Wall clock time and date at job start Tue Mar 31 2020 22:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 120.00094 * 2 1 4 4 H 1.48495 * 109.47352 * 240.00084 * 3 2 1 5 5 H 1.48506 * 109.47190 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46973 * 119.99941 * 3 2 1 7 7 C 1.38809 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99898 * 197.84820 * 7 2 1 9 9 N 1.36936 * 120.00456 * 17.84951 * 7 2 1 10 10 C 1.46850 * 120.38314 * 28.90614 * 9 7 2 11 11 C 1.53340 * 108.81212 * 123.07831 * 10 9 7 12 12 C 1.53179 * 108.76826 * 51.31868 * 11 10 9 13 13 C 1.52844 * 117.65815 * 90.01736 * 12 11 10 14 14 C 1.52917 * 117.71195 * 158.85283 * 12 11 10 15 15 H 1.09003 * 117.52488 * 144.91929 * 14 12 11 16 16 N 1.46500 * 117.49175 * 359.85927 * 14 12 11 17 17 C 1.34783 * 119.99819 * 155.05269 * 16 14 12 18 18 O 1.21773 * 119.99980 * 0.02562 * 17 16 14 19 19 C 1.46204 * 119.99870 * 179.97438 * 17 16 14 20 20 C 1.41737 * 126.80290 * 0.02947 * 19 17 16 21 21 C 1.34518 * 107.78166 * 179.97438 * 20 19 17 22 22 N 1.36955 * 109.59994 * 359.97438 * 21 20 19 23 23 C 1.36704 * 131.34700 * 180.02562 * 22 21 20 24 24 C 1.35003 * 120.75058 * 179.97438 * 23 22 21 25 25 C 1.40304 * 120.38472 * 359.97438 * 24 23 22 26 26 C 1.36341 * 119.45625 * 359.97438 * 25 24 23 27 27 C 1.36945 * 108.74441 * 359.75056 * 22 21 20 28 28 C 1.53188 * 115.07716 * 304.54775 * 12 11 10 29 29 C 1.46841 * 120.38640 * 208.88947 * 9 7 2 30 30 H 0.96999 * 120.00309 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.57793 * 3.27935 * 10 9 7 32 32 H 1.09002 * 109.69161 * 242.94611 * 10 9 7 33 33 H 1.09009 * 109.58960 * 291.53303 * 11 10 9 34 34 H 1.09001 * 109.58928 * 171.10677 * 11 10 9 35 35 H 1.08996 * 117.50429 * 215.18746 * 13 12 11 36 36 H 1.09001 * 117.50185 * 0.21371 * 13 12 11 37 37 H 0.97000 * 120.00563 * 335.05791 * 16 14 12 38 38 H 1.08004 * 126.11221 * 359.95204 * 20 19 17 39 39 H 1.07992 * 125.20290 * 180.02562 * 21 20 19 40 40 H 1.07995 * 119.62517 * 359.97386 * 23 22 21 41 41 H 1.08004 * 119.80387 * 179.97438 * 24 23 22 42 42 H 1.07997 * 120.27459 * 179.97438 * 25 24 23 43 43 H 1.07995 * 120.34283 * 179.97438 * 26 25 24 44 44 H 1.08999 * 109.58832 * 175.22778 * 28 12 11 45 45 H 1.09002 * 109.58719 * 295.65918 * 28 12 11 46 46 H 1.09005 * 109.57333 * 356.71545 * 29 9 7 47 47 H 1.09001 * 109.58325 * 117.11410 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0512 -1.2248 0.2861 9 7 1.3750 -2.3594 -0.3645 10 6 0.2557 -2.3251 -1.3145 11 6 0.5864 -3.2379 -2.5015 12 6 1.0069 -4.6099 -1.9658 13 6 -0.0872 -5.6573 -1.7606 14 6 0.9069 -5.8049 -2.9147 15 1 1.6668 -6.5817 -2.8284 16 7 0.4120 -5.5525 -4.2703 17 6 0.7531 -6.3808 -5.2774 18 8 1.4722 -7.3393 -5.0603 19 6 0.2588 -6.1292 -6.6301 20 6 -0.5809 -5.0646 -7.0429 21 6 -0.7969 -5.2003 -8.3637 22 7 -0.1340 -6.3057 -8.8265 23 6 -0.0483 -6.8492 -10.0779 24 6 0.6796 -7.9648 -10.2976 25 6 1.3625 -8.5861 -9.2411 26 6 1.2862 -8.0536 -7.9883 27 6 0.5282 -6.8916 -7.7808 28 6 2.1674 -4.5888 -0.9661 29 6 1.8053 -3.6490 0.1902 30 1 -0.4850 0.8400 -0.0004 31 1 0.1080 -1.3047 -1.6684 32 1 -0.6525 -2.6769 -0.8250 33 1 1.4033 -2.8049 -3.0790 34 1 -0.2939 -3.3470 -3.1349 35 1 0.0187 -6.3369 -0.9151 36 1 -1.1095 -5.3728 -2.0101 37 1 -0.1610 -4.7892 -4.4432 38 1 -0.9770 -4.2841 -6.4101 39 1 -1.4002 -4.5382 -8.9671 40 1 -0.5687 -6.3808 -10.9002 41 1 0.7364 -8.3815 -11.2924 42 1 1.9439 -9.4787 -9.4187 43 1 1.8058 -8.5203 -7.1645 44 1 2.3361 -5.5944 -0.5807 45 1 3.0695 -4.2288 -1.4610 46 1 2.6777 -3.4999 0.8266 47 1 0.9946 -4.0842 0.7745 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016725023.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:59 Heat of formation + Delta-G solvation = 88.363449 kcal Electronic energy + Delta-G solvation = -28597.221146 eV Core-core repulsion = 24747.285101 eV Total energy + Delta-G solvation = -3849.936045 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.53215 -39.63711 -38.14453 -36.84204 -35.37804 -33.29933 -32.91822 -31.43582 -30.21577 -30.05066 -28.49328 -27.92876 -24.32064 -24.10976 -23.76744 -22.39590 -21.72862 -21.56181 -20.62337 -19.92758 -18.25770 -18.02818 -16.95069 -16.47205 -16.21860 -15.94297 -15.80047 -15.57806 -14.82155 -14.63615 -14.37094 -14.19477 -14.04369 -13.55993 -13.40282 -13.19085 -13.00267 -12.93542 -12.53784 -12.19470 -12.15015 -11.92958 -11.68862 -11.62377 -11.43540 -11.29691 -10.91362 -10.68910 -10.60063 -10.46240 -10.23869 -9.94716 -9.78348 -9.64722 -9.51922 -9.26811 -8.98509 -8.42340 -8.33193 -7.61720 -6.59973 -5.75962 -3.18551 0.43717 0.93173 2.15073 2.31648 3.04704 3.38977 3.40271 3.45714 3.47751 3.62040 4.14150 4.33130 4.45323 4.49040 4.52697 4.61880 4.79116 4.91953 5.10095 5.13492 5.24266 5.26547 5.39647 5.42666 5.48831 5.52667 5.58918 5.69776 5.84346 5.94239 6.01950 6.03701 6.13163 6.17881 6.24522 6.34657 6.41493 6.52158 6.56611 6.63543 6.69603 6.75516 6.80835 6.89042 6.91959 7.05458 7.38615 7.68842 7.75682 7.82583 8.46640 8.49853 9.25231 9.89082 10.46016 11.31799 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017951 B = 0.002358 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.391904 B =11873.462280 C =12744.280146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.251 4.251 8 H 0.064 0.936 9 N -0.590 5.590 10 C 0.174 3.826 11 C -0.104 4.104 12 C -0.098 4.098 13 C -0.184 4.184 14 C 0.074 3.926 15 H 0.131 0.869 16 N -0.691 5.691 17 C 0.595 3.405 18 O -0.559 6.559 19 C -0.238 4.238 20 C -0.104 4.104 21 C -0.064 4.064 22 N -0.339 5.339 23 C 0.047 3.953 24 C -0.143 4.143 25 C -0.120 4.120 26 C -0.078 4.078 27 C 0.111 3.889 28 C -0.098 4.098 29 C 0.149 3.851 30 H 0.254 0.746 31 H 0.089 0.911 32 H 0.017 0.983 33 H 0.061 0.939 34 H 0.043 0.957 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.400 0.600 38 H 0.155 0.845 39 H 0.174 0.826 40 H 0.163 0.837 41 H 0.147 0.853 42 H 0.138 0.862 43 H 0.156 0.844 44 H 0.053 0.947 45 H 0.063 0.937 46 H 0.054 0.946 47 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.665 -15.041 -20.757 25.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.143 4.143 12 C -0.100 4.100 13 C -0.222 4.222 14 C -0.032 4.032 15 H 0.149 0.851 16 N -0.339 5.339 17 C 0.384 3.616 18 O -0.439 6.439 19 C -0.247 4.247 20 C -0.126 4.126 21 C -0.189 4.189 22 N -0.003 5.003 23 C -0.075 4.075 24 C -0.163 4.163 25 C -0.141 4.141 26 C -0.097 4.097 27 C 0.002 3.998 28 C -0.137 4.137 29 C 0.023 3.977 30 H 0.064 0.936 31 H 0.107 0.893 32 H 0.036 0.964 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.236 0.764 38 H 0.172 0.828 39 H 0.191 0.809 40 H 0.181 0.819 41 H 0.165 0.835 42 H 0.156 0.844 43 H 0.174 0.826 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.073 0.927 47 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -2.358 -15.520 -20.818 26.073 hybrid contribution -0.072 1.335 -0.214 1.354 sum -2.429 -14.185 -21.032 25.485 Atomic orbital electron populations 1.70026 1.05250 1.25539 1.53858 1.25034 0.95247 0.98397 1.00995 0.86395 0.78955 0.83432 0.78153 1.21065 1.21687 1.20896 1.19157 0.92827 0.85085 1.41051 0.91846 1.43962 1.37817 1.01545 1.47850 1.20742 0.88842 0.98602 0.87071 1.21795 0.99086 0.93630 0.99794 1.21959 0.98206 0.91196 0.98619 1.23528 0.95902 1.03016 0.99779 1.21841 1.00800 1.02188 0.78370 0.85147 1.45131 1.51862 1.29658 1.07256 1.16942 0.79524 0.81899 0.83197 1.90743 1.38618 1.30064 1.84468 1.19353 1.11190 1.01567 0.92603 1.21099 0.98746 0.98482 0.94251 1.21692 1.07791 0.93519 0.95890 1.41541 1.32250 1.19609 1.06872 1.21691 1.02624 0.97099 0.86050 1.20791 0.98997 0.95674 1.00843 1.21140 1.00059 1.00787 0.92161 1.20917 0.97161 0.92985 0.98654 1.18637 0.98334 0.95982 0.86843 1.21682 0.95954 0.99233 0.96834 1.20858 0.97379 0.86906 0.92574 0.93648 0.89281 0.96438 0.92081 0.93829 0.88576 0.89012 0.76399 0.82777 0.80874 0.81925 0.83503 0.84449 0.82617 0.92878 0.91870 0.92724 0.96269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.03 11.23 55.49 0.62 -25.41 16 2 C 0.00 0.05 4.88 -17.43 -0.09 -0.04 16 3 Si 0.90 21.69 29.59 -169.99 -5.03 16.66 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.25 -6.90 9.54 -15.06 -0.14 -7.05 16 8 H 0.06 1.72 7.89 -52.49 -0.41 1.30 16 9 N -0.59 -14.74 2.94 -172.26 -0.51 -15.25 16 10 C 0.17 4.07 5.40 -3.68 -0.02 4.05 16 11 C -0.10 -1.94 5.37 -26.46 -0.14 -2.08 16 12 C -0.10 -1.68 1.94 -154.44 -0.30 -1.98 16 13 C -0.18 -2.79 9.86 -26.79 -0.26 -3.06 16 14 C 0.07 1.15 6.14 -67.95 -0.42 0.74 16 15 H 0.13 2.15 7.40 -51.93 -0.38 1.77 16 16 N -0.69 -10.08 5.34 -55.27 -0.30 -10.37 16 17 C 0.59 9.34 7.77 -13.06 -0.10 9.24 16 18 O -0.56 -10.22 15.22 5.12 0.08 -10.14 16 19 C -0.24 -3.21 6.20 -104.46 -0.65 -3.86 16 20 C -0.10 -1.12 10.27 -39.56 -0.41 -1.52 16 21 C -0.06 -0.58 11.53 -16.58 -0.19 -0.78 16 22 N -0.34 -3.37 2.92 -60.81 -0.18 -3.55 16 23 C 0.05 0.32 10.89 -16.53 -0.18 0.14 16 24 C -0.14 -0.89 9.98 -39.95 -0.40 -1.29 16 25 C -0.12 -0.95 10.09 -39.49 -0.40 -1.35 16 26 C -0.08 -0.87 9.72 -39.50 -0.38 -1.26 16 27 C 0.11 1.39 6.70 -83.91 -0.56 0.83 16 28 C -0.10 -1.74 5.83 -26.45 -0.15 -1.90 16 29 C 0.15 3.16 6.51 -3.68 -0.02 3.13 16 30 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.09 2.34 5.93 -51.93 -0.31 2.03 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 1.21 8.14 -51.92 -0.42 0.78 16 34 H 0.04 0.70 6.75 -51.93 -0.35 0.35 16 35 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.40 5.17 6.09 -40.82 -0.25 4.92 16 38 H 0.15 1.33 7.53 -52.48 -0.40 0.93 16 39 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.16 0.55 8.06 -52.49 -0.42 0.12 16 41 H 0.15 0.44 8.06 -52.48 -0.42 0.02 16 42 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 43 H 0.16 1.86 7.07 -52.49 -0.37 1.49 16 44 H 0.05 0.82 8.10 -51.93 -0.42 0.40 16 45 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 46 H 0.05 1.13 7.92 -51.93 -0.41 0.72 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 381.25 15.07 5.75 5.75 Total: -1.00 -33.56 381.25 -11.05 -44.61 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -6.67 Total: 5.73 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -4.82 Total: -8.02 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -0.36 Total: -54.57 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.08 Total: -10.14 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.56 -11.05 -44.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016725023.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.970 kcal (2) G-P(sol) polarization free energy of solvation -33.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds