Wall clock time and date at job start Tue Mar 31 2020 22:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99810 * 2 1 4 4 H 1.48498 * 109.47311 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47192 * 300.00244 * 3 2 1 6 6 H 1.48504 * 109.46940 * 59.99829 * 3 2 1 7 7 C 1.38814 * 120.00311 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99948 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99752 * 179.97438 * 9 7 2 11 11 H 1.09001 * 110.47185 * 32.35937 * 10 9 7 12 12 C 1.56008 * 110.64578 * 269.63857 * 10 9 7 13 13 C 1.58427 * 105.91139 * 234.40387 * 12 10 9 14 14 C 1.51557 * 100.86006 * 334.57604 * 13 12 10 15 15 H 1.09002 * 111.10863 * 288.31297 * 14 13 12 16 16 C 1.51511 * 123.36380 * 152.52702 * 14 13 12 17 17 N 1.49630 * 102.48967 * 207.62567 * 16 14 13 18 18 C 1.34777 * 126.07305 * 205.65236 * 17 16 14 19 19 O 1.21592 * 119.99941 * 183.69129 * 18 17 16 20 20 C 1.47582 * 119.99942 * 3.41473 * 18 17 16 21 21 C 1.40234 * 119.83125 * 332.65590 * 20 18 17 22 22 C 1.36202 * 120.37611 * 179.73632 * 21 20 18 23 23 C 1.39919 * 119.96200 * 0.55218 * 22 21 20 24 24 C 1.46252 * 133.84145 * 179.72478 * 23 22 21 25 25 C 1.34463 * 107.03263 * 179.97438 * 24 23 22 26 26 N 1.36564 * 109.97435 * 359.97438 * 25 24 23 27 27 H 0.96995 * 125.06757 * 180.02562 * 26 25 24 28 28 C 1.37825 * 109.86236 * 0.02562 * 26 25 24 29 29 C 1.38687 * 133.37142 * 179.97438 * 28 26 25 30 30 C 1.49282 * 107.85328 * 25.91798 * 17 16 14 31 31 C 1.49648 * 104.71536 * 5.97888 * 30 17 16 32 32 H 1.09002 * 108.29676 * 78.90084 * 31 30 17 33 33 H 0.96992 * 120.00107 * 359.97438 * 1 2 3 34 34 H 0.96998 * 119.99783 * 359.97438 * 9 7 2 35 35 H 1.08999 * 110.18580 * 353.42722 * 12 10 9 36 36 H 1.08994 * 110.18732 * 115.20352 * 12 10 9 37 37 H 1.09003 * 110.98792 * 216.94681 * 13 12 10 38 38 H 1.09010 * 111.83767 * 92.55968 * 13 12 10 39 39 H 1.08997 * 110.80272 * 89.38357 * 16 14 13 40 40 H 1.08995 * 110.97034 * 325.94969 * 16 14 13 41 41 H 1.08001 * 119.81703 * 359.97438 * 21 20 18 42 42 H 1.08003 * 120.01963 * 180.25439 * 22 21 20 43 43 H 1.07995 * 126.48479 * 0.02562 * 24 23 22 44 44 H 1.07993 * 125.01252 * 180.02562 * 25 24 23 45 45 H 1.07997 * 120.16389 * 359.97438 * 29 28 26 46 46 H 1.09002 * 110.39682 * 124.92332 * 30 17 16 47 47 H 1.09009 * 110.39473 * 247.31970 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 2.9959 -3.5555 0.5471 12 6 2.3254 -4.1377 -1.4593 13 6 1.7436 -5.6087 -1.5453 14 6 1.8250 -6.0333 -0.0926 15 1 2.8586 -6.2014 0.2099 16 6 0.9003 -7.0604 0.5283 17 7 0.8723 -6.6438 1.9652 18 6 0.6172 -7.4446 3.0188 19 8 0.5565 -6.9750 4.1387 20 6 0.4054 -8.8905 2.8124 21 6 -0.0958 -9.3543 1.5876 22 6 -0.2905 -10.6868 1.3833 23 6 -0.0006 -11.5998 2.4031 24 6 -0.0954 -13.0548 2.5174 25 6 0.3290 -13.3815 3.7507 26 7 0.6879 -12.2550 4.4342 27 1 1.0254 -12.2387 5.3434 28 6 0.4989 -11.1449 3.6395 29 6 0.6996 -9.7870 3.8370 30 6 1.1706 -5.1823 2.0239 31 6 1.2204 -4.7467 0.5931 32 1 0.1974 -4.6315 0.2346 33 1 -0.4850 0.8400 0.0004 34 1 0.3557 -2.3880 0.0005 35 1 1.8108 -3.4897 -2.1689 36 1 3.3960 -4.1433 -1.6635 37 1 2.3723 -6.2412 -2.1721 38 1 0.7118 -5.6168 -1.8966 39 1 1.3115 -8.0644 0.4244 40 1 -0.0958 -7.0043 0.0895 41 1 -0.3252 -8.6514 0.8004 42 1 -0.6729 -11.0380 0.4363 43 1 -0.4402 -13.7377 1.7551 44 1 0.3794 -14.3866 4.1427 45 1 1.0814 -9.4264 4.7807 46 1 0.3796 -4.6542 2.5564 47 1 2.1337 -5.0102 2.5046 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026365492.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:02 Heat of formation + Delta-G solvation = 45.778866 kcal Electronic energy + Delta-G solvation = -28619.565291 eV Core-core repulsion = 24767.782640 eV Total energy + Delta-G solvation = -3851.782651 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.29778 -41.65371 -39.93633 -37.58507 -36.80743 -35.05029 -32.96510 -32.66809 -31.62981 -30.25979 -29.86466 -29.45870 -27.04585 -25.18576 -24.91362 -23.80794 -22.98661 -21.67796 -21.35651 -20.62422 -20.45177 -19.17116 -18.97701 -17.87835 -17.75132 -16.85372 -16.60613 -16.57985 -15.97526 -15.63132 -15.44075 -15.37237 -15.19227 -14.92882 -14.73999 -14.47815 -14.38570 -13.99785 -13.88251 -13.60582 -13.16794 -13.16168 -13.07878 -12.72837 -12.63954 -12.54172 -12.33151 -12.26435 -12.08313 -11.92446 -11.78716 -11.54613 -11.36556 -11.04590 -10.98598 -10.88559 -10.75991 -9.82978 -9.26254 -8.98224 -8.68571 -7.93304 -5.21020 -0.21740 0.48575 1.46718 1.47706 1.57258 1.57680 1.69196 1.98741 2.27487 2.56602 2.89396 2.98291 3.40822 3.46423 3.66584 3.77022 3.89254 3.97056 4.02318 4.16268 4.25965 4.30267 4.33014 4.38126 4.44002 4.52017 4.57369 4.63108 4.67907 4.71737 4.74725 4.77817 4.90728 4.98864 4.99304 5.03888 5.06298 5.17061 5.25572 5.33609 5.39065 5.49163 5.49663 5.54625 5.65265 5.70705 5.78911 6.11169 6.29266 6.40390 6.65761 7.00455 7.35087 8.11923 8.34100 9.30321 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026893 B = 0.002187 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.894263 B =12802.488754 C =13419.589538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.079 4.079 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.298 1.298 7 C -0.234 4.234 8 H 0.076 0.924 9 N -0.733 5.733 10 C 0.188 3.812 11 H 0.046 0.954 12 C -0.137 4.137 13 C -0.084 4.084 14 C -0.105 4.105 15 H 0.091 0.909 16 C 0.112 3.888 17 N -0.615 5.615 18 C 0.569 3.431 19 O -0.593 6.593 20 C -0.129 4.129 21 C -0.127 4.127 22 C -0.077 4.077 23 C -0.102 4.102 24 C -0.230 4.230 25 C 0.075 3.925 26 N -0.588 5.588 27 H 0.428 0.572 28 C 0.062 3.938 29 C -0.075 4.075 30 C 0.136 3.864 31 C -0.122 4.122 32 H 0.067 0.933 33 H 0.249 0.751 34 H 0.372 0.628 35 H 0.048 0.952 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.113 0.887 40 H 0.095 0.905 41 H 0.154 0.846 42 H 0.157 0.843 43 H 0.170 0.830 44 H 0.214 0.786 45 H 0.119 0.881 46 H 0.049 0.951 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.028 -33.162 1.076 33.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.271 4.271 3 Si 0.799 3.201 4 H -0.190 1.190 5 H -0.221 1.221 6 H -0.225 1.225 7 C -0.366 4.366 8 H 0.094 0.906 9 N -0.373 5.373 10 C 0.079 3.921 11 H 0.064 0.936 12 C -0.177 4.177 13 C -0.122 4.122 14 C -0.125 4.125 15 H 0.110 0.890 16 C -0.008 4.008 17 N -0.347 5.347 18 C 0.360 3.640 19 O -0.475 6.475 20 C -0.133 4.133 21 C -0.147 4.147 22 C -0.095 4.095 23 C -0.107 4.107 24 C -0.254 4.254 25 C -0.052 4.052 26 N -0.192 5.192 27 H 0.267 0.733 28 C -0.045 4.045 29 C -0.097 4.097 30 C 0.014 3.986 31 C -0.142 4.142 32 H 0.086 0.914 33 H 0.058 0.942 34 H 0.204 0.796 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.113 0.887 38 H 0.094 0.906 39 H 0.131 0.869 40 H 0.113 0.887 41 H 0.172 0.828 42 H 0.175 0.825 43 H 0.187 0.813 44 H 0.231 0.769 45 H 0.137 0.863 46 H 0.067 0.933 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.192 -32.864 1.873 32.990 hybrid contribution 0.012 1.933 0.976 2.165 sum 2.204 -30.931 2.848 31.140 Atomic orbital electron populations 1.69817 1.06551 1.25786 1.59960 1.25529 0.96347 1.00993 1.04208 0.85127 0.78338 0.80178 0.76475 1.18980 1.22057 1.22543 1.19663 0.91404 0.85272 1.40248 0.90632 1.42696 1.05290 1.00910 1.88372 1.20222 0.93645 0.83744 0.94489 0.93606 1.23940 1.00552 0.96121 0.97100 1.22140 1.02109 0.94477 0.93517 1.22586 0.99842 0.93008 0.97031 0.89022 1.22379 1.00642 0.99526 0.78231 1.49734 1.68629 1.08729 1.07630 1.18405 0.75829 0.86842 0.82912 1.90751 1.54417 1.77270 1.25107 1.19289 1.06996 0.90404 0.96648 1.21383 1.00337 0.97042 0.95897 1.20523 0.98761 0.91176 0.99078 1.19888 1.01994 0.95386 0.93466 1.22097 1.12015 0.92063 0.99222 1.22639 0.98122 0.92028 0.92405 1.41931 1.57195 1.04215 1.15849 0.73250 1.18107 1.04825 0.88387 0.93154 1.19987 1.01284 0.89779 0.98642 1.20807 1.00229 0.80195 0.97348 1.21861 1.01189 0.97356 0.93784 0.91442 0.94200 0.79594 0.93316 0.91474 0.88681 0.90609 0.86889 0.88745 0.82831 0.82541 0.81279 0.76913 0.86287 0.93279 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.13 13.06 21.65 0.28 -59.84 16 2 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 3 Si 0.97 46.84 29.55 68.60 2.03 48.87 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 7 C -0.23 -12.97 9.96 84.03 0.84 -12.14 16 8 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 9 N -0.73 -36.65 5.11 -322.99 -1.65 -38.30 16 10 C 0.19 7.15 3.44 44.98 0.15 7.30 16 11 H 0.05 1.81 8.09 -2.39 -0.02 1.79 16 12 C -0.14 -4.25 6.80 33.58 0.23 -4.02 16 13 C -0.08 -1.80 6.78 32.06 0.22 -1.59 16 14 C -0.11 -2.37 3.08 -10.04 -0.03 -2.40 16 15 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 16 C 0.11 2.26 4.72 85.28 0.40 2.66 16 17 N -0.61 -17.88 3.42 -818.92 -2.80 -20.68 16 18 C 0.57 18.51 7.65 86.71 0.66 19.17 16 19 O -0.59 -24.43 17.00 -4.01 -0.07 -24.50 16 20 C -0.13 -3.33 5.72 -20.08 -0.11 -3.44 16 21 C -0.13 -2.46 7.85 22.28 0.18 -2.28 16 22 C -0.08 -1.25 10.03 22.20 0.22 -1.03 16 23 C -0.10 -1.80 6.37 -20.14 -0.13 -1.93 16 24 C -0.23 -2.68 11.08 23.49 0.26 -2.42 16 25 C 0.08 0.61 11.81 83.09 0.98 1.59 16 26 N -0.59 -7.05 6.07 -187.71 -1.14 -8.19 16 27 H 0.43 2.93 8.96 -92.71 -0.83 2.10 16 28 C 0.06 1.21 7.26 38.96 0.28 1.50 16 29 C -0.08 -1.83 9.60 22.63 0.22 -1.61 16 30 C 0.14 4.64 6.83 84.77 0.58 5.22 16 31 C -0.12 -3.90 2.17 -11.21 -0.02 -3.93 16 32 H 0.07 2.30 7.77 -2.39 -0.02 2.28 16 33 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 34 H 0.37 20.17 7.66 -92.71 -0.71 19.46 16 35 H 0.05 1.77 7.98 -2.39 -0.02 1.75 16 36 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.11 1.75 6.20 -2.39 -0.01 1.74 16 40 H 0.09 1.63 7.40 -2.39 -0.02 1.62 16 41 H 0.15 2.40 4.60 -2.91 -0.01 2.39 16 42 H 0.16 1.58 8.06 -2.91 -0.02 1.55 16 43 H 0.17 1.16 8.06 -2.91 -0.02 1.13 16 44 H 0.21 -0.19 8.06 -2.91 -0.02 -0.21 16 45 H 0.12 2.99 7.86 -2.91 -0.02 2.97 16 46 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.06 2.13 8.14 -2.38 -0.02 2.12 16 Total: -1.00 -78.37 377.89 1.51 -76.86 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: -0.53 Total: 29.23 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: 5.39 Total: -3.45 kcal Atomic # 7 Polarization: -121.70 SS G_CDS: -5.31 Total: -127.01 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.07 Total: -24.50 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -78.37 1.51 -76.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026365492.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.640 kcal (2) G-P(sol) polarization free energy of solvation -78.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds