Wall clock time and date at job start Tue Mar 31 2020 22:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99810 * 2 1 4 4 H 1.48498 * 109.47311 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47192 * 300.00244 * 3 2 1 6 6 H 1.48504 * 109.46940 * 59.99829 * 3 2 1 7 7 C 1.38814 * 120.00311 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99948 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99752 * 179.97438 * 9 7 2 11 11 H 1.09001 * 110.47185 * 32.35937 * 10 9 7 12 12 C 1.56008 * 110.64578 * 269.63857 * 10 9 7 13 13 C 1.58427 * 105.91139 * 234.40387 * 12 10 9 14 14 C 1.51557 * 100.86006 * 334.57604 * 13 12 10 15 15 H 1.09002 * 111.10863 * 288.31297 * 14 13 12 16 16 C 1.51511 * 123.36380 * 152.52702 * 14 13 12 17 17 N 1.49630 * 102.48967 * 207.62567 * 16 14 13 18 18 C 1.34777 * 126.07305 * 205.65236 * 17 16 14 19 19 O 1.21592 * 119.99941 * 183.69129 * 18 17 16 20 20 C 1.47582 * 119.99942 * 3.41473 * 18 17 16 21 21 C 1.40234 * 119.83125 * 332.65590 * 20 18 17 22 22 C 1.36202 * 120.37611 * 179.73632 * 21 20 18 23 23 C 1.39919 * 119.96200 * 0.55218 * 22 21 20 24 24 C 1.46252 * 133.84145 * 179.72478 * 23 22 21 25 25 C 1.34463 * 107.03263 * 179.97438 * 24 23 22 26 26 N 1.36564 * 109.97435 * 359.97438 * 25 24 23 27 27 H 0.96995 * 125.06757 * 180.02562 * 26 25 24 28 28 C 1.37825 * 109.86236 * 0.02562 * 26 25 24 29 29 C 1.38687 * 133.37142 * 179.97438 * 28 26 25 30 30 C 1.49282 * 107.85328 * 25.91798 * 17 16 14 31 31 C 1.49648 * 104.71536 * 5.97888 * 30 17 16 32 32 H 1.09002 * 108.29676 * 78.90084 * 31 30 17 33 33 H 0.96992 * 120.00107 * 359.97438 * 1 2 3 34 34 H 0.96998 * 119.99783 * 359.97438 * 9 7 2 35 35 H 1.08999 * 110.18580 * 353.42722 * 12 10 9 36 36 H 1.08994 * 110.18732 * 115.20352 * 12 10 9 37 37 H 1.09003 * 110.98792 * 216.94681 * 13 12 10 38 38 H 1.09010 * 111.83767 * 92.55968 * 13 12 10 39 39 H 1.08997 * 110.80272 * 89.38357 * 16 14 13 40 40 H 1.08995 * 110.97034 * 325.94969 * 16 14 13 41 41 H 1.08001 * 119.81703 * 359.97438 * 21 20 18 42 42 H 1.08003 * 120.01963 * 180.25439 * 22 21 20 43 43 H 1.07995 * 126.48479 * 0.02562 * 24 23 22 44 44 H 1.07993 * 125.01252 * 180.02562 * 25 24 23 45 45 H 1.07997 * 120.16389 * 359.97438 * 29 28 26 46 46 H 1.09002 * 110.39682 * 124.92332 * 30 17 16 47 47 H 1.09009 * 110.39473 * 247.31970 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 2.9959 -3.5555 0.5471 12 6 2.3254 -4.1377 -1.4593 13 6 1.7436 -5.6087 -1.5453 14 6 1.8250 -6.0333 -0.0926 15 1 2.8586 -6.2014 0.2099 16 6 0.9003 -7.0604 0.5283 17 7 0.8723 -6.6438 1.9652 18 6 0.6172 -7.4446 3.0188 19 8 0.5565 -6.9750 4.1387 20 6 0.4054 -8.8905 2.8124 21 6 -0.0958 -9.3543 1.5876 22 6 -0.2905 -10.6868 1.3833 23 6 -0.0006 -11.5998 2.4031 24 6 -0.0954 -13.0548 2.5174 25 6 0.3290 -13.3815 3.7507 26 7 0.6879 -12.2550 4.4342 27 1 1.0254 -12.2387 5.3434 28 6 0.4989 -11.1449 3.6395 29 6 0.6996 -9.7870 3.8370 30 6 1.1706 -5.1823 2.0239 31 6 1.2204 -4.7467 0.5931 32 1 0.1974 -4.6315 0.2346 33 1 -0.4850 0.8400 0.0004 34 1 0.3557 -2.3880 0.0005 35 1 1.8108 -3.4897 -2.1689 36 1 3.3960 -4.1433 -1.6635 37 1 2.3723 -6.2412 -2.1721 38 1 0.7118 -5.6168 -1.8966 39 1 1.3115 -8.0644 0.4244 40 1 -0.0958 -7.0043 0.0895 41 1 -0.3252 -8.6514 0.8004 42 1 -0.6729 -11.0380 0.4363 43 1 -0.4402 -13.7377 1.7551 44 1 0.3794 -14.3866 4.1427 45 1 1.0814 -9.4264 4.7807 46 1 0.3796 -4.6542 2.5564 47 1 2.1337 -5.0102 2.5046 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026365492.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:03 Heat of formation + Delta-G solvation = 67.100253 kcal Electronic energy + Delta-G solvation = -28618.640726 eV Core-core repulsion = 24767.782640 eV Total energy + Delta-G solvation = -3850.858086 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.57867 -40.53039 -38.73538 -36.73264 -35.30809 -33.35042 -32.25779 -30.95422 -30.52520 -29.50727 -28.63408 -28.39813 -25.51703 -24.12633 -23.21633 -22.88087 -22.01283 -21.06425 -20.19817 -19.55501 -19.16048 -18.26197 -17.21848 -16.89835 -16.56535 -15.83992 -15.50801 -14.97074 -14.81974 -14.67076 -14.35752 -14.12151 -13.96907 -13.82475 -13.73200 -13.56470 -13.27364 -12.87030 -12.61195 -12.50939 -12.05315 -11.86553 -11.72754 -11.49777 -11.37498 -11.27362 -10.92092 -10.80591 -10.75862 -10.44969 -10.11708 -10.10554 -10.06156 -9.82259 -9.75751 -9.56015 -8.91487 -8.62988 -8.51341 -8.04008 -6.96996 -5.77031 -3.06084 0.59872 1.23910 2.28203 2.64910 2.93247 3.00417 3.43687 3.49574 3.51651 3.72288 4.14393 4.36317 4.50690 4.52690 4.58724 4.82366 4.92228 4.97131 5.05159 5.12692 5.24838 5.26744 5.33224 5.42171 5.44524 5.56592 5.61064 5.63708 5.71705 5.75683 5.90104 5.93169 6.01479 6.03447 6.08704 6.15571 6.21385 6.24970 6.33864 6.34598 6.40850 6.43211 6.52152 6.64908 6.79494 6.79997 7.05970 7.13515 7.55071 7.71388 8.19955 8.41192 9.52676 10.09315 10.43748 11.45447 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026893 B = 0.002187 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.894263 B =12802.488754 C =13419.589538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.720 5.720 10 C 0.198 3.802 11 H 0.056 0.944 12 C -0.142 4.142 13 C -0.101 4.101 14 C -0.128 4.128 15 H 0.086 0.914 16 C 0.110 3.890 17 N -0.617 5.617 18 C 0.573 3.427 19 O -0.542 6.542 20 C -0.106 4.106 21 C -0.125 4.125 22 C -0.080 4.080 23 C -0.090 4.090 24 C -0.211 4.211 25 C 0.057 3.943 26 N -0.593 5.593 27 H 0.417 0.583 28 C 0.082 3.918 29 C -0.066 4.066 30 C 0.134 3.866 31 C -0.120 4.120 32 H 0.076 0.924 33 H 0.255 0.745 34 H 0.384 0.616 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.141 0.859 42 H 0.128 0.872 43 H 0.148 0.852 44 H 0.172 0.828 45 H 0.131 0.869 46 H 0.077 0.923 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.192 -29.131 2.603 29.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.360 5.360 10 C 0.087 3.913 11 H 0.074 0.926 12 C -0.183 4.183 13 C -0.139 4.139 14 C -0.147 4.147 15 H 0.105 0.895 16 C -0.012 4.012 17 N -0.351 5.351 18 C 0.363 3.637 19 O -0.421 6.421 20 C -0.111 4.111 21 C -0.145 4.145 22 C -0.098 4.098 23 C -0.095 4.095 24 C -0.236 4.236 25 C -0.070 4.070 26 N -0.196 5.196 27 H 0.254 0.746 28 C -0.025 4.025 29 C -0.087 4.087 30 C 0.013 3.987 31 C -0.140 4.140 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.218 0.782 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.158 0.842 42 H 0.146 0.854 43 H 0.166 0.834 44 H 0.189 0.811 45 H 0.149 0.851 46 H 0.095 0.905 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.302 -28.772 3.427 29.004 hybrid contribution 0.231 0.868 0.414 0.989 sum 1.533 -27.904 3.841 28.209 Atomic orbital electron populations 1.69665 1.05097 1.25568 1.57661 1.24749 0.95506 0.97714 1.02967 0.86138 0.78807 0.84213 0.77152 1.20553 1.21922 1.21902 1.19293 0.91040 0.84081 1.42638 0.91078 1.42503 1.05693 0.99663 1.88137 1.19948 0.94168 0.84941 0.92273 0.92609 1.24154 0.99806 0.93804 1.00523 1.22211 1.01137 0.97220 0.93349 1.22606 0.99497 0.95236 0.97405 0.89536 1.22136 0.99684 0.98696 0.80658 1.49713 1.69297 1.09881 1.06175 1.17830 0.76842 0.85524 0.83538 1.90794 1.51978 1.76166 1.23121 1.19458 1.04266 0.92439 0.94889 1.21297 1.00381 0.96130 0.96661 1.20205 0.99736 0.91819 0.98060 1.19406 1.02677 0.93768 0.93636 1.21738 1.10940 0.93097 0.97794 1.21890 1.00991 0.90977 0.93124 1.41777 1.57800 1.04645 1.15339 0.74608 1.18065 1.04055 0.88395 0.91960 1.20005 1.00852 0.88694 0.99162 1.21010 1.01726 0.78638 0.97296 1.22094 1.01940 0.96218 0.93750 0.90570 0.93552 0.78152 0.90816 0.92645 0.92099 0.91407 0.89699 0.90557 0.84156 0.85384 0.83430 0.81123 0.85135 0.90455 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.91 13.06 55.49 0.72 -27.19 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.24 -6.50 9.96 -15.06 -0.15 -6.65 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.72 -17.40 5.11 -53.44 -0.27 -17.67 16 10 C 0.20 3.71 3.44 -67.95 -0.23 3.48 16 11 H 0.06 1.08 8.09 -51.93 -0.42 0.66 16 12 C -0.14 -2.29 6.80 -22.13 -0.15 -2.44 16 13 C -0.10 -1.24 6.78 -24.47 -0.17 -1.41 16 14 C -0.13 -1.59 3.08 -89.46 -0.28 -1.86 16 15 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 16 C 0.11 1.23 4.72 -3.05 -0.01 1.22 16 17 N -0.62 -8.89 3.42 -172.81 -0.59 -9.48 16 18 C 0.57 8.99 7.65 -12.45 -0.10 8.89 16 19 O -0.54 -10.42 17.00 5.28 0.09 -10.33 16 20 C -0.11 -1.37 5.72 -104.95 -0.60 -1.97 16 21 C -0.13 -1.33 7.85 -39.56 -0.31 -1.64 16 22 C -0.08 -0.76 10.03 -39.68 -0.40 -1.16 16 23 C -0.09 -0.91 6.37 -105.04 -0.67 -1.58 16 24 C -0.21 -1.62 11.08 -37.70 -0.42 -2.03 16 25 C 0.06 0.35 11.81 -16.78 -0.20 0.15 16 26 N -0.59 -4.24 6.07 -10.68 -0.06 -4.31 16 27 H 0.42 1.84 8.96 -40.82 -0.37 1.47 16 28 C 0.08 0.85 7.26 -84.00 -0.61 0.24 16 29 C -0.07 -0.78 9.60 -39.03 -0.37 -1.16 16 30 C 0.13 2.17 6.83 -4.16 -0.03 2.14 16 31 C -0.12 -1.90 2.17 -91.26 -0.20 -2.10 16 32 H 0.08 1.28 7.77 -51.93 -0.40 0.87 16 33 H 0.25 7.40 8.31 -40.82 -0.34 7.07 16 34 H 0.38 9.95 7.66 -40.82 -0.31 9.64 16 35 H 0.07 1.36 7.98 -51.93 -0.41 0.94 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.82 8.14 -51.92 -0.42 0.39 16 39 H 0.08 0.81 6.20 -51.93 -0.32 0.49 16 40 H 0.08 0.78 7.40 -51.93 -0.38 0.40 16 41 H 0.14 1.30 4.60 -52.49 -0.24 1.06 16 42 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 43 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 44 H 0.17 0.38 8.06 -52.49 -0.42 -0.04 16 45 H 0.13 1.52 7.86 -52.49 -0.41 1.10 16 46 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 47 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16 LS Contribution 377.89 15.07 5.69 5.69 Total: -1.00 -33.89 377.89 -11.06 -44.95 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -6.63 Total: 9.42 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -4.99 Total: -8.36 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -0.20 Total: -58.65 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.09 Total: -10.33 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.89 -11.06 -44.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026365492.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.047 kcal (2) G-P(sol) polarization free energy of solvation -33.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds