Wall clock time and date at job start Tue Mar 31 2020 22:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 120.00003 * 2 1 4 4 H 1.48497 * 109.47339 * 240.00621 * 3 2 1 5 5 H 1.48508 * 109.47186 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47124 * 120.00214 * 3 2 1 7 7 C 1.38811 * 119.99698 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99736 * 197.84335 * 7 2 1 9 9 N 1.36932 * 120.00331 * 17.84211 * 7 2 1 10 10 C 1.46839 * 120.38332 * 28.91110 * 9 7 2 11 11 C 1.53357 * 108.81421 * 123.07341 * 10 9 7 12 12 C 1.53188 * 108.76265 * 51.31382 * 11 10 9 13 13 C 1.52846 * 117.65384 * 90.02523 * 12 11 10 14 14 C 1.52816 * 117.71087 * 158.88140 * 12 11 10 15 15 H 1.09003 * 117.50564 * 359.86333 * 14 12 11 16 16 N 1.46500 * 117.50391 * 144.90441 * 14 12 11 17 17 C 1.34771 * 120.00091 * 205.00021 * 16 14 12 18 18 O 1.21611 * 120.00231 * 0.02562 * 17 16 14 19 19 C 1.47382 * 119.99951 * 179.97438 * 17 16 14 20 20 C 1.39316 * 120.34094 * 0.02562 * 19 17 16 21 21 C 1.38274 * 120.19394 * 179.97438 * 20 19 17 22 22 C 1.38058 * 120.89105 * 359.97438 * 21 20 19 23 23 C 1.38982 * 120.26569 * 359.97438 * 22 21 20 24 24 N 1.37795 * 133.38076 * 180.02562 * 23 22 21 25 25 H 0.97005 * 125.06893 * 0.02562 * 24 23 22 26 26 C 1.36546 * 109.85849 * 180.02562 * 24 23 22 27 27 C 1.34548 * 109.89542 * 0.02562 * 26 24 23 28 28 C 1.40665 * 119.51585 * 359.76924 * 23 22 21 29 29 C 1.53178 * 115.08098 * 304.55514 * 12 11 10 30 30 C 1.46846 * 120.38056 * 208.88920 * 9 7 2 31 31 H 0.96999 * 120.00088 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.58590 * 3.27228 * 10 9 7 33 33 H 1.09002 * 109.69043 * 242.93777 * 10 9 7 34 34 H 1.08994 * 109.58476 * 291.53456 * 11 10 9 35 35 H 1.08995 * 109.59068 * 171.09621 * 11 10 9 36 36 H 1.09000 * 117.50264 * 215.18195 * 13 12 11 37 37 H 1.09008 * 117.50674 * 0.20503 * 13 12 11 38 38 H 0.97000 * 119.99930 * 24.99661 * 16 14 12 39 39 H 1.07991 * 119.90340 * 359.97438 * 20 19 17 40 40 H 1.08005 * 119.55842 * 180.02562 * 21 20 19 41 41 H 1.07993 * 119.87203 * 180.02562 * 22 21 20 42 42 H 1.07993 * 125.05274 * 179.97438 * 26 24 23 43 43 H 1.07996 * 126.49350 * 180.02562 * 27 26 24 44 44 H 1.08993 * 109.58977 * 175.23141 * 29 12 11 45 45 H 1.09008 * 109.58724 * 295.65974 * 29 12 11 46 46 H 1.08997 * 109.58019 * 356.72176 * 30 9 7 47 47 H 1.09000 * 109.57681 * 117.12055 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0513 -1.2248 0.2861 9 7 1.3750 -2.3594 -0.3644 10 6 0.2557 -2.3251 -1.3143 11 6 0.5864 -3.2380 -2.5013 12 6 1.0070 -4.6101 -1.9655 13 6 -0.0871 -5.6574 -1.7603 14 6 0.9077 -5.8043 -2.9139 15 1 0.5399 -5.6167 -3.9227 16 7 1.9295 -6.8476 -2.7973 17 6 2.2182 -7.6294 -3.8565 18 8 1.6309 -7.4685 -4.9091 19 6 3.2466 -8.6786 -3.7394 20 6 3.9243 -8.8687 -2.5371 21 6 4.8882 -9.8544 -2.4304 22 6 5.1957 -10.6642 -3.5054 23 6 4.5363 -10.4997 -4.7177 24 7 4.6226 -11.1374 -5.9362 25 1 5.2225 -11.8720 -6.1395 26 6 3.7376 -10.5808 -6.8146 27 6 3.0609 -9.5851 -6.2138 28 6 3.5494 -9.5049 -4.8403 29 6 2.1675 -4.5889 -0.9659 30 6 1.8055 -3.6490 0.1905 31 1 -0.4850 0.8400 0.0004 32 1 0.1080 -1.3048 -1.6682 33 1 -0.6524 -2.6770 -0.8247 34 1 1.4032 -2.8051 -3.0787 35 1 -0.2940 -3.3473 -3.1346 36 1 0.0188 -6.3370 -0.9147 37 1 -1.1094 -5.3730 -2.0097 38 1 2.3983 -6.9757 -1.9579 39 1 3.6961 -8.2445 -1.6859 40 1 5.4069 -9.9931 -1.4933 41 1 5.9512 -11.4293 -3.4037 42 1 3.6017 -10.8929 -7.8395 43 1 2.2973 -8.9662 -6.6612 44 1 2.3362 -5.5943 -0.5804 45 1 3.0695 -4.2288 -1.4607 46 1 2.6778 -3.4999 0.8268 47 1 0.9947 -4.0841 0.7748 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016845792.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:20 Heat of formation + Delta-G solvation = 74.198599 kcal Electronic energy + Delta-G solvation = -28604.013995 eV Core-core repulsion = 24753.463716 eV Total energy + Delta-G solvation = -3850.550279 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.54204 -39.82910 -38.33707 -36.89114 -35.43185 -33.15295 -32.17121 -31.52786 -30.04464 -29.60700 -29.10716 -28.15676 -24.42440 -24.28670 -22.43571 -22.32370 -21.87927 -21.16655 -20.63182 -20.31020 -18.50659 -18.07796 -17.07324 -16.52158 -16.26891 -15.91919 -15.34621 -15.03976 -14.77997 -14.39743 -14.34044 -14.14536 -13.96926 -13.48665 -13.33197 -13.17206 -13.05472 -12.91885 -12.63125 -12.23467 -11.96246 -11.89682 -11.68613 -11.58701 -11.53255 -11.27437 -10.92494 -10.69462 -10.41710 -10.29969 -9.95642 -9.93083 -9.85018 -9.64473 -9.57565 -9.29711 -8.54617 -8.41734 -8.41216 -7.96156 -6.61020 -5.76066 -3.19129 0.45238 1.28177 2.48206 2.81147 2.84594 3.15901 3.40344 3.46314 3.47917 3.77441 4.27641 4.43095 4.52293 4.54476 4.67431 4.81634 4.93260 5.04525 5.08358 5.19430 5.20437 5.29410 5.42088 5.49499 5.53755 5.62329 5.67812 5.86439 5.92629 6.08534 6.11468 6.12040 6.13528 6.16027 6.33074 6.37524 6.48148 6.52975 6.64248 6.66897 6.69333 6.74099 6.81695 6.88268 7.00065 7.21197 7.40488 7.59352 7.70891 7.82083 8.29941 8.49531 9.24747 9.88462 10.45165 11.31649 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021698 B = 0.002242 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.142253 B =12484.723618 C =12846.695353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.253 4.253 8 H 0.064 0.936 9 N -0.589 5.589 10 C 0.173 3.827 11 C -0.105 4.105 12 C -0.097 4.097 13 C -0.182 4.182 14 C 0.071 3.929 15 H 0.133 0.867 16 N -0.691 5.691 17 C 0.560 3.440 18 O -0.535 6.535 19 C -0.086 4.086 20 C -0.107 4.107 21 C -0.108 4.108 22 C -0.105 4.105 23 C 0.084 3.916 24 N -0.597 5.597 25 H 0.415 0.585 26 C 0.046 3.954 27 C -0.184 4.184 28 C -0.058 4.058 29 C -0.097 4.097 30 C 0.150 3.850 31 H 0.254 0.746 32 H 0.090 0.910 33 H 0.018 0.982 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.399 0.601 39 H 0.128 0.872 40 H 0.133 0.867 41 H 0.123 0.877 42 H 0.173 0.827 43 H 0.158 0.842 44 H 0.044 0.956 45 H 0.064 0.936 46 H 0.054 0.946 47 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.562 -24.354 -8.934 27.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.383 4.383 8 H 0.081 0.919 9 N -0.311 5.311 10 C 0.047 3.953 11 C -0.145 4.145 12 C -0.098 4.098 13 C -0.221 4.221 14 C -0.035 4.035 15 H 0.150 0.850 16 N -0.341 5.341 17 C 0.348 3.652 18 O -0.413 6.413 19 C -0.090 4.090 20 C -0.127 4.127 21 C -0.127 4.127 22 C -0.126 4.126 23 C -0.023 4.023 24 N -0.201 5.201 25 H 0.252 0.748 26 C -0.080 4.080 27 C -0.209 4.209 28 C -0.063 4.063 29 C -0.137 4.137 30 C 0.023 3.977 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.036 0.964 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.236 0.764 39 H 0.145 0.855 40 H 0.150 0.850 41 H 0.141 0.859 42 H 0.190 0.810 43 H 0.175 0.825 44 H 0.063 0.937 45 H 0.083 0.917 46 H 0.072 0.928 47 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 8.080 -24.168 -9.734 27.278 hybrid contribution 0.904 0.363 0.371 1.043 sum 8.984 -23.805 -9.363 27.112 Atomic orbital electron populations 1.70026 1.05266 1.25610 1.53643 1.25044 0.95245 0.98424 1.00892 0.86394 0.78960 0.83429 0.78128 1.21031 1.21662 1.20914 1.19137 0.92793 0.85083 1.41306 0.91875 1.43958 1.37838 1.01449 1.47881 1.20760 0.88770 0.98705 0.87058 1.21876 0.99692 0.93076 0.99829 1.21956 0.97955 0.91281 0.98624 1.23533 0.96161 1.02595 0.99814 1.21899 0.93084 0.91334 0.97175 0.84967 1.45332 1.40083 1.34368 1.14340 1.18089 0.82345 0.81056 0.83705 1.90732 1.52248 1.70234 1.28043 1.19373 0.98645 0.97314 0.93660 1.21143 0.96590 0.98651 0.96352 1.20716 0.98206 0.95564 0.98263 1.20167 1.00708 1.01343 0.90389 1.18182 0.99847 0.96513 0.87762 1.41712 1.36413 1.32779 1.09162 0.74787 1.21980 0.93387 0.96849 0.95764 1.21976 1.04743 1.01644 0.92537 1.18975 0.97267 0.95940 0.94162 1.21629 0.96297 0.98554 0.97202 1.20837 0.97357 0.87058 0.92419 0.93589 0.89211 0.96361 0.92121 0.93004 0.89093 0.88321 0.76433 0.85456 0.84954 0.85907 0.81033 0.82482 0.93718 0.91719 0.92760 0.96313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.11 11.23 55.49 0.62 -25.49 16 2 C 0.00 0.07 4.89 -17.43 -0.09 -0.01 16 3 Si 0.90 21.71 29.59 -169.99 -5.03 16.68 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.25 -6.92 9.54 -15.06 -0.14 -7.07 16 8 H 0.06 1.69 7.89 -52.48 -0.41 1.28 16 9 N -0.59 -14.62 2.94 -172.26 -0.51 -15.13 16 10 C 0.17 4.10 5.40 -3.67 -0.02 4.08 16 11 C -0.11 -2.04 5.83 -26.45 -0.15 -2.19 16 12 C -0.10 -1.62 1.94 -154.49 -0.30 -1.92 16 13 C -0.18 -2.72 9.86 -26.79 -0.26 -2.98 16 14 C 0.07 1.08 6.14 -68.01 -0.42 0.66 16 15 H 0.13 2.18 7.40 -51.93 -0.38 1.80 16 16 N -0.69 -9.45 5.30 -54.97 -0.29 -9.75 16 17 C 0.56 8.42 7.76 -12.54 -0.10 8.32 16 18 O -0.53 -9.57 14.65 5.27 0.08 -9.49 16 19 C -0.09 -1.11 5.90 -104.75 -0.62 -1.73 16 20 C -0.11 -1.08 9.53 -39.17 -0.37 -1.45 16 21 C -0.11 -0.90 9.99 -39.63 -0.40 -1.29 16 22 C -0.11 -0.87 10.06 -39.37 -0.40 -1.26 16 23 C 0.08 0.84 7.27 -83.99 -0.61 0.23 16 24 N -0.60 -4.40 6.06 -10.66 -0.06 -4.46 16 25 H 0.42 1.59 8.96 -40.82 -0.37 1.22 16 26 C 0.05 0.37 11.82 -16.76 -0.20 0.17 16 27 C -0.18 -2.17 10.24 -37.78 -0.39 -2.56 16 28 C -0.06 -0.73 6.15 -104.85 -0.64 -1.38 16 29 C -0.10 -1.63 5.37 -26.46 -0.14 -1.77 16 30 C 0.15 3.07 6.52 -3.67 -0.02 3.05 16 31 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.09 2.40 5.93 -51.93 -0.31 2.09 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.05 0.91 8.10 -51.93 -0.42 0.49 16 36 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.10 1.44 8.14 -51.92 -0.42 1.02 16 38 H 0.40 4.59 5.15 -40.82 -0.21 4.38 16 39 H 0.13 1.03 6.40 -52.49 -0.34 0.70 16 40 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 41 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 42 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.16 2.01 7.16 -52.49 -0.38 1.63 16 44 H 0.04 0.61 6.75 -51.93 -0.35 0.26 16 45 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 46 H 0.05 1.09 7.92 -51.93 -0.41 0.68 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 378.29 15.07 5.70 5.70 Total: -1.00 -33.59 378.29 -11.28 -44.86 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -6.52 Total: 6.18 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -5.27 Total: -9.11 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: -0.24 Total: -54.82 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.08 Total: -9.49 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.59 -11.28 -44.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016845792.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.063 kcal (2) G-P(sol) polarization free energy of solvation -33.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds