Wall clock time and date at job start Tue Mar 31 2020 22:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 120.00094 * 2 1 4 4 H 1.48495 * 109.47352 * 240.00084 * 3 2 1 5 5 H 1.48506 * 109.47190 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46973 * 119.99941 * 3 2 1 7 7 C 1.38809 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99898 * 197.84820 * 7 2 1 9 9 N 1.36936 * 120.00456 * 17.84951 * 7 2 1 10 10 C 1.46850 * 120.38314 * 28.90614 * 9 7 2 11 11 C 1.53340 * 108.81212 * 123.07831 * 10 9 7 12 12 C 1.53179 * 108.76826 * 51.31868 * 11 10 9 13 13 C 1.52844 * 117.65815 * 90.01736 * 12 11 10 14 14 C 1.52917 * 117.71195 * 158.85283 * 12 11 10 15 15 H 1.09003 * 117.52488 * 144.91929 * 14 12 11 16 16 N 1.46500 * 117.49175 * 359.85927 * 14 12 11 17 17 C 1.34783 * 119.99819 * 155.05269 * 16 14 12 18 18 O 1.21773 * 119.99980 * 0.02562 * 17 16 14 19 19 C 1.46204 * 119.99870 * 179.97438 * 17 16 14 20 20 C 1.41737 * 126.80290 * 0.02947 * 19 17 16 21 21 C 1.34518 * 107.78166 * 179.97438 * 20 19 17 22 22 N 1.36955 * 109.59994 * 359.97438 * 21 20 19 23 23 C 1.36704 * 131.34700 * 180.02562 * 22 21 20 24 24 C 1.35003 * 120.75058 * 179.97438 * 23 22 21 25 25 C 1.40304 * 120.38472 * 359.97438 * 24 23 22 26 26 C 1.36341 * 119.45625 * 359.97438 * 25 24 23 27 27 C 1.36945 * 108.74441 * 359.75056 * 22 21 20 28 28 C 1.53188 * 115.07716 * 304.54775 * 12 11 10 29 29 C 1.46841 * 120.38640 * 208.88947 * 9 7 2 30 30 H 0.96999 * 120.00309 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.57793 * 3.27935 * 10 9 7 32 32 H 1.09002 * 109.69161 * 242.94611 * 10 9 7 33 33 H 1.09009 * 109.58960 * 291.53303 * 11 10 9 34 34 H 1.09001 * 109.58928 * 171.10677 * 11 10 9 35 35 H 1.08996 * 117.50429 * 215.18746 * 13 12 11 36 36 H 1.09001 * 117.50185 * 0.21371 * 13 12 11 37 37 H 0.97000 * 120.00563 * 335.05791 * 16 14 12 38 38 H 1.08004 * 126.11221 * 359.95204 * 20 19 17 39 39 H 1.07992 * 125.20290 * 180.02562 * 21 20 19 40 40 H 1.07995 * 119.62517 * 359.97386 * 23 22 21 41 41 H 1.08004 * 119.80387 * 179.97438 * 24 23 22 42 42 H 1.07997 * 120.27459 * 179.97438 * 25 24 23 43 43 H 1.07995 * 120.34283 * 179.97438 * 26 25 24 44 44 H 1.08999 * 109.58832 * 175.22778 * 28 12 11 45 45 H 1.09002 * 109.58719 * 295.65918 * 28 12 11 46 46 H 1.09005 * 109.57333 * 356.71545 * 29 9 7 47 47 H 1.09001 * 109.58325 * 117.11410 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0512 -1.2248 0.2861 9 7 1.3750 -2.3594 -0.3645 10 6 0.2557 -2.3251 -1.3145 11 6 0.5864 -3.2379 -2.5015 12 6 1.0069 -4.6099 -1.9658 13 6 -0.0872 -5.6573 -1.7606 14 6 0.9069 -5.8049 -2.9147 15 1 1.6668 -6.5817 -2.8284 16 7 0.4120 -5.5525 -4.2703 17 6 0.7531 -6.3808 -5.2774 18 8 1.4722 -7.3393 -5.0603 19 6 0.2588 -6.1292 -6.6301 20 6 -0.5809 -5.0646 -7.0429 21 6 -0.7969 -5.2003 -8.3637 22 7 -0.1340 -6.3057 -8.8265 23 6 -0.0483 -6.8492 -10.0779 24 6 0.6796 -7.9648 -10.2976 25 6 1.3625 -8.5861 -9.2411 26 6 1.2862 -8.0536 -7.9883 27 6 0.5282 -6.8916 -7.7808 28 6 2.1674 -4.5888 -0.9661 29 6 1.8053 -3.6490 0.1902 30 1 -0.4850 0.8400 -0.0004 31 1 0.1080 -1.3047 -1.6684 32 1 -0.6525 -2.6769 -0.8250 33 1 1.4033 -2.8049 -3.0790 34 1 -0.2939 -3.3470 -3.1349 35 1 0.0187 -6.3369 -0.9151 36 1 -1.1095 -5.3728 -2.0101 37 1 -0.1610 -4.7892 -4.4432 38 1 -0.9770 -4.2841 -6.4101 39 1 -1.4002 -4.5382 -8.9671 40 1 -0.5687 -6.3808 -10.9002 41 1 0.7364 -8.3815 -11.2924 42 1 1.9439 -9.4787 -9.4187 43 1 1.8058 -8.5203 -7.1645 44 1 2.3361 -5.5944 -0.5807 45 1 3.0695 -4.2288 -1.4610 46 1 2.6777 -3.4999 0.8266 47 1 0.9946 -4.0842 0.7745 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016725023.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:59 Heat of formation + Delta-G solvation = 69.688644 kcal Electronic energy + Delta-G solvation = -28598.030946 eV Core-core repulsion = 24747.285101 eV Total energy + Delta-G solvation = -3850.745845 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.24417 -40.91647 -39.49422 -37.51649 -37.06807 -34.50561 -33.95281 -33.14383 -31.73871 -30.92901 -29.96528 -28.91958 -26.22586 -24.99175 -24.51433 -24.01822 -23.01639 -22.43723 -22.04695 -21.02207 -19.80627 -18.96901 -18.33875 -17.59136 -17.22308 -16.91394 -16.74762 -16.57117 -16.39505 -15.70832 -15.51968 -15.42055 -15.33369 -15.15527 -14.89015 -14.60619 -14.14776 -14.04359 -13.76268 -13.61326 -13.31981 -13.04240 -12.90767 -12.83019 -12.55716 -12.53418 -12.51704 -12.32260 -12.27193 -11.98666 -11.76909 -11.39586 -11.33928 -11.24910 -10.99824 -10.67079 -10.46773 -9.70861 -9.60176 -8.60840 -8.35943 -7.84805 -5.30751 -0.24922 0.24248 1.29982 1.47355 1.49466 1.56403 1.64017 2.28200 2.31352 2.52827 2.64891 3.03448 3.29697 3.58197 3.66242 3.82656 3.83953 3.88941 3.93971 3.99544 4.02268 4.06174 4.15201 4.26597 4.42595 4.54118 4.65980 4.72596 4.75944 4.83722 4.86590 4.89382 4.92660 5.01098 5.01743 5.10384 5.22753 5.23198 5.30503 5.32434 5.35955 5.38353 5.54084 5.57206 5.66548 5.68547 5.79784 5.84875 6.28768 6.42742 6.64050 7.18097 7.32535 7.90107 8.41501 9.20124 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017951 B = 0.002358 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.391904 B =11873.462280 C =12744.280146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.049 4.049 3 Si 0.964 3.036 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.264 4.264 8 H 0.062 0.938 9 N -0.609 5.609 10 C 0.181 3.819 11 C -0.088 4.088 12 C -0.115 4.115 13 C -0.169 4.169 14 C 0.086 3.914 15 H 0.123 0.877 16 N -0.687 5.687 17 C 0.590 3.410 18 O -0.597 6.597 19 C -0.287 4.287 20 C -0.115 4.115 21 C -0.059 4.059 22 N -0.342 5.342 23 C 0.049 3.951 24 C -0.146 4.146 25 C -0.094 4.094 26 C -0.128 4.128 27 C 0.098 3.902 28 C -0.087 4.087 29 C 0.147 3.853 30 H 0.250 0.750 31 H 0.056 0.944 32 H 0.000 1.000 33 H 0.047 0.953 34 H 0.069 0.931 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.408 0.592 38 H 0.168 0.832 39 H 0.212 0.788 40 H 0.207 0.793 41 H 0.190 0.810 42 H 0.163 0.837 43 H 0.132 0.868 44 H 0.081 0.919 45 H 0.052 0.948 46 H 0.052 0.948 47 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.161 -15.849 -24.043 28.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.244 4.244 3 Si 0.792 3.208 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.202 1.202 7 C -0.395 4.395 8 H 0.079 0.921 9 N -0.332 5.332 10 C 0.055 3.945 11 C -0.127 4.127 12 C -0.117 4.117 13 C -0.208 4.208 14 C -0.020 4.020 15 H 0.141 0.859 16 N -0.335 5.335 17 C 0.382 3.618 18 O -0.480 6.480 19 C -0.296 4.296 20 C -0.136 4.136 21 C -0.183 4.183 22 N -0.005 5.005 23 C -0.072 4.072 24 C -0.165 4.165 25 C -0.116 4.116 26 C -0.147 4.147 27 C -0.013 4.013 28 C -0.126 4.126 29 C 0.021 3.979 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.018 0.982 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.128 0.872 36 H 0.117 0.883 37 H 0.245 0.755 38 H 0.185 0.815 39 H 0.229 0.771 40 H 0.223 0.777 41 H 0.207 0.793 42 H 0.180 0.820 43 H 0.150 0.850 44 H 0.099 0.901 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -2.860 -16.326 -24.107 29.255 hybrid contribution 0.092 1.465 0.651 1.606 sum -2.769 -14.862 -23.455 27.905 Atomic orbital electron populations 1.70169 1.06531 1.25903 1.55126 1.25758 0.96029 1.01350 1.01281 0.85393 0.77663 0.79466 0.78242 1.20642 1.21813 1.20231 1.19453 0.93013 0.86398 1.40600 0.92057 1.44235 1.37999 1.02256 1.48687 1.20546 0.88001 0.97741 0.88226 1.21524 0.99693 0.93560 0.97894 1.21830 0.99228 0.90839 0.99762 1.23608 0.95700 1.01612 0.99832 1.21664 1.00850 1.00499 0.79021 0.85886 1.45068 1.51841 1.29896 1.06737 1.17364 0.78898 0.81301 0.84225 1.90703 1.40496 1.31664 1.85159 1.19311 1.14233 1.04140 0.91914 1.21340 0.98537 0.98213 0.95494 1.22267 1.07057 0.93268 0.95668 1.41825 1.31693 1.19624 1.07384 1.22592 1.01923 0.96987 0.85667 1.21331 0.97858 0.95272 1.02026 1.21584 0.98223 1.00551 0.91209 1.20852 0.99785 0.94346 0.99745 1.18820 0.98581 0.96316 0.87561 1.21528 0.95761 0.99660 0.95664 1.20976 0.97100 0.86000 0.93809 0.94052 0.92536 0.98175 0.93413 0.91225 0.87163 0.88263 0.75491 0.81492 0.77084 0.77664 0.79330 0.81985 0.85004 0.90083 0.92922 0.92921 0.96340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.19 11.23 21.65 0.24 -54.95 16 2 C -0.05 -2.74 4.88 84.86 0.41 -2.33 16 3 Si 0.96 45.33 29.59 68.60 2.03 47.36 16 4 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 6 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 7 C -0.26 -14.83 9.54 84.03 0.80 -14.02 16 8 H 0.06 3.38 7.89 -2.91 -0.02 3.36 16 9 N -0.61 -31.16 2.94 -698.90 -2.05 -33.21 16 10 C 0.18 8.72 5.40 86.43 0.47 9.18 16 11 C -0.09 -3.30 5.37 30.77 0.17 -3.13 16 12 C -0.12 -3.89 1.94 -52.14 -0.10 -3.99 16 13 C -0.17 -4.94 9.86 30.55 0.30 -4.64 16 14 C 0.09 2.66 6.14 44.98 0.28 2.94 16 15 H 0.12 4.07 7.40 -2.39 -0.02 4.05 16 16 N -0.69 -20.25 5.34 -446.97 -2.39 -22.64 16 17 C 0.59 19.33 7.77 86.31 0.67 20.00 16 18 O -0.60 -23.14 15.22 -4.58 -0.07 -23.21 16 19 C -0.29 -7.97 6.20 -19.76 -0.12 -8.09 16 20 C -0.11 -2.38 10.27 22.28 0.23 -2.15 16 21 C -0.06 -0.93 11.53 83.04 0.96 0.03 16 22 N -0.34 -6.03 2.92 -346.30 -1.01 -7.04 16 23 C 0.05 0.47 10.89 83.19 0.91 1.38 16 24 C -0.15 -1.21 9.98 22.03 0.22 -0.99 16 25 C -0.09 -1.29 10.09 22.33 0.23 -1.07 16 26 C -0.13 -2.93 9.72 22.32 0.22 -2.71 16 27 C 0.10 2.46 6.70 39.43 0.26 2.73 16 28 C -0.09 -3.07 5.83 30.77 0.18 -2.89 16 29 C 0.15 6.25 6.51 86.43 0.56 6.81 16 30 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 31 H 0.06 3.08 5.93 -2.38 -0.01 3.07 16 32 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 33 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.07 2.22 6.75 -2.39 -0.02 2.20 16 35 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 36 H 0.10 2.77 8.14 -2.39 -0.02 2.76 16 37 H 0.41 10.47 6.09 -92.71 -0.56 9.91 16 38 H 0.17 2.74 7.53 -2.91 -0.02 2.72 16 39 H 0.21 1.51 8.06 -2.91 -0.02 1.48 16 40 H 0.21 0.15 8.06 -2.91 -0.02 0.12 16 41 H 0.19 0.00 8.06 -2.91 -0.02 -0.03 16 42 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 43 H 0.13 3.51 7.07 -2.91 -0.02 3.49 16 44 H 0.08 2.41 8.10 -2.39 -0.02 2.39 16 45 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.05 2.21 7.92 -2.38 -0.02 2.19 16 47 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -77.39 381.25 3.81 -73.58 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.42 Total: 23.04 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 6.63 Total: -2.94 kcal Atomic # 7 Polarization: -112.63 SS G_CDS: -5.21 Total: -117.83 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.07 Total: -23.21 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -77.39 3.81 -73.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016725023.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.272 kcal (2) G-P(sol) polarization free energy of solvation -77.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds