Wall clock time and date at job start Tue Mar 31 2020 22:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86791 * 120.00240 * 2 1 4 4 H 1.48502 * 109.47357 * 270.00508 * 3 2 1 5 5 H 1.48501 * 109.46965 * 30.00764 * 3 2 1 6 6 H 1.48501 * 109.47254 * 150.00376 * 3 2 1 7 7 C 1.38813 * 120.00051 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00273 * 197.85042 * 7 2 1 9 9 N 1.36949 * 120.00019 * 17.84572 * 7 2 1 10 10 C 1.46842 * 120.38007 * 208.91056 * 9 7 2 11 11 C 1.53352 * 108.81031 * 236.88115 * 10 9 7 12 12 C 1.53185 * 108.76888 * 308.68896 * 11 10 9 13 13 C 1.52848 * 117.65762 * 269.97519 * 12 11 10 14 14 C 1.52811 * 117.71544 * 201.11434 * 12 11 10 15 15 H 1.09000 * 117.52727 * 0.14896 * 14 12 11 16 16 N 1.46497 * 117.50545 * 215.09680 * 14 12 11 17 17 C 1.34778 * 120.00197 * 155.02126 * 16 14 12 18 18 O 1.21593 * 120.00051 * 0.02562 * 17 16 14 19 19 C 1.47576 * 120.00238 * 179.72540 * 17 16 14 20 20 C 1.40240 * 119.83233 * 0.27896 * 19 17 16 21 21 C 1.36201 * 120.38172 * 179.97438 * 20 19 17 22 22 C 1.39913 * 119.95530 * 0.02562 * 21 20 19 23 23 C 1.46261 * 133.83086 * 179.97438 * 22 21 20 24 24 C 1.34452 * 107.02686 * 180.02562 * 23 22 21 25 25 N 1.36562 * 109.98136 * 359.97438 * 24 23 22 26 26 H 0.96999 * 125.07179 * 179.97438 * 25 24 23 27 27 C 1.37818 * 109.86175 * 359.97438 * 25 24 23 28 28 C 1.38683 * 133.37809 * 180.29188 * 27 25 24 29 29 C 1.53185 * 115.07757 * 55.44675 * 12 11 10 30 30 C 1.46844 * 120.37899 * 28.88939 * 9 7 2 31 31 H 0.96998 * 120.00031 * 359.97438 * 1 2 3 32 32 H 1.09005 * 109.57869 * 117.08926 * 10 9 7 33 33 H 1.08999 * 109.58797 * 356.68238 * 10 9 7 34 34 H 1.09002 * 109.59181 * 188.90590 * 11 10 9 35 35 H 1.09002 * 109.58638 * 68.47138 * 11 10 9 36 36 H 1.08999 * 117.50674 * 144.81493 * 13 12 11 37 37 H 1.08998 * 117.52308 * 359.74661 * 13 12 11 38 38 H 0.96998 * 120.00141 * 335.02816 * 16 14 12 39 39 H 1.08006 * 119.81060 * 0.02562 * 20 19 17 40 40 H 1.07999 * 120.01916 * 180.02562 * 21 20 19 41 41 H 1.07994 * 126.48602 * 0.02562 * 23 22 21 42 42 H 1.08004 * 125.00947 * 179.97438 * 24 23 22 43 43 H 1.08004 * 120.17053 * 359.94859 * 28 27 25 44 44 H 1.08997 * 109.58688 * 64.34181 * 29 12 11 45 45 H 1.08998 * 109.58927 * 184.77710 * 29 12 11 46 46 H 1.09004 * 109.57325 * 242.91797 * 30 9 7 47 47 H 1.08996 * 109.57940 * 3.31967 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6525 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0512 -1.2248 0.2861 9 7 1.3749 -2.3595 -0.3645 10 6 1.8051 -3.6490 0.1907 11 6 2.1665 -4.5893 -0.9656 12 6 1.0056 -4.6105 -1.9648 13 6 -0.0887 -5.6576 -1.7589 14 6 0.9056 -5.8049 -2.9128 15 1 1.6655 -6.5816 -2.8264 16 7 0.4109 -5.5531 -4.2685 17 6 0.7524 -6.3815 -5.2753 18 8 1.4709 -7.3382 -5.0582 19 6 0.2491 -6.1313 -6.6398 20 6 -0.5797 -5.0271 -6.8861 21 6 -1.0501 -4.7854 -8.1412 22 6 -0.7069 -5.6418 -9.1930 23 6 -1.0286 -5.6737 -10.6194 24 6 -0.4070 -6.7466 -11.1393 25 7 0.2861 -7.4030 -10.1628 26 1 0.8127 -8.2065 -10.2972 27 6 0.1258 -6.7537 -8.9577 28 6 0.6055 -6.9888 -7.6779 29 6 0.5852 -3.2385 -2.5009 30 6 0.2554 -2.3250 -1.3141 31 1 -0.4850 0.8400 0.0004 32 1 0.9943 -4.0838 0.7753 33 1 2.6776 -3.5002 0.8268 34 1 2.3351 -5.5948 -0.5799 35 1 3.0684 -4.2296 -1.4608 36 1 -1.1109 -5.3731 -2.0085 37 1 0.0171 -6.3372 -0.9134 38 1 -0.1625 -4.7901 -4.4416 39 1 -0.8458 -4.3642 -6.0760 40 1 -1.6877 -3.9331 -8.3244 41 1 -1.6481 -4.9689 -11.1539 42 1 -0.4496 -7.0453 -12.1763 43 1 1.2471 -7.8361 -7.4858 44 1 1.4019 -2.8061 -3.0789 45 1 -0.2955 -3.3476 -3.1337 46 1 -0.6514 -2.6777 -0.8226 47 1 0.1081 -1.3048 -1.6683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016854800.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:48 Heat of formation + Delta-G solvation = 52.274702 kcal Electronic energy + Delta-G solvation = -28392.437391 eV Core-core repulsion = 24540.936420 eV Total energy + Delta-G solvation = -3851.500970 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.24759 -41.14631 -39.79777 -37.59083 -37.09654 -34.59856 -33.28621 -32.94717 -31.73839 -30.57384 -30.10545 -29.61264 -26.23084 -25.07673 -24.04966 -23.57142 -23.07467 -22.23010 -21.61083 -21.29340 -19.82604 -19.38966 -18.45049 -17.84156 -17.37856 -17.03930 -16.79935 -16.06019 -15.89993 -15.69228 -15.35684 -15.31211 -15.02656 -14.98290 -14.80328 -14.65515 -14.31195 -14.13981 -13.91301 -13.75579 -13.33227 -13.06144 -12.93901 -12.79804 -12.68511 -12.58499 -12.46662 -12.29111 -12.04439 -11.97666 -11.76857 -11.37392 -11.26854 -11.13068 -10.79082 -10.68831 -10.47583 -9.72604 -9.28925 -8.72082 -8.60351 -7.84825 -5.30750 -0.27862 0.44324 1.47406 1.49079 1.57334 1.57478 1.91837 1.99578 2.31160 2.52786 2.84714 3.02693 3.29584 3.60110 3.66142 3.75057 3.82067 3.86671 3.96712 4.00813 4.13826 4.14557 4.28035 4.35143 4.54259 4.58922 4.67725 4.71988 4.72587 4.86758 4.90320 4.95787 4.99395 5.01425 5.02258 5.09702 5.22921 5.26907 5.31632 5.38677 5.46479 5.48310 5.55580 5.66415 5.67664 5.75549 5.80160 6.07824 6.42917 6.46513 6.64934 7.12246 7.18389 7.90414 8.41287 9.20110 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015737 B = 0.002356 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.871647 B =11883.050198 C =13075.297060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.048 4.048 3 Si 0.963 3.037 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.271 1.271 7 C -0.262 4.262 8 H 0.062 0.938 9 N -0.609 5.609 10 C 0.146 3.854 11 C -0.087 4.087 12 C -0.114 4.114 13 C -0.168 4.168 14 C 0.082 3.918 15 H 0.127 0.873 16 N -0.683 5.683 17 C 0.563 3.437 18 O -0.582 6.582 19 C -0.138 4.138 20 C -0.117 4.117 21 C -0.083 4.083 22 C -0.101 4.101 23 C -0.233 4.233 24 C 0.079 3.921 25 N -0.586 5.586 26 H 0.430 0.570 27 C 0.061 3.939 28 C -0.066 4.066 29 C -0.090 4.090 30 C 0.180 3.820 31 H 0.250 0.750 32 H 0.019 0.981 33 H 0.052 0.948 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.410 0.590 39 H 0.139 0.861 40 H 0.150 0.850 41 H 0.167 0.833 42 H 0.216 0.784 43 H 0.128 0.872 44 H 0.049 0.951 45 H 0.070 0.930 46 H 0.001 0.999 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.480 -15.161 -22.863 27.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.244 4.244 3 Si 0.792 3.208 4 H -0.212 1.212 5 H -0.221 1.221 6 H -0.196 1.196 7 C -0.393 4.393 8 H 0.080 0.920 9 N -0.332 5.332 10 C 0.021 3.979 11 C -0.127 4.127 12 C -0.116 4.116 13 C -0.206 4.206 14 C -0.024 4.024 15 H 0.145 0.855 16 N -0.333 5.333 17 C 0.353 3.647 18 O -0.463 6.463 19 C -0.143 4.143 20 C -0.137 4.137 21 C -0.102 4.102 22 C -0.107 4.107 23 C -0.258 4.258 24 C -0.048 4.048 25 N -0.189 5.189 26 H 0.270 0.730 27 C -0.046 4.046 28 C -0.087 4.087 29 C -0.129 4.129 30 C 0.054 3.946 31 H 0.059 0.941 32 H 0.037 0.963 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.119 0.881 37 H 0.130 0.870 38 H 0.249 0.751 39 H 0.157 0.843 40 H 0.168 0.832 41 H 0.185 0.815 42 H 0.233 0.767 43 H 0.146 0.854 44 H 0.068 0.932 45 H 0.089 0.911 46 H 0.019 0.981 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.001 -15.813 -22.723 27.846 hybrid contribution 0.313 1.080 0.397 1.192 sum -2.688 -14.734 -22.325 26.884 Atomic orbital electron populations 1.70171 1.06512 1.25806 1.55236 1.25746 0.96020 1.01313 1.01330 0.85329 0.78134 0.79828 0.77543 1.21224 1.22096 1.19592 1.19493 0.93005 0.86366 1.40411 0.92031 1.44248 1.37982 1.02259 1.48688 1.20980 0.97107 0.85994 0.93840 1.21536 0.95775 0.99705 0.95645 1.21819 0.99286 0.90811 0.99667 1.23626 0.95744 1.01556 0.99683 1.21727 1.01096 1.00753 0.78783 0.85529 1.45252 1.51254 1.29786 1.06970 1.18445 0.79416 0.81613 0.85200 1.90717 1.39508 1.31195 1.84916 1.19401 1.03678 0.99260 0.91921 1.20899 0.97914 0.96605 0.98300 1.20474 0.99706 0.99291 0.90697 1.19867 0.99444 0.95656 0.95719 1.22097 1.09275 1.02982 0.91408 1.22640 0.93791 0.93070 0.95329 1.41910 1.44923 1.26636 1.05458 0.73040 1.18135 1.02281 0.96376 0.87804 1.20081 0.99706 0.99687 0.89270 1.21549 0.99803 0.93564 0.97952 1.20558 0.88014 0.97768 0.88252 0.94077 0.96327 0.92960 0.89987 0.92815 0.88079 0.87009 0.75099 0.84294 0.83208 0.81527 0.76734 0.85365 0.93222 0.91128 0.98130 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.74 11.23 21.65 0.24 -54.49 16 2 C -0.05 -2.71 4.88 84.86 0.41 -2.30 16 3 Si 0.96 45.03 29.59 68.60 2.03 47.06 16 4 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.26 -14.53 9.54 84.03 0.80 -13.72 16 8 H 0.06 3.36 7.89 -2.91 -0.02 3.34 16 9 N -0.61 -30.56 2.94 -698.88 -2.05 -32.61 16 10 C 0.15 6.08 6.52 86.43 0.56 6.64 16 11 C -0.09 -2.96 5.83 30.77 0.18 -2.78 16 12 C -0.11 -3.67 1.94 -52.17 -0.10 -3.77 16 13 C -0.17 -4.58 9.87 30.56 0.30 -4.28 16 14 C 0.08 2.36 6.14 44.94 0.28 2.64 16 15 H 0.13 3.86 7.40 -2.39 -0.02 3.84 16 16 N -0.68 -18.30 5.29 -445.90 -2.36 -20.66 16 17 C 0.56 16.62 7.76 86.71 0.67 17.30 16 18 O -0.58 -20.82 15.88 -4.01 -0.06 -20.89 16 19 C -0.14 -3.47 5.87 -20.07 -0.12 -3.59 16 20 C -0.12 -2.45 9.46 22.28 0.21 -2.24 16 21 C -0.08 -1.57 10.03 22.20 0.22 -1.34 16 22 C -0.10 -1.94 6.37 -20.14 -0.13 -2.07 16 23 C -0.23 -3.05 11.08 23.49 0.26 -2.79 16 24 C 0.08 0.69 11.81 83.09 0.98 1.67 16 25 N -0.59 -6.99 6.06 -187.72 -1.14 -8.13 16 26 H 0.43 2.71 8.96 -92.71 -0.83 1.88 16 27 C 0.06 1.20 7.26 38.96 0.28 1.48 16 28 C -0.07 -1.55 9.61 22.63 0.22 -1.33 16 29 C -0.09 -3.24 5.37 30.77 0.17 -3.08 16 30 C 0.18 8.49 5.40 86.43 0.47 8.96 16 31 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 32 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.05 2.15 7.92 -2.39 -0.02 2.13 16 34 H 0.08 2.31 8.10 -2.39 -0.02 2.29 16 35 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 38 H 0.41 9.48 5.11 -92.71 -0.47 9.01 16 39 H 0.14 2.41 6.36 -2.91 -0.02 2.39 16 40 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 41 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 42 H 0.22 -0.12 8.06 -2.91 -0.02 -0.14 16 43 H 0.13 3.01 7.62 -2.91 -0.02 2.99 16 44 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.07 2.13 6.75 -2.39 -0.02 2.12 16 46 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 47 H 0.06 3.03 5.93 -2.39 -0.01 3.02 16 Total: -1.00 -73.66 380.44 2.04 -71.63 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: -0.29 Total: 22.71 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 5.67 Total: -4.61 kcal Atomic # 7 Polarization: -110.59 SS G_CDS: -5.31 Total: -115.90 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.06 Total: -20.89 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -73.66 2.04 -71.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016854800.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.901 kcal (2) G-P(sol) polarization free energy of solvation -73.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds