Wall clock time and date at job start Tue Mar 31 2020 22:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86806 * 119.99848 * 2 1 4 4 H 1.48498 * 109.47039 * 269.99946 * 3 2 1 5 5 H 1.48501 * 109.46821 * 30.00007 * 3 2 1 6 6 H 1.48506 * 109.47114 * 150.00006 * 3 2 1 7 7 C 1.38814 * 120.00451 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99890 * 0.02562 * 7 2 1 9 9 N 1.36934 * 120.00156 * 179.72385 * 7 2 1 10 10 C 1.46500 * 120.00117 * 180.27359 * 9 7 2 11 11 H 1.08998 * 110.47608 * 32.33875 * 10 9 7 12 12 C 1.55057 * 110.53848 * 269.51911 * 10 9 7 13 13 C 1.55052 * 102.11067 * 201.32711 * 12 10 9 14 14 C 1.54320 * 103.93744 * 40.05861 * 13 12 10 15 15 H 1.08998 * 112.35927 * 97.60407 * 14 13 12 16 16 C 1.53776 * 109.06556 * 222.03222 * 14 13 12 17 17 N 1.47210 * 106.38140 * 132.42535 * 16 14 13 18 18 C 1.34777 * 126.70209 * 148.70433 * 17 16 14 19 19 O 1.21785 * 120.00118 * 175.66464 * 18 17 16 20 20 C 1.46202 * 120.00055 * 355.65710 * 18 17 16 21 21 C 1.41740 * 126.79722 * 34.26001 * 20 18 17 22 22 C 1.34524 * 107.77641 * 179.97438 * 21 20 18 23 23 N 1.36954 * 109.60152 * 359.97438 * 22 21 20 24 24 C 1.36706 * 131.34584 * 180.02562 * 23 22 21 25 25 C 1.35003 * 120.75221 * 180.02562 * 24 23 22 26 26 C 1.40304 * 120.38098 * 359.95186 * 25 24 23 27 27 C 1.36344 * 119.45723 * 0.02733 * 26 25 24 28 28 C 1.36942 * 108.74202 * 359.75603 * 23 22 21 29 29 C 1.47215 * 106.59909 * 328.71814 * 17 16 14 30 30 C 1.53783 * 106.37635 * 31.28246 * 29 17 16 31 31 H 1.08998 * 111.70789 * 103.61945 * 30 29 17 32 32 H 0.96993 * 120.00255 * 0.02562 * 1 2 3 33 33 H 0.97004 * 120.00037 * 0.28207 * 9 7 2 34 34 H 1.08989 * 110.90144 * 319.53487 * 12 10 9 35 35 H 1.09007 * 110.89633 * 83.12719 * 12 10 9 36 36 H 1.09001 * 110.53510 * 281.44854 * 13 12 10 37 37 H 1.08997 * 110.65213 * 158.73045 * 13 12 10 38 38 H 1.08998 * 110.07356 * 13.19200 * 16 14 13 39 39 H 1.08997 * 110.11968 * 251.67732 * 16 14 13 40 40 H 1.07996 * 126.11015 * 359.95520 * 21 20 18 41 41 H 1.08001 * 125.19870 * 180.02562 * 22 21 20 42 42 H 1.07996 * 119.62314 * 359.97339 * 24 23 22 43 43 H 1.08005 * 119.80891 * 179.97438 * 25 24 23 44 44 H 1.07998 * 120.27320 * 179.97438 * 26 25 24 45 45 H 1.07998 * 120.33604 * 179.97438 * 27 26 25 46 46 H 1.09004 * 110.07505 * 272.05515 * 29 17 16 47 47 H 1.08996 * 110.12256 * 150.53297 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2020 -0.0052 10 6 4.1122 -2.4707 -0.0107 11 1 3.5534 -3.2313 -0.5560 12 6 4.4008 -2.9385 1.4392 13 6 5.5944 -3.9073 1.2369 14 6 6.4664 -3.2059 0.1743 15 1 7.2918 -2.6486 0.6173 16 6 6.9643 -4.2519 -0.8370 17 7 6.7154 -3.6882 -2.1739 18 6 7.4455 -3.9012 -3.2866 19 8 7.0833 -3.4340 -4.3513 20 6 8.6725 -4.6930 -3.2154 21 6 8.9172 -5.8056 -2.3720 22 6 10.1650 -6.2426 -2.6203 23 7 10.7408 -5.4631 -3.5880 24 6 11.9772 -5.5113 -4.1693 25 6 12.3280 -4.6197 -5.1204 26 6 11.4255 -3.6264 -5.5295 27 6 10.1890 -3.5676 -4.9580 28 6 9.8410 -4.5060 -3.9751 29 6 5.5136 -2.8460 -2.0581 30 6 5.5146 -2.2834 -0.6269 31 1 5.8286 -1.2398 -0.6041 32 1 -0.4850 0.8400 -0.0004 33 1 3.8646 -0.3619 -0.0055 34 1 4.6858 -2.0966 2.0700 35 1 3.5411 -3.4625 1.8571 36 1 5.2456 -4.8722 0.8690 37 1 6.1503 -4.0317 2.1662 38 1 6.4114 -5.1832 -0.7148 39 1 8.0308 -4.4294 -0.6985 40 1 8.2256 -6.2269 -1.6575 41 1 10.6399 -7.0806 -2.1318 42 1 12.6815 -6.2707 -3.8636 43 1 13.3090 -4.6716 -5.5692 44 1 11.7081 -2.9138 -6.2902 45 1 9.4832 -2.8086 -5.2619 46 1 4.6188 -3.4461 -2.2236 47 1 5.5559 -2.0308 -2.7805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026308545.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:33 Heat of formation + Delta-G solvation = 64.346658 kcal Electronic energy + Delta-G solvation = -28973.407274 eV Core-core repulsion = 25122.429783 eV Total energy + Delta-G solvation = -3850.977491 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.57503 -40.18751 -38.24842 -36.87664 -35.20551 -33.39489 -33.26409 -31.21897 -30.57737 -29.65302 -28.73782 -28.03400 -25.30519 -24.28930 -23.98291 -22.60114 -22.14544 -21.61432 -20.27924 -19.28981 -19.20571 -17.90816 -17.42533 -16.69040 -16.64188 -16.09452 -15.74994 -15.59862 -15.24926 -15.05292 -14.63551 -14.20837 -14.11784 -13.90620 -13.51610 -13.14675 -13.08844 -12.66536 -12.57580 -12.46152 -12.12595 -12.04313 -11.97519 -11.86149 -11.65834 -11.31951 -10.87803 -10.79712 -10.71408 -10.61577 -10.39715 -10.32735 -10.28658 -9.95691 -9.73654 -9.55697 -8.99014 -8.87434 -8.53913 -7.64602 -7.23145 -5.74575 -3.09973 0.42269 0.92078 2.17144 2.28736 2.97903 3.15711 3.40160 3.43290 3.48150 3.48848 4.10550 4.41658 4.45734 4.50252 4.58460 4.61741 4.67755 4.79622 4.85797 4.92483 5.12911 5.28989 5.32328 5.37424 5.39148 5.49818 5.51654 5.56375 5.60358 5.70341 5.81069 5.84611 5.87700 5.93848 5.95092 5.99764 6.03697 6.17305 6.21892 6.28262 6.34600 6.44560 6.48364 6.55063 6.62818 6.75956 6.88810 6.95300 7.71965 8.01762 8.36050 8.44736 9.22930 9.95650 10.15023 11.43765 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019682 B = 0.002551 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.250595 B =10972.956887 C =11811.785293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.005 3.995 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.090 0.910 9 N -0.745 5.745 10 C 0.189 3.811 11 H 0.067 0.933 12 C -0.142 4.142 13 C -0.116 4.116 14 C -0.099 4.099 15 H 0.084 0.916 16 C 0.104 3.896 17 N -0.611 5.611 18 C 0.607 3.393 19 O -0.550 6.550 20 C -0.227 4.227 21 C -0.107 4.107 22 C -0.065 4.065 23 N -0.339 5.339 24 C 0.046 3.954 25 C -0.142 4.142 26 C -0.120 4.120 27 C -0.080 4.080 28 C 0.105 3.895 29 C 0.116 3.884 30 C -0.110 4.110 31 H 0.085 0.915 32 H 0.259 0.741 33 H 0.361 0.639 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.155 0.845 41 H 0.173 0.827 42 H 0.163 0.837 43 H 0.147 0.853 44 H 0.138 0.862 45 H 0.150 0.850 46 H 0.074 0.926 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.633 -14.185 -4.565 32.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.191 4.191 3 Si 0.713 3.287 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.372 4.372 8 H 0.108 0.892 9 N -0.386 5.386 10 C 0.078 3.922 11 H 0.085 0.915 12 C -0.183 4.183 13 C -0.154 4.154 14 C -0.119 4.119 15 H 0.103 0.897 16 C -0.020 4.020 17 N -0.344 5.344 18 C 0.397 3.603 19 O -0.429 6.429 20 C -0.237 4.237 21 C -0.129 4.129 22 C -0.190 4.190 23 N -0.003 5.003 24 C -0.075 4.075 25 C -0.163 4.163 26 C -0.141 4.141 27 C -0.098 4.098 28 C -0.004 4.004 29 C -0.006 4.006 30 C -0.131 4.131 31 H 0.104 0.896 32 H 0.069 0.931 33 H 0.194 0.806 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.173 0.827 41 H 0.190 0.810 42 H 0.181 0.819 43 H 0.165 0.835 44 H 0.156 0.844 45 H 0.168 0.832 46 H 0.092 0.908 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 28.432 -14.131 -5.242 32.180 hybrid contribution 0.621 1.157 0.144 1.321 sum 29.053 -12.975 -5.098 32.224 Atomic orbital electron populations 1.69694 1.05111 1.25797 1.57552 1.24668 0.95214 0.97183 1.02043 0.86573 0.79193 0.85077 0.77821 1.21053 1.21828 1.20327 1.19073 0.80554 0.94687 1.42929 0.89176 1.42804 1.04063 1.01891 1.89855 1.21239 0.88724 0.89302 0.92918 0.91470 1.23254 0.96529 0.98208 1.00276 1.22486 0.96786 0.98593 0.97532 1.22557 0.97949 0.95861 0.95544 0.89718 1.22445 1.01255 0.96586 0.81664 1.48389 1.28673 1.48463 1.08837 1.16667 0.81797 0.79440 0.82367 1.90818 1.71359 1.52719 1.28020 1.19274 0.95019 1.04002 1.05385 1.21146 0.95535 0.96450 0.99722 1.21687 0.95854 1.02398 0.99073 1.41497 1.10276 1.22190 1.26304 1.21676 0.86112 1.02194 0.97475 1.20782 1.01345 0.95910 0.98214 1.21109 0.93280 0.99036 1.00644 1.20795 0.97249 0.97697 0.94086 1.18554 0.89987 0.92912 0.98958 1.22166 0.86793 0.94376 0.97252 1.22950 0.97304 0.99326 0.93475 0.89625 0.93087 0.80597 0.91718 0.91687 0.91462 0.92092 0.91204 0.90418 0.82708 0.80952 0.81948 0.83496 0.84441 0.83205 0.90814 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.39 13.97 55.49 0.78 -28.62 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 3 Si 0.88 22.23 27.73 -169.99 -4.71 17.51 16 4 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 7 C -0.24 -6.76 10.44 -15.06 -0.16 -6.91 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 9 N -0.74 -17.24 5.01 -51.71 -0.26 -17.50 16 10 C 0.19 3.46 3.04 -66.15 -0.20 3.26 16 11 H 0.07 1.30 7.13 -51.93 -0.37 0.93 16 12 C -0.14 -2.28 6.60 -24.56 -0.16 -2.44 16 13 C -0.12 -1.38 6.35 -24.96 -0.16 -1.54 16 14 C -0.10 -1.21 3.91 -88.53 -0.35 -1.56 16 15 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 16 C 0.10 1.17 5.13 -3.25 -0.02 1.15 16 17 N -0.61 -8.91 3.32 -173.29 -0.58 -9.49 16 18 C 0.61 9.74 7.74 -13.06 -0.10 9.64 16 19 O -0.55 -10.70 16.85 5.11 0.09 -10.61 16 20 C -0.23 -3.02 5.72 -104.46 -0.60 -3.62 16 21 C -0.11 -1.07 8.77 -39.56 -0.35 -1.41 16 22 C -0.06 -0.54 11.53 -16.58 -0.19 -0.73 16 23 N -0.34 -3.20 2.92 -60.81 -0.18 -3.37 16 24 C 0.05 0.30 10.89 -16.53 -0.18 0.12 16 25 C -0.14 -0.86 9.98 -39.95 -0.40 -1.25 16 26 C -0.12 -0.94 10.09 -39.49 -0.40 -1.33 16 27 C -0.08 -0.88 9.89 -39.50 -0.39 -1.27 16 28 C 0.10 1.28 6.69 -83.91 -0.56 0.72 16 29 C 0.12 1.87 6.52 -3.24 -0.02 1.85 16 30 C -0.11 -1.70 3.61 -88.52 -0.32 -2.02 16 31 H 0.09 1.38 7.80 -51.93 -0.41 0.98 16 32 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 33 H 0.36 8.29 5.47 -40.82 -0.22 8.07 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 36 H 0.07 0.74 7.19 -51.93 -0.37 0.37 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.71 7.06 -51.93 -0.37 0.34 16 39 H 0.08 0.76 6.08 -51.93 -0.32 0.45 16 40 H 0.16 1.24 6.75 -52.49 -0.35 0.88 16 41 H 0.17 0.81 8.06 -52.49 -0.42 0.38 16 42 H 0.16 0.47 8.06 -52.49 -0.42 0.04 16 43 H 0.15 0.41 8.06 -52.48 -0.42 -0.01 16 44 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 45 H 0.15 1.77 7.74 -52.49 -0.41 1.36 16 46 H 0.07 1.23 7.13 -51.93 -0.37 0.86 16 47 H 0.08 1.36 7.97 -51.93 -0.41 0.95 16 LS Contribution 374.41 15.07 5.64 5.64 Total: -1.00 -35.58 374.41 -10.44 -46.02 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -6.57 Total: 7.73 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -4.64 Total: -7.31 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: -0.24 Total: -58.98 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.09 Total: -10.61 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.71 Total: 17.51 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.58 -10.44 -46.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026308545.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.364 kcal (2) G-P(sol) polarization free energy of solvation -35.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds