Wall clock time and date at job start Tue Mar 31 2020 22:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00185 * 2 1 4 4 H 1.48494 * 109.47095 * 269.99785 * 3 2 1 5 5 H 1.48496 * 109.47001 * 30.00027 * 3 2 1 6 6 H 1.48501 * 109.46893 * 150.00174 * 3 2 1 7 7 C 1.38813 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00220 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99936 * 359.97438 * 7 2 1 10 10 C 1.47420 * 125.64771 * 346.27197 * 9 7 2 11 11 C 1.54911 * 104.92483 * 204.09143 * 10 9 7 12 12 C 1.55271 * 101.52965 * 323.12655 * 11 10 9 13 13 C 1.47023 * 125.64364 * 166.29408 * 9 7 2 14 14 H 1.08997 * 109.88483 * 59.50817 * 13 9 7 15 15 C 1.52998 * 109.88399 * 298.33764 * 13 9 7 16 16 N 1.46504 * 109.46991 * 175.50576 * 15 13 9 17 17 C 1.34772 * 119.99676 * 184.66328 * 16 15 13 18 18 O 1.21550 * 120.00332 * 359.97438 * 17 16 15 19 19 C 1.47862 * 119.99653 * 179.97438 * 17 16 15 20 20 C 1.39618 * 120.11565 * 359.97438 * 19 17 16 21 21 C 1.37970 * 119.98659 * 179.97438 * 20 19 17 22 22 C 1.38261 * 120.21678 * 0.02562 * 21 20 19 23 23 C 1.38901 * 120.23042 * 359.97438 * 22 21 20 24 24 N 1.40232 * 119.99776 * 179.97438 * 23 22 21 25 25 C 1.36564 * 125.66923 * 179.69636 * 24 23 22 26 26 C 1.34857 * 108.20212 * 179.83314 * 25 24 23 27 27 C 1.40947 * 107.46128 * 0.42498 * 26 25 24 28 28 C 1.34846 * 107.46736 * 359.73363 * 27 26 25 29 29 C 1.38589 * 120.01186 * 359.74979 * 23 22 21 30 30 H 0.97000 * 119.99954 * 0.02562 * 1 2 3 31 31 H 1.08998 * 110.36856 * 322.98395 * 10 9 7 32 32 H 1.09001 * 110.36607 * 85.20222 * 10 9 7 33 33 H 1.09002 * 111.00372 * 81.12557 * 11 10 9 34 34 H 1.09005 * 111.00326 * 204.97200 * 11 10 9 35 35 H 1.08998 * 110.62393 * 277.01038 * 12 11 10 36 36 H 1.09000 * 110.75587 * 153.77639 * 12 11 10 37 37 H 1.09000 * 109.47113 * 295.50467 * 15 13 9 38 38 H 1.08998 * 109.47033 * 55.50592 * 15 13 9 39 39 H 0.97005 * 119.99924 * 4.65894 * 16 15 13 40 40 H 1.07997 * 120.00206 * 359.95867 * 20 19 17 41 41 H 1.08001 * 119.89075 * 180.02562 * 21 20 19 42 42 H 1.08005 * 119.88456 * 180.02562 * 22 21 20 43 43 H 1.08002 * 125.90017 * 359.97438 * 25 24 23 44 44 H 1.07995 * 126.27156 * 180.12079 * 26 25 24 45 45 H 1.07999 * 126.26167 * 179.70375 * 27 26 25 46 46 H 1.08004 * 125.89494 * 179.97438 * 28 27 26 47 47 H 1.07999 * 120.11174 * 180.25255 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1119 -2.5503 0.2843 11 6 -0.2604 -4.0153 0.7655 12 6 0.7664 -4.7456 -0.1418 13 6 1.9022 -3.7105 -0.2841 14 1 2.6954 -3.9299 0.4304 15 6 2.4583 -3.7409 -1.7092 16 7 3.1251 -5.0237 -1.9458 17 6 3.7748 -5.2413 -3.1064 18 8 3.8072 -4.3735 -3.9568 19 6 4.4483 -6.5359 -3.3450 20 6 4.4131 -7.5341 -2.3696 21 6 5.0420 -8.7413 -2.5953 22 6 5.7087 -8.9668 -3.7854 23 6 5.7494 -7.9799 -4.7620 24 7 6.4274 -8.2136 -5.9671 25 6 6.5354 -7.3316 -7.0040 26 6 7.2615 -7.9149 -7.9793 27 6 7.6071 -9.2068 -7.5342 28 6 7.0844 -9.3633 -6.3010 29 6 5.1161 -6.7659 -4.5476 30 1 -0.4850 0.8401 -0.0004 31 1 -0.4235 -1.8601 1.0682 32 1 -0.6985 -2.3866 -0.6197 33 1 0.0111 -4.1106 1.8169 34 1 -1.2711 -4.3837 0.5897 35 1 0.3273 -4.9724 -1.1133 36 1 1.1302 -5.6534 0.3396 37 1 1.6415 -3.6192 -2.4206 38 1 3.1751 -2.9297 -1.8368 39 1 3.0990 -5.7164 -1.2672 40 1 3.8939 -7.3613 -1.4385 41 1 5.0134 -9.5126 -1.8398 42 1 6.1988 -9.9138 -3.9566 43 1 6.1141 -6.3377 -7.0365 44 1 7.5254 -7.4747 -8.9295 45 1 8.1843 -9.9377 -8.0809 46 1 7.1703 -10.2457 -5.6842 47 1 5.1433 -5.9990 -5.3075 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028006949.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:12 Heat of formation + Delta-G solvation = 73.149719 kcal Electronic energy + Delta-G solvation = -28065.752232 eV Core-core repulsion = 24215.156470 eV Total energy + Delta-G solvation = -3850.595762 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.91340 -40.11297 -38.49288 -37.56741 -34.49834 -33.49421 -32.51465 -31.76483 -29.85510 -29.28811 -29.11869 -28.44251 -25.23590 -24.45504 -23.58613 -23.06374 -21.27041 -20.35898 -20.24871 -19.91258 -19.61046 -18.85546 -17.06654 -16.71419 -16.36618 -16.08657 -15.38424 -15.24482 -14.94399 -14.77062 -14.63909 -14.31872 -13.99528 -13.88181 -13.77891 -13.36514 -13.20362 -12.69371 -12.61910 -12.48538 -12.16982 -12.12346 -11.92783 -11.82639 -11.69719 -11.39727 -10.97551 -10.82467 -10.27847 -10.21884 -10.15702 -10.02564 -9.90609 -9.80857 -9.70610 -9.45289 -8.79155 -8.61292 -8.53954 -8.35262 -6.88705 -5.79888 -3.16783 0.38477 0.69739 2.05526 2.47685 2.72461 2.85547 3.25552 3.39012 3.44616 3.45160 3.61772 4.28385 4.33869 4.45976 4.55510 4.70354 4.76025 4.79174 4.91610 5.12978 5.21375 5.27922 5.34027 5.35483 5.44517 5.46456 5.57863 5.64628 5.75480 5.84893 5.90093 5.95257 5.98352 6.02130 6.07901 6.17824 6.25314 6.40599 6.48417 6.53952 6.62043 6.62981 6.74106 6.88724 6.98938 7.11434 7.48180 7.56460 7.64814 7.76109 8.21619 8.31702 9.13933 9.74387 10.40809 11.31752 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017287 B = 0.002225 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.314711 B =12579.245794 C =13757.464077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.001 4.001 3 Si 0.911 3.089 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.235 4.235 8 H 0.076 0.924 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.148 4.148 12 C -0.128 4.128 13 C 0.152 3.848 14 H 0.038 0.962 15 C 0.108 3.892 16 N -0.714 5.714 17 C 0.549 3.451 18 O -0.534 6.534 19 C -0.095 4.095 20 C -0.100 4.100 21 C -0.096 4.096 22 C -0.122 4.122 23 C 0.132 3.868 24 N -0.397 5.397 25 C -0.011 4.011 26 C -0.192 4.192 27 C -0.190 4.190 28 C -0.019 4.019 29 C -0.084 4.084 30 H 0.254 0.746 31 H 0.074 0.926 32 H 0.025 0.975 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.395 0.605 40 H 0.135 0.865 41 H 0.139 0.861 42 H 0.133 0.867 43 H 0.167 0.833 44 H 0.141 0.859 45 H 0.140 0.860 46 H 0.164 0.836 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.127 -22.399 -6.594 25.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.199 4.199 3 Si 0.741 3.259 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.363 4.363 8 H 0.094 0.906 9 N -0.312 5.312 10 C 0.046 3.954 11 C -0.187 4.187 12 C -0.166 4.166 13 C 0.043 3.957 14 H 0.056 0.944 15 C -0.017 4.017 16 N -0.365 5.365 17 C 0.334 3.666 18 O -0.412 6.412 19 C -0.099 4.099 20 C -0.120 4.120 21 C -0.114 4.114 22 C -0.142 4.142 23 C 0.040 3.960 24 N -0.069 5.069 25 C -0.138 4.138 26 C -0.216 4.216 27 C -0.214 4.214 28 C -0.145 4.145 29 C -0.104 4.104 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.230 0.770 40 H 0.152 0.848 41 H 0.157 0.843 42 H 0.151 0.849 43 H 0.185 0.815 44 H 0.159 0.841 45 H 0.158 0.842 46 H 0.182 0.818 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 9.916 -21.417 -6.916 24.593 hybrid contribution 0.465 0.542 0.142 0.728 sum 10.381 -20.874 -6.774 24.277 Atomic orbital electron populations 1.69935 1.05015 1.25355 1.55827 1.24908 0.95698 0.97899 1.01345 0.86139 0.78703 0.83296 0.77753 1.21354 1.21616 1.20567 1.18987 0.90415 0.82156 1.44755 0.90608 1.44490 1.05875 1.00756 1.80120 1.21478 0.84639 0.90304 0.98949 1.23025 0.97449 0.99578 0.98644 1.22656 0.97132 0.96974 0.99866 1.21138 0.94449 0.88165 0.91955 0.94404 1.22335 0.96785 0.83052 0.99533 1.46072 1.53951 1.18855 1.17585 1.18153 0.79170 0.86547 0.82691 1.90800 1.60678 1.45339 1.44372 1.19938 1.00140 0.95050 0.94802 1.21417 0.98817 0.92928 0.98800 1.20953 0.96618 0.97299 0.96560 1.20975 1.01265 0.98587 0.93325 1.17763 0.96861 0.95373 0.86044 1.41645 1.39981 1.13493 1.11745 1.22047 1.06277 0.97129 0.88349 1.21020 1.04385 0.96020 1.00160 1.21003 1.06204 0.98284 0.95931 1.21876 1.02742 0.91081 0.98793 1.20907 0.96199 0.95544 0.97794 0.93565 0.90733 0.95648 0.92270 0.92273 0.91768 0.92382 0.91713 0.90825 0.77001 0.84762 0.84336 0.84879 0.81521 0.84087 0.84176 0.81823 0.83820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.38 10.54 55.49 0.58 -25.80 16 2 C 0.00 -0.03 5.47 -17.43 -0.10 -0.13 16 3 Si 0.91 22.02 29.55 -169.99 -5.02 16.99 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.23 -6.36 9.73 -15.06 -0.15 -6.51 16 8 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.59 -14.30 3.13 -162.57 -0.51 -14.80 16 10 C 0.17 3.99 5.42 -2.53 -0.01 3.97 16 11 C -0.15 -2.62 7.10 -24.52 -0.17 -2.79 16 12 C -0.13 -2.02 6.07 -24.83 -0.15 -2.17 16 13 C 0.15 2.88 3.22 -66.95 -0.22 2.67 16 14 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 15 C 0.11 2.02 5.09 -4.04 -0.02 2.00 16 16 N -0.71 -10.35 5.35 -61.24 -0.33 -10.68 16 17 C 0.55 8.57 7.77 -12.32 -0.10 8.47 16 18 O -0.53 -10.58 16.34 5.32 0.09 -10.49 16 19 C -0.10 -1.15 5.87 -104.99 -0.62 -1.77 16 20 C -0.10 -0.89 9.54 -39.16 -0.37 -1.26 16 21 C -0.10 -0.69 10.02 -39.67 -0.40 -1.09 16 22 C -0.12 -0.98 9.45 -39.33 -0.37 -1.35 16 23 C 0.13 1.38 6.61 -83.64 -0.55 0.82 16 24 N -0.40 -4.16 2.97 -60.96 -0.18 -4.34 16 25 C -0.01 -0.12 10.73 -16.64 -0.18 -0.30 16 26 C -0.19 -1.86 10.86 -39.76 -0.43 -2.29 16 27 C -0.19 -1.71 10.86 -39.76 -0.43 -2.15 16 28 C -0.02 -0.17 10.73 -16.65 -0.18 -0.34 16 29 C -0.08 -1.01 9.00 -38.99 -0.35 -1.36 16 30 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.07 1.94 6.86 -51.93 -0.36 1.59 16 32 H 0.03 0.65 8.08 -51.93 -0.42 0.23 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 1.00 7.78 -51.93 -0.40 0.60 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 1.34 8.03 -51.93 -0.42 0.92 16 38 H 0.07 1.60 7.86 -51.93 -0.41 1.19 16 39 H 0.40 4.38 6.28 -40.82 -0.26 4.12 16 40 H 0.13 0.89 6.40 -52.49 -0.34 0.55 16 41 H 0.14 0.59 8.06 -52.49 -0.42 0.16 16 42 H 0.13 0.75 6.69 -52.48 -0.35 0.40 16 43 H 0.17 1.55 7.01 -52.49 -0.37 1.19 16 44 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 45 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 46 H 0.16 0.98 7.00 -52.48 -0.37 0.61 16 47 H 0.14 1.81 6.29 -52.49 -0.33 1.48 16 LS Contribution 383.92 15.07 5.79 5.79 Total: -1.00 -33.11 383.92 -10.90 -44.01 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -6.52 Total: 4.90 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -4.80 Total: -5.57 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: -0.43 Total: -55.63 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.11 -10.90 -44.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028006949.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.162 kcal (2) G-P(sol) polarization free energy of solvation -33.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds