Wall clock time and date at job start Tue Mar 31 2020 22:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86802 * 119.99568 * 2 1 4 4 H 1.48497 * 109.47229 * 239.99990 * 3 2 1 5 5 H 1.48497 * 109.47333 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46871 * 119.99899 * 3 2 1 7 7 C 1.38803 * 119.99963 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99649 * 197.85146 * 7 2 1 9 9 N 1.36935 * 120.00771 * 17.85216 * 7 2 1 10 10 C 1.46844 * 120.38648 * 208.91038 * 9 7 2 11 11 C 1.53347 * 108.80928 * 236.87977 * 10 9 7 12 12 C 1.53191 * 108.77075 * 308.67963 * 11 10 9 13 13 C 1.52844 * 117.66027 * 269.97855 * 12 11 10 14 14 C 1.52811 * 117.71673 * 201.11908 * 12 11 10 15 15 H 1.08999 * 117.50338 * 0.11285 * 14 12 11 16 16 N 1.46499 * 117.50063 * 215.10392 * 14 12 11 17 17 C 1.34777 * 120.00085 * 155.00290 * 16 14 12 18 18 O 1.21615 * 120.00060 * 359.97438 * 17 16 14 19 19 C 1.47372 * 120.00254 * 180.02562 * 17 16 14 20 20 C 1.39320 * 120.34186 * 359.97002 * 19 17 16 21 21 C 1.38277 * 120.19984 * 180.02562 * 20 19 17 22 22 C 1.38057 * 120.88284 * 359.97438 * 21 20 19 23 23 C 1.38983 * 120.27114 * 0.04144 * 22 21 20 24 24 N 1.37802 * 133.37277 * 180.31989 * 23 22 21 25 25 H 0.96992 * 125.07464 * 359.90101 * 24 23 22 26 26 C 1.36544 * 109.84688 * 180.02562 * 24 23 22 27 27 C 1.34553 * 109.90350 * 359.59178 * 26 24 23 28 28 C 1.40663 * 119.51515 * 359.96096 * 23 22 21 29 29 C 1.53189 * 115.06952 * 55.44868 * 12 11 10 30 30 C 1.46844 * 120.37871 * 28.88246 * 9 7 2 31 31 H 0.96997 * 120.00166 * 359.97438 * 1 2 3 32 32 H 1.09005 * 109.58258 * 117.08332 * 10 9 7 33 33 H 1.08993 * 109.58077 * 356.67764 * 10 9 7 34 34 H 1.09004 * 109.59030 * 188.90044 * 11 10 9 35 35 H 1.08998 * 109.59178 * 68.46598 * 11 10 9 36 36 H 1.09003 * 117.50127 * 144.80779 * 13 12 11 37 37 H 1.08998 * 117.50472 * 359.76115 * 13 12 11 38 38 H 0.96999 * 119.99886 * 334.99525 * 16 14 12 39 39 H 1.08004 * 119.90151 * 0.05477 * 20 19 17 40 40 H 1.07994 * 119.55934 * 180.02562 * 21 20 19 41 41 H 1.08004 * 119.86524 * 180.02562 * 22 21 20 42 42 H 1.08005 * 125.04872 * 179.85757 * 26 24 23 43 43 H 1.07996 * 126.49507 * 180.20455 * 27 26 24 44 44 H 1.09000 * 109.58398 * 64.34863 * 29 12 11 45 45 H 1.08996 * 109.58260 * 184.76899 * 29 12 11 46 46 H 1.08998 * 109.58149 * 242.92422 * 30 9 7 47 47 H 1.09001 * 109.57989 * 3.32427 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0514 -1.2247 0.2862 9 7 1.3752 -2.3593 -0.3646 10 6 1.8054 -3.6489 0.1906 11 6 2.1669 -4.5891 -0.9657 12 6 1.0060 -4.6104 -1.9650 13 6 -0.0883 -5.6575 -1.7592 14 6 0.9061 -5.8048 -2.9130 15 1 1.6665 -6.5809 -2.8267 16 7 0.4115 -5.5529 -4.2688 17 6 0.7534 -6.3810 -5.2756 18 8 1.4730 -7.3371 -5.0588 19 6 0.2563 -6.1273 -6.6396 20 6 -0.5681 -5.0339 -6.8961 21 6 -1.0333 -4.7989 -8.1769 22 6 -0.6920 -5.6369 -9.2196 23 6 0.1284 -6.7361 -8.9954 24 7 0.6331 -7.7230 -9.8140 25 1 0.4661 -7.7964 -10.7667 26 6 1.4010 -8.5837 -9.0834 27 6 1.4301 -8.1920 -7.7965 28 6 0.6096 -6.9884 -7.6979 29 6 0.5856 -3.2383 -2.5010 30 6 0.2557 -2.3250 -1.3142 31 1 -0.4850 0.8400 0.0004 32 1 0.9945 -4.0838 0.7751 33 1 2.6778 -3.5000 0.8267 34 1 2.3355 -5.5946 -0.5801 35 1 3.0687 -4.2294 -1.4610 36 1 -1.1105 -5.3731 -2.0088 37 1 0.0178 -6.3369 -0.9135 38 1 -0.1623 -4.7901 -4.4418 39 1 -0.8443 -4.3675 -6.0923 40 1 -1.6714 -3.9480 -8.3642 41 1 -1.0644 -5.4377 -10.2137 42 1 1.9128 -9.4480 -9.4803 43 1 1.9590 -8.6768 -6.9893 44 1 1.4023 -2.8059 -3.0790 45 1 -0.2950 -3.3475 -3.1340 46 1 -0.6511 -2.6777 -0.8228 47 1 0.1083 -1.3047 -1.6684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016845793.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:23 Heat of formation + Delta-G solvation = 54.038849 kcal Electronic energy + Delta-G solvation = -28685.906255 eV Core-core repulsion = 24834.481784 eV Total energy + Delta-G solvation = -3851.424471 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.26410 -41.01513 -39.65182 -37.66061 -37.09550 -34.56984 -33.38112 -32.76158 -31.74038 -30.51570 -29.95981 -29.60334 -26.22802 -25.27186 -24.04173 -23.35551 -22.76547 -22.49582 -21.63120 -21.40398 -19.83857 -19.27397 -18.28516 -17.89517 -17.13043 -17.02788 -16.78073 -16.06642 -16.01972 -15.65869 -15.45560 -15.23958 -15.17298 -15.06633 -14.87356 -14.56904 -14.14128 -13.93001 -13.74472 -13.56005 -13.32793 -13.04879 -12.92091 -12.67212 -12.64411 -12.55092 -12.46911 -12.42475 -12.31538 -11.98857 -11.76876 -11.36761 -11.25050 -10.95294 -10.71824 -10.66816 -10.46573 -9.67822 -9.24848 -8.69766 -8.59669 -7.84678 -5.30513 -0.33447 0.57360 1.47819 1.49843 1.56756 1.67532 1.93024 2.05157 2.25571 2.53093 2.86666 3.05972 3.29830 3.60418 3.67104 3.82012 3.86073 3.91738 3.99874 4.02919 4.14254 4.18956 4.28372 4.39322 4.53991 4.61766 4.66154 4.72376 4.84116 4.86372 4.90395 4.91782 4.97810 5.01878 5.09524 5.11940 5.22775 5.31534 5.37994 5.38735 5.44696 5.52316 5.56048 5.67212 5.67720 5.74579 5.79920 6.10635 6.43021 6.51897 6.72710 7.18473 7.19766 7.90444 8.41594 9.20259 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017110 B = 0.002457 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.098246 B =11393.766760 C =12303.948924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.048 4.048 3 Si 0.964 3.036 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.264 4.264 8 H 0.062 0.938 9 N -0.609 5.609 10 C 0.146 3.854 11 C -0.087 4.087 12 C -0.115 4.115 13 C -0.168 4.168 14 C 0.084 3.916 15 H 0.125 0.875 16 N -0.686 5.686 17 C 0.558 3.442 18 O -0.573 6.573 19 C -0.126 4.126 20 C -0.103 4.103 21 C -0.116 4.116 22 C -0.090 4.090 23 C 0.068 3.932 24 N -0.581 5.581 25 H 0.435 0.565 26 C 0.080 3.920 27 C -0.240 4.240 28 C -0.087 4.087 29 C -0.089 4.089 30 C 0.181 3.819 31 H 0.250 0.750 32 H 0.019 0.981 33 H 0.052 0.948 34 H 0.081 0.919 35 H 0.052 0.948 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.409 0.591 39 H 0.139 0.861 40 H 0.163 0.837 41 H 0.159 0.841 42 H 0.214 0.786 43 H 0.134 0.866 44 H 0.048 0.952 45 H 0.070 0.930 46 H 0.001 0.999 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.079 -15.481 -22.469 27.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.244 4.244 3 Si 0.792 3.208 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.395 4.395 8 H 0.079 0.921 9 N -0.332 5.332 10 C 0.021 3.979 11 C -0.126 4.126 12 C -0.116 4.116 13 C -0.206 4.206 14 C -0.022 4.022 15 H 0.143 0.857 16 N -0.336 5.336 17 C 0.348 3.652 18 O -0.454 6.454 19 C -0.129 4.129 20 C -0.123 4.123 21 C -0.135 4.135 22 C -0.110 4.110 23 C -0.039 4.039 24 N -0.186 5.186 25 H 0.276 0.724 26 C -0.047 4.047 27 C -0.265 4.265 28 C -0.093 4.093 29 C -0.128 4.128 30 C 0.055 3.945 31 H 0.060 0.940 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.119 0.881 37 H 0.129 0.871 38 H 0.247 0.753 39 H 0.157 0.843 40 H 0.181 0.819 41 H 0.177 0.823 42 H 0.230 0.770 43 H 0.152 0.848 44 H 0.067 0.933 45 H 0.089 0.911 46 H 0.019 0.981 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.680 -16.053 -22.436 27.718 hybrid contribution 0.086 1.339 0.223 1.361 sum -2.594 -14.714 -22.213 26.770 Atomic orbital electron populations 1.70169 1.06513 1.25902 1.55140 1.25749 0.96019 1.01316 1.01275 0.85402 0.77668 0.79505 0.78240 1.20614 1.21836 1.20280 1.19451 0.93014 0.86400 1.40597 0.92075 1.44235 1.38009 1.02239 1.48684 1.20977 0.97107 0.86009 0.93817 1.21528 0.95753 0.99671 0.95655 1.21824 0.99265 0.90841 0.99696 1.23617 0.95727 1.01573 0.99721 1.21688 1.01003 1.00676 0.78882 0.85740 1.45277 1.51500 1.29859 1.06968 1.18527 0.79689 0.81786 0.85224 1.90692 1.38912 1.30953 1.84834 1.19340 1.03414 0.98759 0.91435 1.21419 0.96273 0.95561 0.99003 1.21116 1.00840 1.00491 0.91049 1.20630 0.96998 0.92000 1.01384 1.18403 1.01246 0.94354 0.89886 1.41729 1.43270 1.22454 1.11109 0.72406 1.22475 0.95484 0.96167 0.90600 1.21938 1.07617 0.99209 0.97725 1.19333 1.00366 0.97067 0.92578 1.21544 0.99757 0.93547 0.97961 1.20551 0.88000 0.97752 0.88220 0.94049 0.96332 0.92948 0.90066 0.92892 0.88112 0.87085 0.75288 0.84288 0.81904 0.82336 0.76988 0.84850 0.93298 0.91144 0.98138 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.80 11.23 21.65 0.24 -54.56 16 2 C -0.05 -2.69 4.88 84.86 0.41 -2.27 16 3 Si 0.96 45.04 29.59 68.60 2.03 47.07 16 4 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.26 -14.70 9.54 84.03 0.80 -13.90 16 8 H 0.06 3.35 7.89 -2.91 -0.02 3.33 16 9 N -0.61 -30.78 2.94 -698.92 -2.05 -32.83 16 10 C 0.15 6.15 6.52 86.43 0.56 6.72 16 11 C -0.09 -3.01 5.83 30.77 0.18 -2.83 16 12 C -0.11 -3.77 1.94 -52.17 -0.10 -3.87 16 13 C -0.17 -4.73 9.86 30.55 0.30 -4.43 16 14 C 0.08 2.49 6.14 44.94 0.28 2.77 16 15 H 0.12 3.97 7.40 -2.39 -0.02 3.95 16 16 N -0.69 -19.25 5.30 -446.11 -2.36 -21.61 16 17 C 0.56 17.58 7.76 86.65 0.67 18.25 16 18 O -0.57 -21.60 14.65 -4.08 -0.06 -21.66 16 19 C -0.13 -3.40 5.89 -19.95 -0.12 -3.52 16 20 C -0.10 -2.09 9.53 22.54 0.21 -1.88 16 21 C -0.12 -1.76 9.99 22.24 0.22 -1.54 16 22 C -0.09 -1.27 10.05 22.41 0.23 -1.05 16 23 C 0.07 1.28 7.27 38.98 0.28 1.56 16 24 N -0.58 -7.19 6.06 -187.63 -1.14 -8.33 16 25 H 0.44 1.85 8.96 -92.71 -0.83 1.02 16 26 C 0.08 1.17 11.82 83.12 0.98 2.15 16 27 C -0.24 -5.88 10.24 23.44 0.24 -5.64 16 28 C -0.09 -2.29 6.15 -20.01 -0.12 -2.41 16 29 C -0.09 -3.27 5.37 30.77 0.17 -3.10 16 30 C 0.18 8.58 5.40 86.43 0.47 9.05 16 31 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 32 H 0.02 0.78 8.14 -2.38 -0.02 0.77 16 33 H 0.05 2.18 7.92 -2.39 -0.02 2.16 16 34 H 0.08 2.35 8.10 -2.38 -0.02 2.33 16 35 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 38 H 0.41 9.82 5.15 -92.71 -0.48 9.35 16 39 H 0.14 2.35 6.40 -2.91 -0.02 2.33 16 40 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 41 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16 42 H 0.21 1.14 8.06 -2.91 -0.02 1.12 16 43 H 0.13 3.77 7.16 -2.91 -0.02 3.75 16 44 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.07 2.16 6.75 -2.39 -0.02 2.14 16 46 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 47 H 0.06 3.06 5.93 -2.39 -0.01 3.05 16 Total: -1.00 -76.19 378.29 2.03 -74.16 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: -0.29 Total: 23.71 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: 5.67 Total: -5.94 kcal Atomic # 7 Polarization: -112.03 SS G_CDS: -5.31 Total: -117.34 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.06 Total: -21.66 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -76.19 2.03 -74.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016845793.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.199 kcal (2) G-P(sol) polarization free energy of solvation -76.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds