55.99 16 2 C -0.05 -2.95 4.88 84.86 0.41 -2.54 16 3 Si 0.96 45.74 29.59 68.60 2.03 47.77 16 4 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.26 -14.57 9.54 84.03 0.80 -13.77 16 8 H 0.07 3.54 7.89 -2.91 -0.02 3.51 16 9 N -0.61 -31.04 2.94 -698.89 -2.05 -33.09 16 10 C 0.15 5.96 6.52 86.43 0.56 6.53 16 11 C -0.08 -2.68 5.37 30.77 0.17 -2.51 16 12 C -0.11 -3.83 1.94 -52.17 -0.10 -3.93 16 13 C -0.17 -4.92 9.87 30.56 0.30 -4.62 16 14 C 0.09 2.67 6.14 44.94 0.28 2.95 16 15 H 0.12 4.02 7.40 -2.39 -0.02 4.00 16 16 N -0.68 -18.98 5.34 -447.14 -2.39 -21.37 16 17 C 0.59 18.74 7.77 86.31 0.67 19.41 16 18 O -0.60 -23.36 15.22 -4.61 -0.07 -23.43 16 19 C -0.29 -7.51 6.20 -19.76 -0.12 -7.63 16 20 C -0.11 -2.04 10.27 22.28 0.23 -1.81 16 21 C -0.06 -0.80 11.53 83.04 0.96 0.15 16 22 N -0.34 -5.60 2.92 -346.30 -1.01 -6.61 16 23 C 0.05 0.44 10.89 83.19 0.91 1.34 16 24 C -0.15 -1.15 9.98 22.03 0.22 -0.93 16 25 C -0.10 -1.30 10.09 22.33 0.23 -1.08 16 26 C -0.13 -2.93 9.72 22.32 0.22 -2.71 16 27 C 0.10 2.33 6.70 39.42 0.26 2.60 16 28 C -0.09 -3.80 5.83 30.77 0.18 -3.62 16 29 C 0.18 9.03 5.40 86.43 0.47 9.50 16 30 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 31 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 2.24 7.92 -2.39 -0.02 2.22 16 33 H 0.08 2.10 6.75 -2.39 -0.02 2.08 16 34 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 36 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 37 H 0.41 9.15 6.09 -92.70 -0.56 8.58 16 38 H 0.17 2.20 7.53 -2.91 -0.02 2.18 16 39 H 0.21 1.03 8.06 -2.91 -0.02 1.01 16 40 H 0.21 -0.07 8.06 -2.91 -0.02 -0.10 16 41 H 0.19 -0.06 8.06 -2.91 -0.02 -0.08 16 42 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 43 H 0.13 3.48 7.07 -2.91 -0.02 3.46 16 44 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.06 2.40 8.10 -2.39 -0.02 2.38 16 46 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 47 H 0.05 3.04 5.93 -2.39 -0.01 3.03 16 Total: -1.00 -79.07 381.24 3.81 -75.26 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.42 Total: 20.14 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: 6.63 Total: -2.68 kcal Atomic # 7 Polarization: -111.86 SS G_CDS: -5.21 Total: -117.06 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.07 Total: -23.43 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -79.07 3.81 -75.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016725022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.596 kcal (2) G-P(sol) polarization free energy of solvation -79.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds