Wall clock time and date at job start Tue Mar 31 2020 22:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86806 * 119.99848 * 2 1 4 4 H 1.48498 * 109.47039 * 269.99946 * 3 2 1 5 5 H 1.48501 * 109.46821 * 30.00007 * 3 2 1 6 6 H 1.48506 * 109.47114 * 150.00006 * 3 2 1 7 7 C 1.38814 * 120.00451 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99890 * 0.02562 * 7 2 1 9 9 N 1.36934 * 120.00156 * 179.72385 * 7 2 1 10 10 C 1.46500 * 120.00117 * 180.27359 * 9 7 2 11 11 H 1.08998 * 110.47608 * 32.33875 * 10 9 7 12 12 C 1.55057 * 110.53848 * 269.51911 * 10 9 7 13 13 C 1.55052 * 102.11067 * 201.32711 * 12 10 9 14 14 C 1.54320 * 103.93744 * 40.05861 * 13 12 10 15 15 H 1.08998 * 112.35927 * 97.60407 * 14 13 12 16 16 C 1.53776 * 109.06556 * 222.03222 * 14 13 12 17 17 N 1.47210 * 106.38140 * 132.42535 * 16 14 13 18 18 C 1.34777 * 126.70209 * 148.70433 * 17 16 14 19 19 O 1.21785 * 120.00118 * 175.66464 * 18 17 16 20 20 C 1.46202 * 120.00055 * 355.65710 * 18 17 16 21 21 C 1.41740 * 126.79722 * 34.26001 * 20 18 17 22 22 C 1.34524 * 107.77641 * 179.97438 * 21 20 18 23 23 N 1.36954 * 109.60152 * 359.97438 * 22 21 20 24 24 C 1.36706 * 131.34584 * 180.02562 * 23 22 21 25 25 C 1.35003 * 120.75221 * 180.02562 * 24 23 22 26 26 C 1.40304 * 120.38098 * 359.95186 * 25 24 23 27 27 C 1.36344 * 119.45723 * 0.02733 * 26 25 24 28 28 C 1.36942 * 108.74202 * 359.75603 * 23 22 21 29 29 C 1.47215 * 106.59909 * 328.71814 * 17 16 14 30 30 C 1.53783 * 106.37635 * 31.28246 * 29 17 16 31 31 H 1.08998 * 111.70789 * 103.61945 * 30 29 17 32 32 H 0.96993 * 120.00255 * 0.02562 * 1 2 3 33 33 H 0.97004 * 120.00037 * 0.28207 * 9 7 2 34 34 H 1.08989 * 110.90144 * 319.53487 * 12 10 9 35 35 H 1.09007 * 110.89633 * 83.12719 * 12 10 9 36 36 H 1.09001 * 110.53510 * 281.44854 * 13 12 10 37 37 H 1.08997 * 110.65213 * 158.73045 * 13 12 10 38 38 H 1.08998 * 110.07356 * 13.19200 * 16 14 13 39 39 H 1.08997 * 110.11968 * 251.67732 * 16 14 13 40 40 H 1.07996 * 126.11015 * 359.95520 * 21 20 18 41 41 H 1.08001 * 125.19870 * 180.02562 * 22 21 20 42 42 H 1.07996 * 119.62314 * 359.97339 * 24 23 22 43 43 H 1.08005 * 119.80891 * 179.97438 * 25 24 23 44 44 H 1.07998 * 120.27320 * 179.97438 * 26 25 24 45 45 H 1.07998 * 120.33604 * 179.97438 * 27 26 25 46 46 H 1.09004 * 110.07505 * 272.05515 * 29 17 16 47 47 H 1.08996 * 110.12256 * 150.53297 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2020 -0.0052 10 6 4.1122 -2.4707 -0.0107 11 1 3.5534 -3.2313 -0.5560 12 6 4.4008 -2.9385 1.4392 13 6 5.5944 -3.9073 1.2369 14 6 6.4664 -3.2059 0.1743 15 1 7.2918 -2.6486 0.6173 16 6 6.9643 -4.2519 -0.8370 17 7 6.7154 -3.6882 -2.1739 18 6 7.4455 -3.9012 -3.2866 19 8 7.0833 -3.4340 -4.3513 20 6 8.6725 -4.6930 -3.2154 21 6 8.9172 -5.8056 -2.3720 22 6 10.1650 -6.2426 -2.6203 23 7 10.7408 -5.4631 -3.5880 24 6 11.9772 -5.5113 -4.1693 25 6 12.3280 -4.6197 -5.1204 26 6 11.4255 -3.6264 -5.5295 27 6 10.1890 -3.5676 -4.9580 28 6 9.8410 -4.5060 -3.9751 29 6 5.5136 -2.8460 -2.0581 30 6 5.5146 -2.2834 -0.6269 31 1 5.8286 -1.2398 -0.6041 32 1 -0.4850 0.8400 -0.0004 33 1 3.8646 -0.3619 -0.0055 34 1 4.6858 -2.0966 2.0700 35 1 3.5411 -3.4625 1.8571 36 1 5.2456 -4.8722 0.8690 37 1 6.1503 -4.0317 2.1662 38 1 6.4114 -5.1832 -0.7148 39 1 8.0308 -4.4294 -0.6985 40 1 8.2256 -6.2269 -1.6575 41 1 10.6399 -7.0806 -2.1318 42 1 12.6815 -6.2707 -3.8636 43 1 13.3090 -4.6716 -5.5692 44 1 11.7081 -2.9138 -6.2902 45 1 9.4832 -2.8086 -5.2619 46 1 4.6188 -3.4461 -2.2236 47 1 5.5559 -2.0308 -2.7805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026308545.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:32 Heat of formation + Delta-G solvation = 42.069071 kcal Electronic energy + Delta-G solvation = -28974.373302 eV Core-core repulsion = 25122.429783 eV Total energy + Delta-G solvation = -3851.943520 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.24854 -41.36819 -39.48659 -37.52398 -36.74828 -35.02802 -33.99926 -33.10607 -31.48479 -30.65852 -30.04812 -28.83463 -26.80310 -25.34383 -24.62935 -24.32099 -23.10673 -22.31749 -21.64953 -20.63628 -20.21083 -19.41259 -18.65528 -17.68736 -17.37797 -16.99623 -16.81838 -16.66216 -16.35296 -16.07438 -15.87695 -15.41760 -15.25803 -15.06660 -14.69435 -14.66692 -14.18121 -14.04167 -13.91006 -13.50467 -13.37418 -13.15653 -13.05699 -12.83159 -12.61406 -12.54765 -12.30134 -12.19744 -12.10590 -11.92290 -11.81728 -11.56541 -11.49345 -11.45178 -11.35275 -11.01271 -10.86464 -9.73839 -9.63013 -9.26808 -8.34418 -8.01877 -5.34113 -0.22578 0.26401 1.34550 1.36146 1.39964 1.46404 1.63561 2.07393 2.26621 2.48121 2.60660 3.27038 3.36465 3.49644 3.61872 3.65383 3.83517 3.87816 3.95925 4.00865 4.07435 4.19106 4.24231 4.37311 4.42058 4.47665 4.49902 4.59849 4.62083 4.71038 4.76610 4.83883 4.86375 4.93090 4.93829 5.02983 5.07447 5.16864 5.23407 5.29896 5.31524 5.37658 5.40613 5.48037 5.58136 5.67709 5.78819 5.85505 6.22964 6.32975 6.60615 7.08684 7.19205 7.86031 8.03895 9.19843 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019682 B = 0.002551 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.250595 B =10972.956887 C =11811.785293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.066 4.066 3 Si 0.952 3.048 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.250 1.250 7 C -0.224 4.224 8 H 0.057 0.943 9 N -0.750 5.750 10 C 0.177 3.823 11 H 0.050 0.950 12 C -0.138 4.138 13 C -0.100 4.100 14 C -0.089 4.089 15 H 0.105 0.895 16 C 0.105 3.895 17 N -0.611 5.611 18 C 0.599 3.401 19 O -0.605 6.605 20 C -0.275 4.275 21 C -0.113 4.113 22 C -0.053 4.053 23 N -0.341 5.341 24 C 0.053 3.947 25 C -0.148 4.148 26 C -0.095 4.095 27 C -0.133 4.133 28 C 0.090 3.910 29 C 0.118 3.882 30 C -0.102 4.102 31 H 0.080 0.920 32 H 0.257 0.743 33 H 0.364 0.636 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.173 0.827 41 H 0.217 0.783 42 H 0.210 0.790 43 H 0.188 0.812 44 H 0.158 0.842 45 H 0.121 0.879 46 H 0.059 0.941 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.291 -16.384 -3.237 38.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.257 4.257 3 Si 0.780 3.220 4 H -0.211 1.211 5 H -0.222 1.222 6 H -0.174 1.174 7 C -0.355 4.355 8 H 0.075 0.925 9 N -0.392 5.392 10 C 0.069 3.931 11 H 0.068 0.932 12 C -0.178 4.178 13 C -0.138 4.138 14 C -0.108 4.108 15 H 0.123 0.877 16 C -0.016 4.016 17 N -0.342 5.342 18 C 0.393 3.607 19 O -0.488 6.488 20 C -0.284 4.284 21 C -0.134 4.134 22 C -0.177 4.177 23 N -0.005 5.005 24 C -0.067 4.067 25 C -0.168 4.168 26 C -0.117 4.117 27 C -0.152 4.152 28 C -0.020 4.020 29 C -0.005 4.005 30 C -0.122 4.122 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.197 0.803 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.120 0.880 40 H 0.190 0.810 41 H 0.234 0.766 42 H 0.226 0.774 43 H 0.206 0.794 44 H 0.176 0.824 45 H 0.139 0.861 46 H 0.078 0.922 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 34.156 -16.392 -3.862 38.083 hybrid contribution -1.016 1.716 -0.400 2.034 sum 33.141 -14.676 -4.262 36.495 Atomic orbital electron populations 1.69873 1.07070 1.26517 1.60110 1.25470 0.96084 1.01111 1.03056 0.85452 0.78813 0.79979 0.77800 1.21124 1.22225 1.17425 1.19028 0.82633 0.93324 1.40516 0.92473 1.42826 1.02474 1.03885 1.90030 1.21498 0.89609 0.86951 0.95031 0.93156 1.23098 0.98130 0.99057 0.97551 1.22434 0.94795 0.97717 0.98855 1.22579 0.97582 0.95332 0.95309 0.87691 1.22655 1.03089 0.96617 0.79261 1.48436 1.27705 1.48061 1.10028 1.17276 0.82594 0.79106 0.81773 1.90764 1.72788 1.55217 1.30047 1.19152 0.94461 1.06128 1.08661 1.21382 0.96828 0.95457 0.99683 1.22344 0.95149 1.02366 0.97835 1.41796 1.10828 1.21430 1.26458 1.22589 0.85249 1.02600 0.96250 1.21298 1.02501 0.94843 0.98128 1.21521 0.91951 0.99004 0.99177 1.20711 0.98780 0.98919 0.96814 1.18671 0.90615 0.93793 0.98952 1.21975 0.87458 0.93823 0.97287 1.22793 0.96276 0.99958 0.93202 0.90129 0.93464 0.80285 0.92133 0.93001 0.90151 0.88923 0.89421 0.88008 0.80973 0.76626 0.77363 0.79435 0.82406 0.86113 0.92236 0.93146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.60 13.97 21.65 0.30 -64.30 16 2 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 3 Si 0.95 46.99 27.73 68.60 1.90 48.89 16 4 H -0.28 -14.00 7.11 99.48 0.71 -13.29 16 5 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 6 H -0.25 -11.06 6.52 99.48 0.65 -10.41 16 7 C -0.22 -12.97 10.44 84.03 0.88 -12.09 16 8 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 9 N -0.75 -35.43 5.01 -317.50 -1.59 -37.02 16 10 C 0.18 6.62 3.04 46.14 0.14 6.76 16 11 H 0.05 2.04 7.13 -2.39 -0.02 2.02 16 12 C -0.14 -4.28 6.60 32.00 0.21 -4.07 16 13 C -0.10 -2.05 6.35 31.74 0.20 -1.85 16 14 C -0.09 -1.92 3.91 -9.44 -0.04 -1.96 16 15 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 16 C 0.11 2.14 5.13 86.51 0.44 2.58 16 17 N -0.61 -18.25 3.32 -820.34 -2.72 -20.98 16 18 C 0.60 20.44 7.74 86.31 0.67 21.11 16 19 O -0.60 -25.97 16.85 -4.62 -0.08 -26.04 16 20 C -0.27 -7.35 5.72 -19.76 -0.11 -7.46 16 21 C -0.11 -1.98 8.77 22.28 0.20 -1.78 16 22 C -0.05 -0.66 11.53 83.04 0.96 0.29 16 23 N -0.34 -5.37 2.92 -346.29 -1.01 -6.38 16 24 C 0.05 0.44 10.89 83.19 0.91 1.34 16 25 C -0.15 -1.16 9.98 22.03 0.22 -0.94 16 26 C -0.10 -1.34 10.09 22.33 0.23 -1.11 16 27 C -0.13 -3.09 9.89 22.33 0.22 -2.86 16 28 C 0.09 2.18 6.69 39.43 0.26 2.45 16 29 C 0.12 4.02 6.52 86.51 0.56 4.59 16 30 C -0.10 -3.15 3.61 -9.44 -0.03 -3.18 16 31 H 0.08 2.59 7.80 -2.39 -0.02 2.57 16 32 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 33 H 0.36 16.67 5.47 -92.71 -0.51 16.16 16 34 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 36 H 0.08 1.49 7.19 -2.39 -0.02 1.47 16 37 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.09 1.50 7.06 -2.39 -0.02 1.48 16 39 H 0.10 1.65 6.08 -2.39 -0.01 1.64 16 40 H 0.17 2.19 6.75 -2.91 -0.02 2.17 16 41 H 0.22 0.66 8.06 -2.91 -0.02 0.64 16 42 H 0.21 -0.27 8.06 -2.91 -0.02 -0.29 16 43 H 0.19 -0.07 8.06 -2.91 -0.02 -0.09 16 44 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 45 H 0.12 3.34 7.74 -2.91 -0.02 3.32 16 46 H 0.06 2.16 7.13 -2.38 -0.02 2.14 16 47 H 0.05 1.95 7.97 -2.39 -0.02 1.93 16 Total: -1.00 -86.39 374.41 3.60 -82.78 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 0.43 Total: 24.75 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 6.38 Total: -1.70 kcal Atomic # 7 Polarization: -123.65 SS G_CDS: -5.02 Total: -128.68 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.08 Total: -26.04 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 1.90 Total: 48.89 kcal Total: -86.39 3.60 -82.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026308545.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.851 kcal (2) G-P(sol) polarization free energy of solvation -86.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds