Wall clock time and date at job start Tue Mar 31 2020 22:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 120.00003 * 2 1 4 4 H 1.48497 * 109.47339 * 240.00621 * 3 2 1 5 5 H 1.48508 * 109.47186 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47124 * 120.00214 * 3 2 1 7 7 C 1.38811 * 119.99698 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99736 * 197.84335 * 7 2 1 9 9 N 1.36932 * 120.00331 * 17.84211 * 7 2 1 10 10 C 1.46839 * 120.38332 * 28.91110 * 9 7 2 11 11 C 1.53357 * 108.81421 * 123.07341 * 10 9 7 12 12 C 1.53188 * 108.76265 * 51.31382 * 11 10 9 13 13 C 1.52846 * 117.65384 * 90.02523 * 12 11 10 14 14 C 1.52816 * 117.71087 * 158.88140 * 12 11 10 15 15 H 1.09003 * 117.50564 * 359.86333 * 14 12 11 16 16 N 1.46500 * 117.50391 * 144.90441 * 14 12 11 17 17 C 1.34771 * 120.00091 * 205.00021 * 16 14 12 18 18 O 1.21611 * 120.00231 * 0.02562 * 17 16 14 19 19 C 1.47382 * 119.99951 * 179.97438 * 17 16 14 20 20 C 1.39316 * 120.34094 * 0.02562 * 19 17 16 21 21 C 1.38274 * 120.19394 * 179.97438 * 20 19 17 22 22 C 1.38058 * 120.89105 * 359.97438 * 21 20 19 23 23 C 1.38982 * 120.26569 * 359.97438 * 22 21 20 24 24 N 1.37795 * 133.38076 * 180.02562 * 23 22 21 25 25 H 0.97005 * 125.06893 * 0.02562 * 24 23 22 26 26 C 1.36546 * 109.85849 * 180.02562 * 24 23 22 27 27 C 1.34548 * 109.89542 * 0.02562 * 26 24 23 28 28 C 1.40665 * 119.51585 * 359.76924 * 23 22 21 29 29 C 1.53178 * 115.08098 * 304.55514 * 12 11 10 30 30 C 1.46846 * 120.38056 * 208.88920 * 9 7 2 31 31 H 0.96999 * 120.00088 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.58590 * 3.27228 * 10 9 7 33 33 H 1.09002 * 109.69043 * 242.93777 * 10 9 7 34 34 H 1.08994 * 109.58476 * 291.53456 * 11 10 9 35 35 H 1.08995 * 109.59068 * 171.09621 * 11 10 9 36 36 H 1.09000 * 117.50264 * 215.18195 * 13 12 11 37 37 H 1.09008 * 117.50674 * 0.20503 * 13 12 11 38 38 H 0.97000 * 119.99930 * 24.99661 * 16 14 12 39 39 H 1.07991 * 119.90340 * 359.97438 * 20 19 17 40 40 H 1.08005 * 119.55842 * 180.02562 * 21 20 19 41 41 H 1.07993 * 119.87203 * 180.02562 * 22 21 20 42 42 H 1.07993 * 125.05274 * 179.97438 * 26 24 23 43 43 H 1.07996 * 126.49350 * 180.02562 * 27 26 24 44 44 H 1.08993 * 109.58977 * 175.23141 * 29 12 11 45 45 H 1.09008 * 109.58724 * 295.65974 * 29 12 11 46 46 H 1.08997 * 109.58019 * 356.72176 * 30 9 7 47 47 H 1.09000 * 109.57681 * 117.12055 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0513 -1.2248 0.2861 9 7 1.3750 -2.3594 -0.3644 10 6 0.2557 -2.3251 -1.3143 11 6 0.5864 -3.2380 -2.5013 12 6 1.0070 -4.6101 -1.9655 13 6 -0.0871 -5.6574 -1.7603 14 6 0.9077 -5.8043 -2.9139 15 1 0.5399 -5.6167 -3.9227 16 7 1.9295 -6.8476 -2.7973 17 6 2.2182 -7.6294 -3.8565 18 8 1.6309 -7.4685 -4.9091 19 6 3.2466 -8.6786 -3.7394 20 6 3.9243 -8.8687 -2.5371 21 6 4.8882 -9.8544 -2.4304 22 6 5.1957 -10.6642 -3.5054 23 6 4.5363 -10.4997 -4.7177 24 7 4.6226 -11.1374 -5.9362 25 1 5.2225 -11.8720 -6.1395 26 6 3.7376 -10.5808 -6.8146 27 6 3.0609 -9.5851 -6.2138 28 6 3.5494 -9.5049 -4.8403 29 6 2.1675 -4.5889 -0.9659 30 6 1.8055 -3.6490 0.1905 31 1 -0.4850 0.8400 0.0004 32 1 0.1080 -1.3048 -1.6682 33 1 -0.6524 -2.6770 -0.8247 34 1 1.4032 -2.8051 -3.0787 35 1 -0.2940 -3.3473 -3.1346 36 1 0.0188 -6.3370 -0.9147 37 1 -1.1094 -5.3730 -2.0097 38 1 2.3983 -6.9757 -1.9579 39 1 3.6961 -8.2445 -1.6859 40 1 5.4069 -9.9931 -1.4933 41 1 5.9512 -11.4293 -3.4037 42 1 3.6017 -10.8929 -7.8395 43 1 2.2973 -8.9662 -6.6612 44 1 2.3362 -5.5943 -0.5804 45 1 3.0695 -4.2288 -1.4607 46 1 2.6778 -3.4999 0.8268 47 1 0.9947 -4.0841 0.7748 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016845792.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:19 Heat of formation + Delta-G solvation = 53.847052 kcal Electronic energy + Delta-G solvation = -28604.896504 eV Core-core repulsion = 24753.463716 eV Total energy + Delta-G solvation = -3851.432788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.25541 -41.01735 -39.65165 -37.64791 -37.10183 -34.52186 -33.44716 -32.79560 -31.66159 -30.49139 -29.96346 -29.62499 -26.23050 -25.26418 -24.04825 -23.34309 -22.75623 -22.48582 -21.65076 -21.41276 -19.81816 -19.28638 -18.27671 -17.87157 -17.20559 -17.03026 -16.70443 -16.05786 -16.01709 -15.67305 -15.42305 -15.21683 -15.15936 -15.06246 -14.89533 -14.60116 -14.14008 -13.92841 -13.77843 -13.54909 -13.29702 -13.09003 -12.87864 -12.65631 -12.62589 -12.55359 -12.46881 -12.41796 -12.26850 -12.01437 -11.77308 -11.37974 -11.25699 -10.96501 -10.70838 -10.67127 -10.45735 -9.67750 -9.23387 -8.69150 -8.60078 -7.84641 -5.30628 -0.32038 0.59314 1.46961 1.50002 1.56310 1.67851 1.94053 2.04552 2.26263 2.52806 2.87236 3.06604 3.30171 3.61007 3.67375 3.81125 3.86303 3.92886 3.99734 4.04232 4.13923 4.20711 4.29477 4.40790 4.53918 4.61319 4.66457 4.74246 4.84086 4.86203 4.91603 4.92889 4.98155 5.04198 5.09235 5.12706 5.17948 5.32308 5.39253 5.39941 5.45990 5.51897 5.57582 5.67078 5.69262 5.75261 5.78723 6.11756 6.42771 6.54183 6.73135 7.17895 7.22011 7.90549 8.41635 9.20387 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021698 B = 0.002242 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.142253 B =12484.723618 C =12846.695353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.051 4.051 3 Si 0.964 3.036 4 H -0.281 1.281 5 H -0.295 1.295 6 H -0.274 1.274 7 C -0.262 4.262 8 H 0.065 0.935 9 N -0.608 5.608 10 C 0.182 3.818 11 C -0.094 4.094 12 C -0.113 4.113 13 C -0.167 4.167 14 C 0.083 3.917 15 H 0.117 0.883 16 N -0.682 5.682 17 C 0.556 3.444 18 O -0.576 6.576 19 C -0.126 4.126 20 C -0.100 4.100 21 C -0.114 4.114 22 C -0.090 4.090 23 C 0.068 3.932 24 N -0.581 5.581 25 H 0.435 0.565 26 C 0.079 3.921 27 C -0.241 4.241 28 C -0.089 4.089 29 C -0.083 4.083 30 C 0.146 3.854 31 H 0.249 0.751 32 H 0.053 0.947 33 H 0.001 0.999 34 H 0.046 0.954 35 H 0.065 0.935 36 H 0.111 0.889 37 H 0.101 0.899 38 H 0.411 0.589 39 H 0.145 0.855 40 H 0.166 0.834 41 H 0.159 0.841 42 H 0.212 0.788 43 H 0.131 0.869 44 H 0.085 0.915 45 H 0.055 0.945 46 H 0.056 0.944 47 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.171 -27.530 -8.479 30.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.246 4.246 3 Si 0.792 3.208 4 H -0.207 1.207 5 H -0.221 1.221 6 H -0.199 1.199 7 C -0.393 4.393 8 H 0.083 0.917 9 N -0.331 5.331 10 C 0.056 3.944 11 C -0.134 4.134 12 C -0.115 4.115 13 C -0.206 4.206 14 C -0.023 4.023 15 H 0.135 0.865 16 N -0.333 5.333 17 C 0.346 3.654 18 O -0.457 6.457 19 C -0.130 4.130 20 C -0.120 4.120 21 C -0.133 4.133 22 C -0.111 4.111 23 C -0.039 4.039 24 N -0.186 5.186 25 H 0.276 0.724 26 C -0.048 4.048 27 C -0.266 4.266 28 C -0.095 4.095 29 C -0.122 4.122 30 C 0.020 3.980 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.019 0.981 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.129 0.871 37 H 0.119 0.881 38 H 0.250 0.750 39 H 0.162 0.838 40 H 0.184 0.816 41 H 0.176 0.824 42 H 0.229 0.771 43 H 0.149 0.851 44 H 0.103 0.897 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 10.742 -27.397 -9.247 30.846 hybrid contribution 0.140 1.233 0.207 1.258 sum 10.882 -26.164 -9.040 29.744 Atomic orbital electron populations 1.70177 1.06638 1.25857 1.55245 1.25785 0.95996 1.01471 1.01392 0.85395 0.77637 0.79453 0.78298 1.20732 1.22095 1.19915 1.19472 0.93081 0.86342 1.40378 0.91704 1.44224 1.37862 1.02449 1.48598 1.20512 0.88170 0.97547 0.88215 1.21635 0.99822 0.93921 0.97975 1.21812 0.99409 0.90370 0.99869 1.23618 0.95765 1.01207 0.99990 1.21622 0.93490 0.90693 0.96480 0.86519 1.45204 1.39717 1.33607 1.14734 1.18578 0.82345 0.81305 0.83127 1.90704 1.53891 1.71504 1.29573 1.19341 1.00004 0.98163 0.95468 1.21435 0.96032 0.98912 0.95585 1.21140 0.97725 0.94748 0.99723 1.20647 1.00026 1.01152 0.89253 1.18424 0.99798 0.96449 0.89243 1.41730 1.36034 1.32659 1.08167 0.72417 1.22449 0.91088 0.94444 0.96854 1.21936 1.06858 1.04304 0.93533 1.19338 0.98538 0.97094 0.94486 1.21461 0.95636 0.99610 0.95528 1.21005 0.97257 0.85871 0.93850 0.94148 0.92849 0.98128 0.93512 0.91622 0.87086 0.88080 0.74993 0.83769 0.81622 0.82372 0.77141 0.85069 0.89669 0.92583 0.92524 0.96292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.88 11.23 21.65 0.24 -55.63 16 2 C -0.05 -2.88 4.89 84.86 0.41 -2.47 16 3 Si 0.96 45.44 29.59 68.60 2.03 47.47 16 4 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 5 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.26 -14.55 9.54 84.03 0.80 -13.75 16 8 H 0.07 3.49 7.89 -2.91 -0.02 3.47 16 9 N -0.61 -30.68 2.94 -698.90 -2.05 -32.73 16 10 C 0.18 8.92 5.40 86.43 0.47 9.38 16 11 C -0.09 -3.72 5.83 30.78 0.18 -3.54 16 12 C -0.11 -3.71 1.94 -52.17 -0.10 -3.82 16 13 C -0.17 -4.72 9.86 30.55 0.30 -4.42 16 14 C 0.08 2.50 6.14 44.94 0.28 2.77 16 15 H 0.12 3.93 7.40 -2.39 -0.02 3.92 16 16 N -0.68 -18.02 5.30 -446.09 -2.36 -20.38 16 17 C 0.56 17.04 7.76 86.65 0.67 17.71 16 18 O -0.58 -21.82 14.65 -4.07 -0.06 -21.88 16 19 C -0.13 -3.23 5.90 -19.95 -0.12 -3.34 16 20 C -0.10 -1.78 9.53 22.54 0.21 -1.57 16 21 C -0.11 -1.47 9.99 22.24 0.22 -1.25 16 22 C -0.09 -1.14 10.06 22.41 0.23 -0.92 16 23 C 0.07 1.21 7.27 38.98 0.28 1.49 16 24 N -0.58 -6.91 6.06 -187.64 -1.14 -8.05 16 25 H 0.44 1.64 8.96 -92.70 -0.83 0.81 16 26 C 0.08 1.14 11.82 83.11 0.98 2.13 16 27 C -0.24 -5.90 10.24 23.44 0.24 -5.66 16 28 C -0.09 -2.25 6.15 -20.01 -0.12 -2.37 16 29 C -0.08 -2.65 5.37 30.77 0.17 -2.48 16 30 C 0.15 5.85 6.52 86.43 0.56 6.42 16 31 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 32 H 0.05 2.99 5.93 -2.39 -0.01 2.98 16 33 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 34 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.07 2.36 8.10 -2.39 -0.02 2.34 16 36 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.10 2.83 8.14 -2.38 -0.02 2.81 16 38 H 0.41 8.51 5.15 -92.71 -0.48 8.03 16 39 H 0.14 1.90 6.40 -2.91 -0.02 1.88 16 40 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 41 H 0.16 0.85 8.06 -2.91 -0.02 0.82 16 42 H 0.21 1.17 8.06 -2.91 -0.02 1.14 16 43 H 0.13 3.76 7.16 -2.91 -0.02 3.74 16 44 H 0.08 2.02 6.75 -2.39 -0.02 2.00 16 45 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 46 H 0.06 2.21 7.92 -2.39 -0.02 2.19 16 47 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -78.01 378.29 2.03 -75.97 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -0.29 Total: 20.91 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 5.67 Total: -5.68 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -5.31 Total: -116.80 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.06 Total: -21.88 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -78.01 2.03 -75.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016845792.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.821 kcal (2) G-P(sol) polarization free energy of solvation -78.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds