Wall clock time and date at job start Tue Mar 31 2020 22:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00286 * 2 1 4 4 H 1.48495 * 109.47250 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47165 * 120.00120 * 3 2 1 6 6 H 1.48504 * 109.47405 * 240.00305 * 3 2 1 7 7 C 1.38811 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00032 * 162.28873 * 7 2 1 9 9 N 1.36943 * 120.00018 * 342.28973 * 7 2 1 10 10 C 1.46844 * 120.37796 * 330.95783 * 9 7 2 11 11 C 1.52871 * 109.07030 * 236.85328 * 10 9 7 12 12 C 1.53177 * 108.82625 * 308.91367 * 11 10 9 13 13 C 1.52856 * 117.65644 * 269.85036 * 12 11 10 14 14 C 1.52822 * 117.71182 * 200.99276 * 12 11 10 15 15 H 1.09003 * 117.50022 * 215.09393 * 14 12 11 16 16 N 1.46495 * 117.50158 * 0.13689 * 14 12 11 17 17 C 1.34782 * 119.99507 * 205.00150 * 16 14 12 18 18 O 1.21595 * 120.00288 * 359.97438 * 17 16 14 19 19 C 1.47502 * 119.99355 * 180.02562 * 17 16 14 20 20 C 1.41197 * 126.36727 * 179.97438 * 19 17 16 21 21 C 1.37993 * 106.86538 * 179.97438 * 20 19 17 22 22 C 1.41392 * 131.98412 * 180.02562 * 21 20 19 23 23 C 1.35744 * 119.32803 * 179.97438 * 22 21 20 24 24 C 1.40832 * 119.72262 * 0.02562 * 23 22 21 25 25 C 1.34540 * 120.57859 * 359.97438 * 24 23 22 26 26 N 1.37431 * 120.74561 * 0.02562 * 25 24 23 27 27 C 1.35130 * 131.28177 * 180.38299 * 26 25 24 28 28 C 1.53178 * 115.07906 * 55.31819 * 12 11 10 29 29 C 1.46839 * 120.37901 * 151.22549 * 9 7 2 30 30 H 0.97000 * 119.99597 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.57737 * 356.68311 * 10 9 7 32 32 H 1.08990 * 109.58155 * 117.08998 * 10 9 7 33 33 H 1.09009 * 109.66214 * 189.04410 * 11 10 9 34 34 H 1.09001 * 109.45030 * 68.65491 * 11 10 9 35 35 H 1.09003 * 117.50266 * 359.76122 * 13 12 11 36 36 H 1.08991 * 117.50321 * 144.78196 * 13 12 11 37 37 H 0.96995 * 120.00118 * 25.00480 * 16 14 12 38 38 H 1.08006 * 126.56789 * 0.02562 * 20 19 17 39 39 H 1.07997 * 120.33671 * 359.97438 * 22 21 20 40 40 H 1.08002 * 120.13554 * 180.02562 * 23 22 21 41 41 H 1.07995 * 119.70652 * 180.02562 * 24 23 22 42 42 H 1.08002 * 119.62183 * 180.02562 * 25 24 23 43 43 H 1.08004 * 125.61854 * 359.91063 * 27 26 25 44 44 H 1.09003 * 109.59144 * 184.76231 * 28 12 11 45 45 H 1.09007 * 109.58622 * 64.33177 * 28 12 11 46 46 H 1.08997 * 109.58229 * 242.90148 * 29 9 7 47 47 H 1.08995 * 109.58407 * 3.31272 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0518 -1.2242 -0.2851 9 7 1.3742 -2.3602 0.3597 10 6 0.2549 -2.3280 1.3097 11 6 0.5769 -3.2417 2.4922 12 6 1.0002 -4.6129 1.9565 13 6 -0.0929 -5.6603 1.7452 14 6 0.8971 -5.8084 2.9029 15 1 1.6579 -6.5843 2.8183 16 7 0.3969 -5.5581 4.2569 17 6 0.7354 -6.3872 5.2642 18 8 1.4555 -7.3431 5.0490 19 6 0.2314 -6.1355 6.6273 20 6 0.4988 -6.9124 7.7756 21 6 -0.1695 -6.3174 8.8261 22 6 -0.2649 -6.6510 10.1968 23 6 -1.0085 -5.8699 11.0211 24 6 -1.6733 -4.7420 10.5022 25 6 -1.5775 -4.4314 9.1967 26 7 -0.8305 -5.2072 8.3430 27 6 -0.5845 -5.0930 7.0191 28 6 2.1648 -4.5901 0.9618 29 6 1.8074 -3.6489 -0.1950 30 1 -0.4849 0.8401 -0.0004 31 1 0.1084 -1.3088 1.6672 32 1 -0.6522 -2.6784 0.8174 33 1 -0.3061 -3.3519 3.1217 34 1 1.3912 -2.8093 3.0737 35 1 -1.1162 -5.3766 1.9911 36 1 0.0166 -6.3383 0.8989 37 1 -0.1778 -4.7958 4.4284 38 1 1.1101 -7.8015 7.8229 39 1 0.2488 -7.5185 10.5841 40 1 -1.0900 -6.1124 12.0703 41 1 -2.2646 -4.1204 11.1583 42 1 -2.0934 -3.5626 8.8153 43 1 -0.9659 -4.3159 6.3733 44 1 2.3356 -5.5951 0.5758 45 1 3.0647 -4.2303 1.4609 46 1 0.9993 -4.0836 -0.7831 47 1 2.6823 -3.4988 -0.8275 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016862356.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:03 Heat of formation + Delta-G solvation = 87.858883 kcal Electronic energy + Delta-G solvation = -28412.232560 eV Core-core repulsion = 24562.274635 eV Total energy + Delta-G solvation = -3849.957924 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.48579 -39.77859 -38.30451 -36.66751 -35.44030 -33.35839 -33.13342 -31.53851 -30.18299 -30.13455 -28.27852 -27.97467 -24.76865 -24.31609 -23.06614 -22.43157 -22.20702 -21.47633 -20.60122 -19.91224 -18.23535 -17.94783 -17.44688 -16.64489 -16.19339 -15.91783 -15.78125 -15.47032 -14.83862 -14.73644 -14.49489 -14.20800 -14.06960 -13.74456 -13.54573 -13.31685 -12.98911 -12.66536 -12.59572 -12.27239 -12.23747 -11.96209 -11.72558 -11.63258 -11.47928 -11.34764 -10.95027 -10.76007 -10.71933 -10.50328 -10.28360 -10.03294 -9.90886 -9.70310 -9.56841 -9.32785 -8.89266 -8.45732 -8.36035 -7.70247 -6.63440 -5.79364 -3.21962 0.42654 1.01939 1.92697 2.34422 3.15739 3.20474 3.37787 3.43292 3.45244 3.45900 4.12370 4.25875 4.41956 4.45182 4.49723 4.61037 4.73450 4.89162 5.03535 5.07639 5.17509 5.17952 5.25573 5.39127 5.47122 5.53444 5.61337 5.65116 5.77047 5.91224 5.92163 6.01666 6.08260 6.13243 6.16841 6.30085 6.42003 6.46785 6.53651 6.58575 6.63233 6.69380 6.73973 6.85183 6.91269 7.01782 7.34127 7.61637 7.64057 7.79512 8.32179 8.46494 9.21932 9.85673 10.42382 11.28573 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013791 B = 0.002458 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.862220 B =11386.387455 C =12851.369122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.291 1.291 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.252 4.252 8 H 0.064 0.936 9 N -0.590 5.590 10 C 0.173 3.827 11 C -0.104 4.104 12 C -0.098 4.098 13 C -0.183 4.183 14 C 0.072 3.928 15 H 0.132 0.868 16 N -0.691 5.691 17 C 0.589 3.411 18 O -0.542 6.542 19 C -0.165 4.165 20 C -0.134 4.134 21 C 0.022 3.978 22 C -0.073 4.073 23 C -0.137 4.137 24 C -0.135 4.135 25 C 0.041 3.959 26 N -0.338 5.338 27 C -0.009 4.009 28 C -0.098 4.098 29 C 0.150 3.850 30 H 0.254 0.746 31 H 0.089 0.911 32 H 0.017 0.983 33 H 0.042 0.958 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.399 0.601 38 H 0.156 0.844 39 H 0.143 0.857 40 H 0.134 0.866 41 H 0.146 0.854 42 H 0.163 0.837 43 H 0.177 0.823 44 H 0.053 0.947 45 H 0.063 0.937 46 H 0.020 0.980 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.173 -11.390 20.235 23.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.217 1.217 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.382 4.382 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.143 4.143 12 C -0.099 4.099 13 C -0.221 4.221 14 C -0.034 4.034 15 H 0.150 0.850 16 N -0.340 5.340 17 C 0.376 3.624 18 O -0.420 6.420 19 C -0.172 4.172 20 C -0.158 4.158 21 C -0.082 4.082 22 C -0.092 4.092 23 C -0.157 4.157 24 C -0.155 4.155 25 C -0.078 4.078 26 N -0.001 5.001 27 C -0.143 4.143 28 C -0.138 4.138 29 C 0.023 3.977 30 H 0.064 0.936 31 H 0.107 0.893 32 H 0.035 0.965 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.235 0.765 38 H 0.173 0.827 39 H 0.161 0.839 40 H 0.151 0.849 41 H 0.163 0.837 42 H 0.180 0.820 43 H 0.194 0.806 44 H 0.072 0.928 45 H 0.082 0.918 46 H 0.038 0.962 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.928 -11.724 20.134 23.814 hybrid contribution -0.076 1.377 0.105 1.384 sum -5.004 -10.347 20.240 23.275 Atomic orbital electron populations 1.70030 1.05255 1.25539 1.53872 1.25038 0.95254 0.98405 1.00957 0.86391 0.78955 0.83388 0.78181 1.21684 1.21057 1.20860 1.19161 0.92802 0.85024 1.41164 0.91821 1.43947 1.37746 1.01582 1.47897 1.20640 0.88931 0.98551 0.87141 1.21726 0.99023 0.93688 0.99886 1.21950 0.98237 0.91131 0.98589 1.23533 0.95902 1.03011 0.99663 1.21867 1.00910 1.02375 0.78251 0.85013 1.45242 1.51577 1.29592 1.07583 1.17369 0.79811 0.82063 0.83110 1.90754 1.37546 1.29706 1.83962 1.19648 1.04651 0.98615 0.94308 1.21105 1.03622 1.01836 0.89216 1.18835 1.02866 0.91808 0.94690 1.20673 0.98670 1.00120 0.89708 1.20944 0.98757 0.95575 1.00421 1.20746 1.01915 0.99043 0.93819 1.21729 0.97878 0.97468 0.90677 1.41285 1.31888 1.19251 1.07695 1.22172 1.05988 1.03298 0.82802 1.21693 0.95886 0.99322 0.96875 1.20858 0.97419 0.86862 0.92568 0.93649 0.89296 0.96464 0.93895 0.92064 0.88978 0.88449 0.76509 0.82676 0.83903 0.84857 0.83662 0.81952 0.80584 0.92796 0.91815 0.96234 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.77 11.23 55.49 0.62 -25.15 16 2 C 0.00 0.05 4.89 -17.43 -0.09 -0.03 16 3 Si 0.90 21.48 29.59 -169.99 -5.03 16.45 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.25 -6.84 9.54 -15.06 -0.14 -6.98 16 8 H 0.06 1.71 7.89 -52.49 -0.41 1.29 16 9 N -0.59 -14.53 2.94 -172.56 -0.51 -15.04 16 10 C 0.17 3.99 5.37 -3.92 -0.02 3.97 16 11 C -0.10 -1.88 5.36 -26.71 -0.14 -2.02 16 12 C -0.10 -1.62 1.94 -154.49 -0.30 -1.92 16 13 C -0.18 -2.68 9.87 -26.78 -0.26 -2.94 16 14 C 0.07 1.08 6.14 -68.00 -0.42 0.66 16 15 H 0.13 2.11 7.40 -51.93 -0.38 1.72 16 16 N -0.69 -9.52 5.33 -54.93 -0.29 -9.82 16 17 C 0.59 8.90 7.82 -12.48 -0.10 8.80 16 18 O -0.54 -9.98 16.48 5.28 0.09 -9.89 16 19 C -0.16 -2.12 6.12 -105.07 -0.64 -2.76 16 20 C -0.13 -1.63 10.78 -38.55 -0.42 -2.04 16 21 C 0.02 0.23 6.70 -84.00 -0.56 -0.33 16 22 C -0.07 -0.58 10.11 -39.27 -0.40 -0.98 16 23 C -0.14 -0.88 10.07 -39.49 -0.40 -1.28 16 24 C -0.14 -0.82 9.97 -39.91 -0.40 -1.21 16 25 C 0.04 0.29 10.89 -16.35 -0.18 0.12 16 26 N -0.34 -3.36 2.92 -60.42 -0.18 -3.53 16 27 C -0.01 -0.09 11.09 -16.17 -0.18 -0.27 16 28 C -0.10 -1.72 5.83 -26.46 -0.15 -1.87 16 29 C 0.15 3.11 6.52 -3.67 -0.02 3.08 16 30 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.09 2.30 5.94 -51.93 -0.31 1.99 16 32 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.04 0.66 6.75 -51.92 -0.35 0.31 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.40 4.71 6.01 -40.82 -0.25 4.47 16 38 H 0.16 1.77 8.06 -52.48 -0.42 1.35 16 39 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 41 H 0.15 0.47 8.06 -52.49 -0.42 0.04 16 42 H 0.16 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.18 1.36 7.42 -52.48 -0.39 0.97 16 44 H 0.05 0.82 8.10 -51.93 -0.42 0.40 16 45 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.05 1.13 7.92 -51.93 -0.41 0.72 16 LS Contribution 383.68 15.07 5.78 5.78 Total: -1.00 -33.34 383.68 -11.05 -44.39 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -6.71 Total: 4.82 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -4.82 Total: -8.01 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: -0.35 Total: -53.54 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.34 -11.05 -44.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016862356.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.244 kcal (2) G-P(sol) polarization free energy of solvation -33.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds