Wall clock time and date at job start Tue Mar 31 2020 22:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86802 * 119.99568 * 2 1 4 4 H 1.48497 * 109.47229 * 239.99990 * 3 2 1 5 5 H 1.48497 * 109.47333 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46871 * 119.99899 * 3 2 1 7 7 C 1.38803 * 119.99963 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99649 * 197.85146 * 7 2 1 9 9 N 1.36935 * 120.00771 * 17.85216 * 7 2 1 10 10 C 1.46844 * 120.38648 * 208.91038 * 9 7 2 11 11 C 1.53347 * 108.80928 * 236.87977 * 10 9 7 12 12 C 1.53191 * 108.77075 * 308.67963 * 11 10 9 13 13 C 1.52844 * 117.66027 * 269.97855 * 12 11 10 14 14 C 1.52811 * 117.71673 * 201.11908 * 12 11 10 15 15 H 1.08999 * 117.50338 * 0.11285 * 14 12 11 16 16 N 1.46499 * 117.50063 * 215.10392 * 14 12 11 17 17 C 1.34777 * 120.00085 * 155.00290 * 16 14 12 18 18 O 1.21615 * 120.00060 * 359.97438 * 17 16 14 19 19 C 1.47372 * 120.00254 * 180.02562 * 17 16 14 20 20 C 1.39320 * 120.34186 * 359.97002 * 19 17 16 21 21 C 1.38277 * 120.19984 * 180.02562 * 20 19 17 22 22 C 1.38057 * 120.88284 * 359.97438 * 21 20 19 23 23 C 1.38983 * 120.27114 * 0.04144 * 22 21 20 24 24 N 1.37802 * 133.37277 * 180.31989 * 23 22 21 25 25 H 0.96992 * 125.07464 * 359.90101 * 24 23 22 26 26 C 1.36544 * 109.84688 * 180.02562 * 24 23 22 27 27 C 1.34553 * 109.90350 * 359.59178 * 26 24 23 28 28 C 1.40663 * 119.51515 * 359.96096 * 23 22 21 29 29 C 1.53189 * 115.06952 * 55.44868 * 12 11 10 30 30 C 1.46844 * 120.37871 * 28.88246 * 9 7 2 31 31 H 0.96997 * 120.00166 * 359.97438 * 1 2 3 32 32 H 1.09005 * 109.58258 * 117.08332 * 10 9 7 33 33 H 1.08993 * 109.58077 * 356.67764 * 10 9 7 34 34 H 1.09004 * 109.59030 * 188.90044 * 11 10 9 35 35 H 1.08998 * 109.59178 * 68.46598 * 11 10 9 36 36 H 1.09003 * 117.50127 * 144.80779 * 13 12 11 37 37 H 1.08998 * 117.50472 * 359.76115 * 13 12 11 38 38 H 0.96999 * 119.99886 * 334.99525 * 16 14 12 39 39 H 1.08004 * 119.90151 * 0.05477 * 20 19 17 40 40 H 1.07994 * 119.55934 * 180.02562 * 21 20 19 41 41 H 1.08004 * 119.86524 * 180.02562 * 22 21 20 42 42 H 1.08005 * 125.04872 * 179.85757 * 26 24 23 43 43 H 1.07996 * 126.49507 * 180.20455 * 27 26 24 44 44 H 1.09000 * 109.58398 * 64.34863 * 29 12 11 45 45 H 1.08996 * 109.58260 * 184.76899 * 29 12 11 46 46 H 1.08998 * 109.58149 * 242.92422 * 30 9 7 47 47 H 1.09001 * 109.57989 * 3.32427 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0514 -1.2247 0.2862 9 7 1.3752 -2.3593 -0.3646 10 6 1.8054 -3.6489 0.1906 11 6 2.1669 -4.5891 -0.9657 12 6 1.0060 -4.6104 -1.9650 13 6 -0.0883 -5.6575 -1.7592 14 6 0.9061 -5.8048 -2.9130 15 1 1.6665 -6.5809 -2.8267 16 7 0.4115 -5.5529 -4.2688 17 6 0.7534 -6.3810 -5.2756 18 8 1.4730 -7.3371 -5.0588 19 6 0.2563 -6.1273 -6.6396 20 6 -0.5681 -5.0339 -6.8961 21 6 -1.0333 -4.7989 -8.1769 22 6 -0.6920 -5.6369 -9.2196 23 6 0.1284 -6.7361 -8.9954 24 7 0.6331 -7.7230 -9.8140 25 1 0.4661 -7.7964 -10.7667 26 6 1.4010 -8.5837 -9.0834 27 6 1.4301 -8.1920 -7.7965 28 6 0.6096 -6.9884 -7.6979 29 6 0.5856 -3.2383 -2.5010 30 6 0.2557 -2.3250 -1.3142 31 1 -0.4850 0.8400 0.0004 32 1 0.9945 -4.0838 0.7751 33 1 2.6778 -3.5000 0.8267 34 1 2.3355 -5.5946 -0.5801 35 1 3.0687 -4.2294 -1.4610 36 1 -1.1105 -5.3731 -2.0088 37 1 0.0178 -6.3369 -0.9135 38 1 -0.1623 -4.7901 -4.4418 39 1 -0.8443 -4.3675 -6.0923 40 1 -1.6714 -3.9480 -8.3642 41 1 -1.0644 -5.4377 -10.2137 42 1 1.9128 -9.4480 -9.4803 43 1 1.9590 -8.6768 -6.9893 44 1 1.4023 -2.8059 -3.0790 45 1 -0.2950 -3.3475 -3.1340 46 1 -0.6511 -2.6777 -0.8228 47 1 0.1083 -1.3047 -1.6684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016845793.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:24 Heat of formation + Delta-G solvation = 73.919749 kcal Electronic energy + Delta-G solvation = -28685.044154 eV Core-core repulsion = 24834.481784 eV Total energy + Delta-G solvation = -3850.562371 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.51436 -39.81033 -38.32764 -36.85965 -35.42848 -33.16784 -32.15771 -31.42351 -30.07645 -29.63415 -29.09198 -28.11693 -24.41055 -24.27254 -22.43335 -22.30936 -21.85201 -21.16227 -20.61580 -20.28285 -18.48728 -18.07042 -17.03475 -16.56588 -16.24882 -15.82527 -15.31972 -15.01635 -14.80558 -14.39472 -14.30466 -14.11903 -13.99012 -13.54752 -13.33732 -13.14780 -12.96849 -12.89069 -12.56997 -12.26395 -11.92298 -11.86910 -11.65976 -11.64549 -11.45647 -11.31544 -10.92440 -10.69718 -10.48305 -10.26423 -9.96208 -9.92848 -9.78114 -9.67508 -9.54560 -9.30221 -8.51453 -8.44065 -8.39733 -7.93500 -6.61397 -5.77098 -3.19772 0.48297 1.31728 2.50301 2.83589 2.87071 3.18724 3.39730 3.45293 3.47234 3.80280 4.28102 4.46172 4.51809 4.57025 4.71589 4.85177 4.96348 5.05666 5.11289 5.19909 5.20919 5.32086 5.41286 5.53236 5.55666 5.65022 5.67483 5.88931 5.93823 6.10041 6.11899 6.15247 6.16971 6.18899 6.32127 6.40336 6.49168 6.54981 6.60859 6.65233 6.70629 6.75407 6.84636 6.87170 7.03512 7.23650 7.36642 7.62152 7.66963 7.81573 8.31982 8.48687 9.24050 9.87788 10.44611 11.30705 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017110 B = 0.002457 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.098246 B =11393.766760 C =12303.948924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.252 4.252 8 H 0.064 0.936 9 N -0.590 5.590 10 C 0.149 3.851 11 C -0.098 4.098 12 C -0.097 4.097 13 C -0.183 4.183 14 C 0.071 3.929 15 H 0.132 0.868 16 N -0.691 5.691 17 C 0.561 3.439 18 O -0.537 6.537 19 C -0.087 4.087 20 C -0.106 4.106 21 C -0.108 4.108 22 C -0.105 4.105 23 C 0.083 3.917 24 N -0.597 5.597 25 H 0.415 0.585 26 C 0.046 3.954 27 C -0.184 4.184 28 C -0.058 4.058 29 C -0.105 4.105 30 C 0.174 3.826 31 H 0.254 0.746 32 H 0.019 0.981 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.401 0.599 39 H 0.129 0.871 40 H 0.133 0.867 41 H 0.123 0.877 42 H 0.172 0.828 43 H 0.157 0.843 44 H 0.061 0.939 45 H 0.043 0.957 46 H 0.018 0.982 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.542 -14.844 -19.699 24.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.382 4.382 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.023 3.977 11 C -0.137 4.137 12 C -0.099 4.099 13 C -0.221 4.221 14 C -0.035 4.035 15 H 0.149 0.851 16 N -0.341 5.341 17 C 0.349 3.651 18 O -0.415 6.415 19 C -0.091 4.091 20 C -0.126 4.126 21 C -0.127 4.127 22 C -0.126 4.126 23 C -0.023 4.023 24 N -0.201 5.201 25 H 0.252 0.748 26 C -0.080 4.080 27 C -0.209 4.209 28 C -0.063 4.063 29 C -0.144 4.144 30 C 0.048 3.952 31 H 0.064 0.936 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.237 0.763 39 H 0.146 0.854 40 H 0.151 0.849 41 H 0.141 0.859 42 H 0.189 0.811 43 H 0.175 0.825 44 H 0.080 0.920 45 H 0.061 0.939 46 H 0.036 0.964 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.133 -15.414 -19.635 25.054 hybrid contribution -0.073 1.208 -0.573 1.339 sum -2.206 -14.207 -20.209 24.801 Atomic orbital electron populations 1.70027 1.05251 1.25564 1.53836 1.25037 0.95249 0.98407 1.00954 0.86393 0.78957 0.83411 0.78163 1.21043 1.21679 1.20894 1.19157 0.92839 0.85073 1.41099 0.91836 1.43964 1.37819 1.01554 1.47830 1.20859 0.97410 0.86901 0.92557 1.21687 0.95917 0.99272 0.96830 1.21956 0.98237 0.91169 0.98533 1.23530 0.95895 1.03015 0.99675 1.21863 1.00946 1.02393 0.78257 0.85053 1.45337 1.51586 1.29643 1.07508 1.18085 0.80380 0.82395 0.84251 1.90723 1.37161 1.29414 1.84176 1.19361 1.00689 0.96574 0.92437 1.21175 0.97376 0.96532 0.97553 1.20729 1.00625 0.99465 0.91871 1.20172 0.99020 0.93573 0.99840 1.18180 1.00546 0.93150 0.90453 1.41706 1.44463 1.23620 1.10291 0.74802 1.21973 0.97759 0.96349 0.91944 1.21966 1.04959 0.97706 0.96291 1.18967 0.99593 0.96543 0.91241 1.21811 0.99074 0.93641 0.99869 1.20746 0.88858 0.98591 0.87044 0.93630 0.96258 0.92690 0.92852 0.91833 0.88944 0.88471 0.76267 0.85367 0.84905 0.85905 0.81064 0.82513 0.92020 0.93871 0.96409 0.89229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.90 11.23 55.49 0.62 -25.28 16 2 C 0.00 0.06 4.88 -17.43 -0.09 -0.03 16 3 Si 0.90 21.59 29.59 -169.99 -5.03 16.56 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.25 -6.88 9.54 -15.06 -0.14 -7.02 16 8 H 0.06 1.71 7.89 -52.48 -0.41 1.30 16 9 N -0.59 -14.62 2.94 -172.26 -0.51 -15.12 16 10 C 0.15 3.12 6.52 -3.67 -0.02 3.10 16 11 C -0.10 -1.72 5.83 -26.45 -0.15 -1.87 16 12 C -0.10 -1.64 1.94 -154.49 -0.30 -1.94 16 13 C -0.18 -2.72 9.86 -26.80 -0.26 -2.98 16 14 C 0.07 1.08 6.14 -68.01 -0.42 0.67 16 15 H 0.13 2.11 7.40 -51.93 -0.38 1.73 16 16 N -0.69 -9.78 5.30 -54.98 -0.29 -10.07 16 17 C 0.56 8.60 7.76 -12.54 -0.10 8.50 16 18 O -0.54 -9.63 14.65 5.26 0.08 -9.55 16 19 C -0.09 -1.16 5.89 -104.75 -0.62 -1.78 16 20 C -0.11 -1.15 9.53 -39.16 -0.37 -1.52 16 21 C -0.11 -0.97 9.99 -39.63 -0.40 -1.36 16 22 C -0.11 -0.92 10.05 -39.37 -0.40 -1.31 16 23 C 0.08 0.87 7.27 -83.99 -0.61 0.26 16 24 N -0.60 -4.57 6.06 -10.66 -0.06 -4.63 16 25 H 0.42 1.70 8.96 -40.82 -0.37 1.34 16 26 C 0.05 0.38 11.82 -16.76 -0.20 0.18 16 27 C -0.18 -2.21 10.24 -37.78 -0.39 -2.59 16 28 C -0.06 -0.75 6.15 -104.85 -0.64 -1.40 16 29 C -0.10 -1.93 5.37 -26.45 -0.14 -2.07 16 30 C 0.17 4.03 5.40 -3.68 -0.02 4.01 16 31 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 1.13 7.92 -51.93 -0.41 0.72 16 34 H 0.05 0.82 8.10 -51.93 -0.42 0.39 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 38 H 0.40 4.98 5.15 -40.82 -0.21 4.77 16 39 H 0.13 1.17 6.40 -52.48 -0.34 0.83 16 40 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 41 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 42 H 0.17 0.76 8.06 -52.48 -0.42 0.34 16 43 H 0.16 2.01 7.16 -52.49 -0.38 1.64 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.04 0.68 6.75 -51.93 -0.35 0.33 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.09 2.33 5.93 -51.93 -0.31 2.03 16 LS Contribution 378.29 15.07 5.70 5.70 Total: -1.00 -33.34 378.29 -11.28 -44.61 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -6.52 Total: 6.93 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -5.27 Total: -9.15 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -0.24 Total: -55.11 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.08 Total: -9.55 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.34 -11.28 -44.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016845793.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.534 kcal (2) G-P(sol) polarization free energy of solvation -33.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds