Wall clock time and date at job start Tue Mar 31 2020 22:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86791 * 120.00240 * 2 1 4 4 H 1.48502 * 109.47357 * 270.00508 * 3 2 1 5 5 H 1.48501 * 109.46965 * 30.00764 * 3 2 1 6 6 H 1.48501 * 109.47254 * 150.00376 * 3 2 1 7 7 C 1.38813 * 120.00051 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00273 * 197.85042 * 7 2 1 9 9 N 1.36949 * 120.00019 * 17.84572 * 7 2 1 10 10 C 1.46842 * 120.38007 * 208.91056 * 9 7 2 11 11 C 1.53352 * 108.81031 * 236.88115 * 10 9 7 12 12 C 1.53185 * 108.76888 * 308.68896 * 11 10 9 13 13 C 1.52848 * 117.65762 * 269.97519 * 12 11 10 14 14 C 1.52811 * 117.71544 * 201.11434 * 12 11 10 15 15 H 1.09000 * 117.52727 * 0.14896 * 14 12 11 16 16 N 1.46497 * 117.50545 * 215.09680 * 14 12 11 17 17 C 1.34778 * 120.00197 * 155.02126 * 16 14 12 18 18 O 1.21593 * 120.00051 * 0.02562 * 17 16 14 19 19 C 1.47576 * 120.00238 * 179.72540 * 17 16 14 20 20 C 1.40240 * 119.83233 * 0.27896 * 19 17 16 21 21 C 1.36201 * 120.38172 * 179.97438 * 20 19 17 22 22 C 1.39913 * 119.95530 * 0.02562 * 21 20 19 23 23 C 1.46261 * 133.83086 * 179.97438 * 22 21 20 24 24 C 1.34452 * 107.02686 * 180.02562 * 23 22 21 25 25 N 1.36562 * 109.98136 * 359.97438 * 24 23 22 26 26 H 0.96999 * 125.07179 * 179.97438 * 25 24 23 27 27 C 1.37818 * 109.86175 * 359.97438 * 25 24 23 28 28 C 1.38683 * 133.37809 * 180.29188 * 27 25 24 29 29 C 1.53185 * 115.07757 * 55.44675 * 12 11 10 30 30 C 1.46844 * 120.37899 * 28.88939 * 9 7 2 31 31 H 0.96998 * 120.00031 * 359.97438 * 1 2 3 32 32 H 1.09005 * 109.57869 * 117.08926 * 10 9 7 33 33 H 1.08999 * 109.58797 * 356.68238 * 10 9 7 34 34 H 1.09002 * 109.59181 * 188.90590 * 11 10 9 35 35 H 1.09002 * 109.58638 * 68.47138 * 11 10 9 36 36 H 1.08999 * 117.50674 * 144.81493 * 13 12 11 37 37 H 1.08998 * 117.52308 * 359.74661 * 13 12 11 38 38 H 0.96998 * 120.00141 * 335.02816 * 16 14 12 39 39 H 1.08006 * 119.81060 * 0.02562 * 20 19 17 40 40 H 1.07999 * 120.01916 * 180.02562 * 21 20 19 41 41 H 1.07994 * 126.48602 * 0.02562 * 23 22 21 42 42 H 1.08004 * 125.00947 * 179.97438 * 24 23 22 43 43 H 1.08004 * 120.17053 * 359.94859 * 28 27 25 44 44 H 1.08997 * 109.58688 * 64.34181 * 29 12 11 45 45 H 1.08998 * 109.58927 * 184.77710 * 29 12 11 46 46 H 1.09004 * 109.57325 * 242.91797 * 30 9 7 47 47 H 1.08996 * 109.57940 * 3.31967 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6525 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0512 -1.2248 0.2861 9 7 1.3749 -2.3595 -0.3645 10 6 1.8051 -3.6490 0.1907 11 6 2.1665 -4.5893 -0.9656 12 6 1.0056 -4.6105 -1.9648 13 6 -0.0887 -5.6576 -1.7589 14 6 0.9056 -5.8049 -2.9128 15 1 1.6655 -6.5816 -2.8264 16 7 0.4109 -5.5531 -4.2685 17 6 0.7524 -6.3815 -5.2753 18 8 1.4709 -7.3382 -5.0582 19 6 0.2491 -6.1313 -6.6398 20 6 -0.5797 -5.0271 -6.8861 21 6 -1.0501 -4.7854 -8.1412 22 6 -0.7069 -5.6418 -9.1930 23 6 -1.0286 -5.6737 -10.6194 24 6 -0.4070 -6.7466 -11.1393 25 7 0.2861 -7.4030 -10.1628 26 1 0.8127 -8.2065 -10.2972 27 6 0.1258 -6.7537 -8.9577 28 6 0.6055 -6.9888 -7.6779 29 6 0.5852 -3.2385 -2.5009 30 6 0.2554 -2.3250 -1.3141 31 1 -0.4850 0.8400 0.0004 32 1 0.9943 -4.0838 0.7753 33 1 2.6776 -3.5002 0.8268 34 1 2.3351 -5.5948 -0.5799 35 1 3.0684 -4.2296 -1.4608 36 1 -1.1109 -5.3731 -2.0085 37 1 0.0171 -6.3372 -0.9134 38 1 -0.1625 -4.7901 -4.4416 39 1 -0.8458 -4.3642 -6.0760 40 1 -1.6877 -3.9331 -8.3244 41 1 -1.6481 -4.9689 -11.1539 42 1 -0.4496 -7.0453 -12.1763 43 1 1.2471 -7.8361 -7.4858 44 1 1.4019 -2.8061 -3.0789 45 1 -0.2955 -3.3476 -3.1337 46 1 -0.6514 -2.6777 -0.8226 47 1 0.1081 -1.3048 -1.6683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016854800.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:49 Heat of formation + Delta-G solvation = 71.563122 kcal Electronic energy + Delta-G solvation = -28391.600982 eV Core-core repulsion = 24540.936420 eV Total energy + Delta-G solvation = -3850.664562 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.56432 -39.98612 -38.48409 -36.73063 -35.46198 -33.18506 -32.25742 -31.51136 -30.09164 -29.72015 -29.27596 -28.13224 -24.35777 -24.14044 -22.83457 -22.42670 -21.74011 -21.05267 -20.75721 -20.19598 -18.61834 -18.19056 -17.21819 -16.59953 -16.22261 -16.05341 -15.05551 -14.93263 -14.75435 -14.50682 -14.33065 -14.06570 -14.00565 -13.67580 -13.51638 -13.39977 -13.28244 -12.98297 -12.60331 -12.31841 -12.09093 -11.89114 -11.67358 -11.47519 -11.34483 -11.26422 -10.94556 -10.73059 -10.47524 -10.26668 -10.06949 -10.02893 -9.90410 -9.68666 -9.56462 -9.33333 -8.62676 -8.44835 -8.38817 -8.05314 -6.62729 -5.77936 -3.20833 0.54500 1.21405 2.26260 2.69211 2.90354 3.19294 3.38650 3.45873 3.46941 3.74554 4.24489 4.37328 4.50674 4.51001 4.63169 4.81085 4.98358 5.03417 5.08967 5.17203 5.17478 5.24650 5.38377 5.40518 5.53799 5.60707 5.65653 5.72431 5.89008 6.06283 6.07902 6.13330 6.15107 6.23168 6.29599 6.30990 6.40039 6.47568 6.58840 6.62105 6.67918 6.73096 6.78350 6.85340 7.01961 7.12649 7.35459 7.55822 7.66062 7.81250 8.23481 8.47747 9.23140 9.86741 10.43418 11.29829 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015737 B = 0.002356 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.871647 B =11883.050198 C =13075.297060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.590 5.590 10 C 0.149 3.851 11 C -0.098 4.098 12 C -0.096 4.096 13 C -0.182 4.182 14 C 0.069 3.931 15 H 0.132 0.868 16 N -0.688 5.688 17 C 0.563 3.437 18 O -0.546 6.546 19 C -0.115 4.115 20 C -0.113 4.113 21 C -0.077 4.077 22 C -0.087 4.087 23 C -0.210 4.210 24 C 0.058 3.942 25 N -0.592 5.592 26 H 0.417 0.583 27 C 0.080 3.920 28 C -0.060 4.060 29 C -0.105 4.105 30 C 0.173 3.827 31 H 0.253 0.747 32 H 0.020 0.980 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.402 0.598 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.149 0.851 42 H 0.172 0.828 43 H 0.134 0.866 44 H 0.061 0.939 45 H 0.043 0.957 46 H 0.018 0.982 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.214 -14.214 -20.465 25.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.023 3.977 11 C -0.138 4.138 12 C -0.098 4.098 13 C -0.221 4.221 14 C -0.037 4.037 15 H 0.149 0.851 16 N -0.338 5.338 17 C 0.351 3.649 18 O -0.424 6.424 19 C -0.119 4.119 20 C -0.132 4.132 21 C -0.096 4.096 22 C -0.092 4.092 23 C -0.235 4.235 24 C -0.069 4.069 25 N -0.195 5.195 26 H 0.254 0.746 27 C -0.026 4.026 28 C -0.082 4.082 29 C -0.144 4.144 30 C 0.047 3.953 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.239 0.761 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.166 0.834 42 H 0.189 0.811 43 H 0.152 0.848 44 H 0.080 0.920 45 H 0.062 0.938 46 H 0.036 0.964 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.744 -14.843 -20.316 25.309 hybrid contribution 0.246 0.854 -0.244 0.922 sum -2.498 -13.989 -20.560 24.993 Atomic orbital electron populations 1.70033 1.05253 1.25464 1.53878 1.25043 0.95260 0.98427 1.00941 0.86308 0.79171 0.83718 0.77696 1.21457 1.21811 1.20440 1.19214 0.92868 0.85043 1.41011 0.91752 1.43978 1.37805 1.01567 1.47833 1.20858 0.97425 0.86896 0.92540 1.21695 0.95915 0.99297 0.96851 1.21958 0.98232 0.91157 0.98444 1.23535 0.95918 1.03009 0.99595 1.21887 1.01047 1.02503 0.78220 0.85053 1.45304 1.51409 1.29580 1.07468 1.18094 0.80165 0.82267 0.84362 1.90747 1.37756 1.29672 1.84271 1.19505 1.01799 0.97649 0.92962 1.20777 0.98113 0.96948 0.97403 1.20198 0.99693 0.98687 0.91021 1.19411 0.99733 0.95831 0.94262 1.21755 1.07835 1.01433 0.92473 1.21901 0.96390 0.94576 0.94022 1.41775 1.45097 1.26370 1.06272 0.74580 1.18082 1.01758 0.95511 0.87297 1.20054 0.99679 0.99930 0.88503 1.21817 0.99103 0.93610 0.99898 1.20753 0.88867 0.98615 0.87036 0.93668 0.96245 0.92673 0.92843 0.91813 0.88886 0.88433 0.76084 0.85444 0.85217 0.83351 0.81061 0.84797 0.91990 0.93836 0.96386 0.89194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.85 11.23 55.49 0.62 -25.22 16 2 C 0.00 0.05 4.88 -17.43 -0.09 -0.04 16 3 Si 0.90 21.58 29.59 -169.99 -5.03 16.55 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.25 -6.85 9.54 -15.05 -0.14 -6.99 16 8 H 0.06 1.73 7.89 -52.49 -0.41 1.32 16 9 N -0.59 -14.55 2.94 -172.25 -0.51 -15.06 16 10 C 0.15 3.11 6.52 -3.67 -0.02 3.08 16 11 C -0.10 -1.71 5.83 -26.45 -0.15 -1.87 16 12 C -0.10 -1.60 1.94 -154.49 -0.30 -1.90 16 13 C -0.18 -2.67 9.87 -26.79 -0.26 -2.94 16 14 C 0.07 1.04 6.14 -68.01 -0.42 0.62 16 15 H 0.13 2.08 7.40 -51.93 -0.38 1.70 16 16 N -0.69 -9.53 5.29 -54.91 -0.29 -9.82 16 17 C 0.56 8.33 7.76 -12.45 -0.10 8.23 16 18 O -0.55 -9.67 15.88 5.28 0.08 -9.59 16 19 C -0.11 -1.44 5.87 -104.95 -0.62 -2.06 16 20 C -0.11 -1.21 9.46 -39.56 -0.37 -1.59 16 21 C -0.08 -0.77 10.03 -39.69 -0.40 -1.17 16 22 C -0.09 -0.90 6.37 -105.04 -0.67 -1.57 16 23 C -0.21 -1.66 11.08 -37.70 -0.42 -2.08 16 24 C 0.06 0.36 11.81 -16.78 -0.20 0.16 16 25 N -0.59 -4.23 6.06 -10.69 -0.06 -4.29 16 26 H 0.42 1.79 8.96 -40.82 -0.37 1.42 16 27 C 0.08 0.83 7.26 -84.00 -0.61 0.22 16 28 C -0.06 -0.70 9.61 -39.03 -0.37 -1.08 16 29 C -0.10 -1.92 5.37 -26.45 -0.14 -2.06 16 30 C 0.17 4.01 5.40 -3.67 -0.02 3.99 16 31 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 1.13 7.92 -51.93 -0.41 0.72 16 34 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.40 4.89 5.11 -40.82 -0.21 4.69 16 39 H 0.13 1.17 6.36 -52.48 -0.33 0.84 16 40 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.17 0.40 8.06 -52.48 -0.42 -0.03 16 43 H 0.13 1.52 7.62 -52.48 -0.40 1.12 16 44 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.04 0.68 6.75 -51.93 -0.35 0.33 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.09 2.34 5.93 -51.93 -0.31 2.03 16 LS Contribution 380.44 15.07 5.73 5.73 Total: -1.00 -33.16 380.44 -11.29 -44.46 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -6.54 Total: 6.29 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -5.31 Total: -9.04 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: -0.24 Total: -54.40 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.08 Total: -9.59 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.16 -11.29 -44.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016854800.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.020 kcal (2) G-P(sol) polarization free energy of solvation -33.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds