Wall clock time and date at job start Tue Mar 31 2020 22:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00286 * 2 1 4 4 H 1.48495 * 109.47250 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47165 * 120.00120 * 3 2 1 6 6 H 1.48504 * 109.47405 * 240.00305 * 3 2 1 7 7 C 1.38811 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00032 * 162.28873 * 7 2 1 9 9 N 1.36943 * 120.00018 * 342.28973 * 7 2 1 10 10 C 1.46844 * 120.37796 * 330.95783 * 9 7 2 11 11 C 1.52871 * 109.07030 * 236.85328 * 10 9 7 12 12 C 1.53177 * 108.82625 * 308.91367 * 11 10 9 13 13 C 1.52856 * 117.65644 * 269.85036 * 12 11 10 14 14 C 1.52822 * 117.71182 * 200.99276 * 12 11 10 15 15 H 1.09003 * 117.50022 * 215.09393 * 14 12 11 16 16 N 1.46495 * 117.50158 * 0.13689 * 14 12 11 17 17 C 1.34782 * 119.99507 * 205.00150 * 16 14 12 18 18 O 1.21595 * 120.00288 * 359.97438 * 17 16 14 19 19 C 1.47502 * 119.99355 * 180.02562 * 17 16 14 20 20 C 1.41197 * 126.36727 * 179.97438 * 19 17 16 21 21 C 1.37993 * 106.86538 * 179.97438 * 20 19 17 22 22 C 1.41392 * 131.98412 * 180.02562 * 21 20 19 23 23 C 1.35744 * 119.32803 * 179.97438 * 22 21 20 24 24 C 1.40832 * 119.72262 * 0.02562 * 23 22 21 25 25 C 1.34540 * 120.57859 * 359.97438 * 24 23 22 26 26 N 1.37431 * 120.74561 * 0.02562 * 25 24 23 27 27 C 1.35130 * 131.28177 * 180.38299 * 26 25 24 28 28 C 1.53178 * 115.07906 * 55.31819 * 12 11 10 29 29 C 1.46839 * 120.37901 * 151.22549 * 9 7 2 30 30 H 0.97000 * 119.99597 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.57737 * 356.68311 * 10 9 7 32 32 H 1.08990 * 109.58155 * 117.08998 * 10 9 7 33 33 H 1.09009 * 109.66214 * 189.04410 * 11 10 9 34 34 H 1.09001 * 109.45030 * 68.65491 * 11 10 9 35 35 H 1.09003 * 117.50266 * 359.76122 * 13 12 11 36 36 H 1.08991 * 117.50321 * 144.78196 * 13 12 11 37 37 H 0.96995 * 120.00118 * 25.00480 * 16 14 12 38 38 H 1.08006 * 126.56789 * 0.02562 * 20 19 17 39 39 H 1.07997 * 120.33671 * 359.97438 * 22 21 20 40 40 H 1.08002 * 120.13554 * 180.02562 * 23 22 21 41 41 H 1.07995 * 119.70652 * 180.02562 * 24 23 22 42 42 H 1.08002 * 119.62183 * 180.02562 * 25 24 23 43 43 H 1.08004 * 125.61854 * 359.91063 * 27 26 25 44 44 H 1.09003 * 109.59144 * 184.76231 * 28 12 11 45 45 H 1.09007 * 109.58622 * 64.33177 * 28 12 11 46 46 H 1.08997 * 109.58229 * 242.90148 * 29 9 7 47 47 H 1.08995 * 109.58407 * 3.31272 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0518 -1.2242 -0.2851 9 7 1.3742 -2.3602 0.3597 10 6 0.2549 -2.3280 1.3097 11 6 0.5769 -3.2417 2.4922 12 6 1.0002 -4.6129 1.9565 13 6 -0.0929 -5.6603 1.7452 14 6 0.8971 -5.8084 2.9029 15 1 1.6579 -6.5843 2.8183 16 7 0.3969 -5.5581 4.2569 17 6 0.7354 -6.3872 5.2642 18 8 1.4555 -7.3431 5.0490 19 6 0.2314 -6.1355 6.6273 20 6 0.4988 -6.9124 7.7756 21 6 -0.1695 -6.3174 8.8261 22 6 -0.2649 -6.6510 10.1968 23 6 -1.0085 -5.8699 11.0211 24 6 -1.6733 -4.7420 10.5022 25 6 -1.5775 -4.4314 9.1967 26 7 -0.8305 -5.2072 8.3430 27 6 -0.5845 -5.0930 7.0191 28 6 2.1648 -4.5901 0.9618 29 6 1.8074 -3.6489 -0.1950 30 1 -0.4849 0.8401 -0.0004 31 1 0.1084 -1.3088 1.6672 32 1 -0.6522 -2.6784 0.8174 33 1 -0.3061 -3.3519 3.1217 34 1 1.3912 -2.8093 3.0737 35 1 -1.1162 -5.3766 1.9911 36 1 0.0166 -6.3383 0.8989 37 1 -0.1778 -4.7958 4.4284 38 1 1.1101 -7.8015 7.8229 39 1 0.2488 -7.5185 10.5841 40 1 -1.0900 -6.1124 12.0703 41 1 -2.2646 -4.1204 11.1583 42 1 -2.0934 -3.5626 8.8153 43 1 -0.9659 -4.3159 6.3733 44 1 2.3356 -5.5951 0.5758 45 1 3.0647 -4.2303 1.4609 46 1 0.9993 -4.0836 -0.7831 47 1 2.6823 -3.4988 -0.8275 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016862356.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:02 Heat of formation + Delta-G solvation = 69.758230 kcal Electronic energy + Delta-G solvation = -28413.017463 eV Core-core repulsion = 24562.274635 eV Total energy + Delta-G solvation = -3850.742828 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.20077 -41.01304 -39.62835 -37.36629 -37.06541 -34.56282 -34.01580 -33.26766 -31.77103 -31.00291 -29.84072 -28.70928 -26.23903 -25.57847 -24.07255 -23.75669 -23.10097 -22.76343 -21.96064 -20.97992 -19.80367 -18.76948 -18.33767 -18.19650 -17.18022 -16.89169 -16.75385 -16.56176 -16.26032 -15.70136 -15.61647 -15.41261 -15.32593 -15.15909 -14.90748 -14.69342 -14.32465 -14.12622 -13.75700 -13.43560 -13.32369 -13.04824 -12.92530 -12.85186 -12.56888 -12.54172 -12.44391 -12.32929 -12.21106 -11.98962 -11.76528 -11.45627 -11.37387 -11.27895 -11.16427 -10.68411 -10.47083 -9.80896 -9.49145 -8.60245 -8.37502 -7.85328 -5.30939 -0.19585 0.35475 1.04159 1.47450 1.49065 1.56069 1.67122 2.11129 2.38380 2.52537 2.58514 3.00163 3.29305 3.50431 3.65383 3.76844 3.82507 3.86018 3.90796 4.00805 4.03051 4.14670 4.16588 4.28336 4.36966 4.54240 4.54627 4.67777 4.72991 4.87095 4.88900 4.89567 4.93493 4.99499 5.02067 5.10691 5.23200 5.23678 5.28376 5.32078 5.38791 5.41728 5.51467 5.55817 5.64287 5.67049 5.80133 5.86576 6.26642 6.42619 6.53149 7.18233 7.19971 7.90308 8.41141 9.19700 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013791 B = 0.002458 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.862220 B =11386.387455 C =12851.369122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.048 4.048 3 Si 0.963 3.037 4 H -0.292 1.292 5 H -0.280 1.280 6 H -0.277 1.277 7 C -0.264 4.264 8 H 0.061 0.939 9 N -0.609 5.609 10 C 0.180 3.820 11 C -0.088 4.088 12 C -0.115 4.115 13 C -0.168 4.168 14 C 0.083 3.917 15 H 0.125 0.875 16 N -0.683 5.683 17 C 0.589 3.411 18 O -0.584 6.584 19 C -0.192 4.192 20 C -0.168 4.168 21 C 0.019 3.981 22 C -0.099 4.099 23 C -0.123 4.123 24 C -0.130 4.130 25 C 0.022 3.978 26 N -0.340 5.340 27 C -0.006 4.006 28 C -0.088 4.088 29 C 0.147 3.853 30 H 0.250 0.750 31 H 0.056 0.944 32 H 0.000 1.000 33 H 0.073 0.927 34 H 0.048 0.952 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.410 0.590 38 H 0.147 0.853 39 H 0.158 0.842 40 H 0.164 0.836 41 H 0.181 0.819 42 H 0.191 0.809 43 H 0.202 0.798 44 H 0.081 0.919 45 H 0.053 0.947 46 H 0.019 0.981 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.266 -11.182 22.599 25.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.243 4.243 3 Si 0.791 3.209 4 H -0.218 1.218 5 H -0.206 1.206 6 H -0.203 1.203 7 C -0.394 4.394 8 H 0.079 0.921 9 N -0.332 5.332 10 C 0.054 3.946 11 C -0.128 4.128 12 C -0.116 4.116 13 C -0.206 4.206 14 C -0.023 4.023 15 H 0.142 0.858 16 N -0.332 5.332 17 C 0.379 3.621 18 O -0.465 6.465 19 C -0.200 4.200 20 C -0.192 4.192 21 C -0.086 4.086 22 C -0.118 4.118 23 C -0.143 4.143 24 C -0.150 4.150 25 C -0.095 4.095 26 N -0.004 5.004 27 C -0.140 4.140 28 C -0.127 4.127 29 C 0.021 3.979 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.018 0.982 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.120 0.880 36 H 0.129 0.871 37 H 0.247 0.753 38 H 0.165 0.835 39 H 0.176 0.824 40 H 0.181 0.819 41 H 0.198 0.802 42 H 0.208 0.792 43 H 0.219 0.781 44 H 0.099 0.901 45 H 0.071 0.929 46 H 0.037 0.963 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.028 -11.516 22.506 25.990 hybrid contribution 0.197 1.310 -0.499 1.416 sum -5.831 -10.206 22.007 24.950 Atomic orbital electron populations 1.70169 1.06490 1.25868 1.55177 1.25738 0.96019 1.01275 1.01298 0.85409 0.77673 0.79540 0.78236 1.21834 1.20617 1.20324 1.19449 0.92959 0.86364 1.40651 0.92115 1.44224 1.37961 1.02236 1.48784 1.20455 0.88023 0.97767 0.88318 1.21466 0.99852 0.93479 0.97963 1.21817 0.99214 0.90861 0.99711 1.23623 0.95800 1.01523 0.99641 1.21697 1.01002 1.00676 0.78883 0.85750 1.45148 1.51346 1.29751 1.06936 1.17709 0.79015 0.81388 0.84012 1.90718 1.39576 1.31508 1.84709 1.19514 1.06741 1.00488 0.93263 1.21153 1.05373 1.02592 0.90119 1.19111 1.02212 0.91788 0.95493 1.20964 1.00325 1.01681 0.88810 1.21431 0.96582 0.94606 1.01660 1.21286 1.01064 0.98825 0.93799 1.22402 0.97871 0.98144 0.91070 1.41496 1.31806 1.19262 1.07787 1.22417 1.05147 1.02940 0.83475 1.21538 0.95799 0.99679 0.95721 1.20973 0.97081 0.86002 0.93836 0.94067 0.92559 0.98190 0.90908 0.93293 0.87995 0.87142 0.75256 0.83495 0.82412 0.81867 0.80206 0.79177 0.78099 0.90058 0.92873 0.96317 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.29 11.23 21.65 0.24 -54.05 16 2 C -0.05 -2.65 4.89 84.86 0.41 -2.24 16 3 Si 0.96 44.68 29.59 68.60 2.03 46.71 16 4 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.26 -14.56 9.54 84.03 0.80 -13.76 16 8 H 0.06 3.31 7.89 -2.91 -0.02 3.28 16 9 N -0.61 -30.46 2.94 -699.85 -2.06 -32.52 16 10 C 0.18 8.41 5.37 86.27 0.46 8.87 16 11 C -0.09 -3.15 5.36 30.61 0.16 -2.98 16 12 C -0.11 -3.66 1.94 -52.17 -0.10 -3.76 16 13 C -0.17 -4.56 9.87 30.56 0.30 -4.26 16 14 C 0.08 2.41 6.14 44.95 0.28 2.69 16 15 H 0.12 3.88 7.40 -2.39 -0.02 3.86 16 16 N -0.68 -18.18 5.33 -445.95 -2.38 -20.56 16 17 C 0.59 18.01 7.82 86.68 0.68 18.69 16 18 O -0.58 -22.19 16.48 -4.02 -0.07 -22.26 16 19 C -0.19 -5.02 6.12 -20.15 -0.12 -5.14 16 20 C -0.17 -4.28 10.78 22.94 0.25 -4.03 16 21 C 0.02 0.40 6.70 38.90 0.26 0.66 16 22 C -0.10 -1.42 10.11 22.47 0.23 -1.19 16 23 C -0.12 -1.15 10.07 22.33 0.22 -0.93 16 24 C -0.13 -1.05 9.97 22.06 0.22 -0.83 16 25 C 0.02 0.25 10.89 82.97 0.90 1.15 16 26 N -0.34 -6.21 2.92 -345.07 -1.01 -7.22 16 27 C -0.01 -0.11 11.09 84.14 0.93 0.82 16 28 C -0.09 -3.00 5.83 30.77 0.18 -2.82 16 29 C 0.15 6.09 6.52 86.43 0.56 6.65 16 30 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 31 H 0.06 2.99 5.94 -2.39 -0.01 2.97 16 32 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 33 H 0.07 2.11 6.75 -2.38 -0.02 2.10 16 34 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 37 H 0.41 8.99 6.01 -92.71 -0.56 8.43 16 38 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 39 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 40 H 0.16 0.54 8.06 -2.91 -0.02 0.52 16 41 H 0.18 0.19 8.06 -2.91 -0.02 0.17 16 42 H 0.19 0.95 8.06 -2.91 -0.02 0.93 16 43 H 0.20 2.66 7.42 -2.91 -0.02 2.64 16 44 H 0.08 2.32 8.10 -2.39 -0.02 2.30 16 45 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 46 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.05 2.13 7.92 -2.39 -0.02 2.11 16 Total: -1.00 -75.03 383.68 3.82 -71.21 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 0.43 Total: 21.11 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 6.63 Total: -2.41 kcal Atomic # 7 Polarization: -109.15 SS G_CDS: -5.20 Total: -114.35 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.07 Total: -22.26 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -75.03 3.82 -71.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016862356.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.963 kcal (2) G-P(sol) polarization free energy of solvation -75.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds