Wall clock time and date at job start Tue Mar 31 2020 22:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00201 * 2 1 4 4 H 1.48495 * 109.47162 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46825 * 300.00344 * 3 2 1 6 6 H 1.48506 * 109.46894 * 60.00074 * 3 2 1 7 7 C 1.38810 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99643 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99954 * 0.02562 * 7 2 1 10 10 C 1.47419 * 125.64734 * 14.71439 * 9 7 2 11 11 C 1.54917 * 104.82852 * 155.82921 * 10 9 7 12 12 C 1.55157 * 101.58219 * 37.01138 * 11 10 9 13 13 C 1.47018 * 125.64763 * 194.66602 * 9 7 2 14 14 H 1.09002 * 109.88622 * 300.52052 * 13 9 7 15 15 C 1.53006 * 109.88659 * 61.68483 * 13 9 7 16 16 N 1.46492 * 109.47737 * 183.28122 * 15 13 9 17 17 C 1.34771 * 120.00255 * 184.87862 * 16 15 13 18 18 O 1.21546 * 120.00043 * 359.97438 * 17 16 15 19 19 C 1.47864 * 119.99846 * 179.97438 * 17 16 15 20 20 C 1.39610 * 120.11534 * 359.72674 * 19 17 16 21 21 C 1.37974 * 119.98616 * 179.76623 * 20 19 17 22 22 C 1.38265 * 120.21726 * 0.53086 * 21 20 19 23 23 C 1.38908 * 120.22677 * 359.70066 * 22 21 20 24 24 N 1.40224 * 119.99520 * 180.02562 * 23 22 21 25 25 C 1.36570 * 125.66983 * 179.71148 * 24 23 22 26 26 C 1.34851 * 108.20247 * 179.86397 * 25 24 23 27 27 C 1.40944 * 107.46516 * 0.39200 * 26 25 24 28 28 C 1.34848 * 107.46819 * 359.75491 * 27 26 25 29 29 C 1.38588 * 120.01031 * 0.03939 * 23 22 21 30 30 H 0.97006 * 120.00055 * 359.97438 * 1 2 3 31 31 H 1.09000 * 110.37062 * 36.99099 * 10 9 7 32 32 H 1.09000 * 110.46118 * 274.71198 * 10 9 7 33 33 H 1.08998 * 111.00424 * 278.93052 * 11 10 9 34 34 H 1.09000 * 110.99909 * 155.08482 * 11 10 9 35 35 H 1.09000 * 110.72113 * 82.85848 * 12 11 10 36 36 H 1.08997 * 110.71749 * 206.13468 * 12 11 10 37 37 H 1.09004 * 109.46625 * 303.28049 * 15 13 9 38 38 H 1.09003 * 109.46911 * 63.27340 * 15 13 9 39 39 H 0.97011 * 119.99560 * 4.87194 * 16 15 13 40 40 H 1.08000 * 120.00968 * 0.02562 * 20 19 17 41 41 H 1.08003 * 119.89271 * 180.24872 * 21 20 19 42 42 H 1.08003 * 119.88863 * 179.72059 * 22 21 20 43 43 H 1.08003 * 125.89798 * 0.02562 * 25 24 23 44 44 H 1.07994 * 126.26640 * 180.15400 * 26 25 24 45 45 H 1.07997 * 126.26401 * 179.75765 * 27 26 25 46 46 H 1.08002 * 125.90182 * 179.97438 * 28 27 26 47 47 H 1.07997 * 120.11041 * 179.97438 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 -0.1074 -2.5525 -0.3065 11 6 -0.2459 -4.0210 -0.7803 12 6 0.7646 -4.7446 0.1486 13 6 1.8979 -3.7082 0.3002 14 1 2.7018 -3.9328 -0.4008 15 6 2.4328 -3.7282 1.7336 16 7 3.0705 -5.0200 1.9990 17 6 3.5293 -5.3040 3.2340 18 8 3.4144 -4.4881 4.1275 19 6 4.1725 -6.6082 3.5019 20 6 4.3006 -7.5494 2.4787 21 6 4.9055 -8.7636 2.7305 22 6 5.3765 -9.0571 3.9969 23 6 5.2494 -8.1291 5.0227 24 7 5.7293 -8.4317 6.3051 25 6 5.6704 -7.6074 7.3923 26 6 6.2288 -8.2495 8.4385 27 6 6.6562 -9.5121 7.9806 28 6 6.3384 -9.5973 6.6729 29 6 4.6482 -6.9045 4.7790 30 1 -0.4850 0.8401 0.0004 31 1 -0.4075 -1.8680 -1.1000 32 1 -0.7089 -2.3837 0.5867 33 1 0.0426 -4.1229 -1.8264 34 1 -1.2588 -4.3897 -0.6183 35 1 0.3110 -4.9643 1.1151 36 1 1.1355 -5.6558 -0.3207 37 1 3.1637 -2.9294 1.8597 38 1 1.6084 -3.5797 2.4311 39 1 3.1624 -5.6711 1.2857 40 1 3.9300 -7.3254 1.4893 41 1 5.0075 -9.4890 1.9368 42 1 5.8451 -10.0110 4.1891 43 1 5.2471 -6.6139 7.4117 44 1 6.3331 -7.8650 9.4422 45 1 7.1481 -10.2721 8.5694 46 1 6.5326 -10.4414 6.0277 47 1 4.5482 -6.1820 5.5754 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028006950.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:14 Heat of formation + Delta-G solvation = 53.746342 kcal Electronic energy + Delta-G solvation = -28075.823148 eV Core-core repulsion = 24224.385993 eV Total energy + Delta-G solvation = -3851.437155 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.61884 -41.22616 -39.61531 -38.98885 -35.93670 -34.52219 -34.17251 -32.56803 -31.45149 -30.62152 -29.80592 -29.59011 -26.82288 -26.04715 -24.57937 -23.96669 -22.28807 -21.91539 -21.29150 -21.00249 -20.67381 -19.85141 -18.72046 -17.77373 -17.52958 -17.08605 -16.78454 -16.48187 -16.07879 -15.93531 -15.80554 -15.67107 -15.21865 -14.87056 -14.74273 -14.55570 -14.37396 -13.99577 -13.68297 -13.56894 -13.36617 -13.27818 -13.16702 -13.01347 -12.87686 -12.78644 -12.69405 -12.45323 -12.00072 -11.89663 -11.74520 -11.50049 -11.40502 -11.17439 -10.93875 -10.70765 -10.31695 -10.04750 -9.24892 -9.06703 -8.87729 -7.90827 -5.28255 -0.38152 -0.05289 1.32963 1.41869 1.44367 1.53337 1.74692 1.84695 2.02742 2.07350 2.47382 2.76196 3.29059 3.45549 3.65623 3.74104 3.83133 3.92241 3.96841 4.02749 4.05255 4.13530 4.25165 4.26397 4.41797 4.45476 4.53966 4.58296 4.68627 4.71930 4.78969 4.92538 4.98180 5.00258 5.13350 5.15433 5.18567 5.22656 5.28949 5.30599 5.33856 5.46102 5.54330 5.62407 5.65914 5.77625 5.93876 6.17852 6.21332 6.42605 6.48158 7.07127 7.13212 7.74457 8.39951 9.20266 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017727 B = 0.002204 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.087949 B =12701.497088 C =13725.534690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.061 4.061 3 Si 0.970 3.030 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.297 1.297 7 C -0.238 4.238 8 H 0.078 0.922 9 N -0.610 5.610 10 C 0.172 3.828 11 C -0.133 4.133 12 C -0.114 4.114 13 C 0.148 3.852 14 H 0.057 0.943 15 C 0.128 3.872 16 N -0.695 5.695 17 C 0.547 3.453 18 O -0.590 6.590 19 C -0.116 4.116 20 C -0.090 4.090 21 C -0.082 4.082 22 C -0.109 4.109 23 C 0.118 3.882 24 N -0.405 5.405 25 C -0.043 4.043 26 C -0.199 4.199 27 C -0.204 4.204 28 C -0.018 4.018 29 C -0.105 4.105 30 H 0.247 0.753 31 H 0.036 0.964 32 H -0.010 1.010 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.110 0.890 37 H 0.034 0.966 38 H 0.036 0.964 39 H 0.417 0.583 40 H 0.162 0.838 41 H 0.184 0.816 42 H 0.166 0.834 43 H 0.161 0.839 44 H 0.152 0.848 45 H 0.162 0.838 46 H 0.199 0.801 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.516 -27.208 5.148 29.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.255 4.255 3 Si 0.799 3.201 4 H -0.191 1.191 5 H -0.214 1.214 6 H -0.224 1.224 7 C -0.367 4.367 8 H 0.095 0.905 9 N -0.335 5.335 10 C 0.047 3.953 11 C -0.171 4.171 12 C -0.151 4.151 13 C 0.041 3.959 14 H 0.075 0.925 15 C 0.002 3.998 16 N -0.348 5.348 17 C 0.335 3.665 18 O -0.472 6.472 19 C -0.120 4.120 20 C -0.109 4.109 21 C -0.100 4.100 22 C -0.129 4.129 23 C 0.025 3.975 24 N -0.077 5.077 25 C -0.170 4.170 26 C -0.223 4.223 27 C -0.227 4.227 28 C -0.144 4.144 29 C -0.126 4.126 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.008 0.992 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.129 0.871 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.256 0.744 40 H 0.180 0.820 41 H 0.201 0.799 42 H 0.183 0.817 43 H 0.178 0.822 44 H 0.169 0.831 45 H 0.180 0.820 46 H 0.215 0.785 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.274 -26.321 5.466 29.151 hybrid contribution 0.020 1.924 0.445 1.975 sum 11.294 -24.397 5.910 27.526 Atomic orbital electron populations 1.70144 1.06276 1.25311 1.57594 1.25691 0.96525 1.01030 1.02237 0.85131 0.78357 0.79914 0.76694 1.19112 1.21427 1.22391 1.19335 0.90766 0.83585 1.43034 0.90466 1.44754 1.06879 1.02155 1.79693 1.21278 0.84074 0.93675 0.96256 1.22872 0.99674 0.95116 0.99481 1.22625 0.95121 0.97521 0.99851 1.21369 0.96273 0.86783 0.91498 0.92508 1.21763 0.95501 0.83727 0.98851 1.45696 1.59116 1.18793 1.11155 1.18773 0.78049 0.87107 0.82521 1.90768 1.59065 1.51162 1.46158 1.19618 1.03007 0.94240 0.95126 1.21744 0.97374 0.92962 0.98854 1.21455 0.95127 0.96639 0.96760 1.21458 1.00250 0.99418 0.91736 1.17940 0.99570 0.95210 0.84741 1.41794 1.44887 1.14598 1.06460 1.22186 1.09333 0.98546 0.86927 1.21326 1.05275 0.96512 0.99204 1.21358 1.07494 0.98979 0.94891 1.22498 1.03355 0.90819 0.97707 1.20808 0.98644 0.95851 0.97260 0.94328 0.94576 0.99230 0.90846 0.89996 0.91880 0.87141 0.94706 0.94522 0.74419 0.82030 0.79911 0.81678 0.82205 0.83055 0.82050 0.78457 0.86351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.22 10.58 21.65 0.23 -56.99 16 2 C -0.06 -3.50 5.47 84.86 0.46 -3.04 16 3 Si 0.97 46.61 29.55 68.60 2.03 48.64 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 7 C -0.24 -13.20 9.74 84.03 0.82 -12.38 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 9 N -0.61 -30.21 3.13 -668.26 -2.09 -32.30 16 10 C 0.17 8.27 5.41 86.86 0.47 8.74 16 11 C -0.13 -4.42 7.09 31.99 0.23 -4.19 16 12 C -0.11 -3.24 6.14 31.78 0.20 -3.04 16 13 C 0.15 5.45 3.21 45.34 0.15 5.60 16 14 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 15 C 0.13 4.90 5.08 86.38 0.44 5.34 16 16 N -0.70 -19.47 5.29 -465.97 -2.47 -21.94 16 17 C 0.55 17.39 7.77 86.79 0.67 18.07 16 18 O -0.59 -25.07 16.34 -3.86 -0.06 -25.13 16 19 C -0.12 -2.71 5.87 -20.10 -0.12 -2.82 16 20 C -0.09 -1.23 9.54 22.54 0.21 -1.01 16 21 C -0.08 -0.72 10.02 22.21 0.22 -0.49 16 22 C -0.11 -1.27 9.45 22.44 0.21 -1.06 16 23 C 0.12 2.28 6.61 38.04 0.25 2.54 16 24 N -0.41 -8.14 2.97 -346.78 -1.03 -9.17 16 25 C -0.04 -0.96 10.73 83.18 0.89 -0.07 16 26 C -0.20 -3.86 10.86 22.15 0.24 -3.62 16 27 C -0.20 -3.32 10.86 22.15 0.24 -3.08 16 28 C -0.02 -0.28 10.73 83.18 0.89 0.62 16 29 C -0.10 -2.58 9.00 22.65 0.20 -2.38 16 30 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 31 H 0.04 1.96 6.93 -2.39 -0.02 1.95 16 32 H -0.01 -0.56 8.06 -2.39 -0.02 -0.58 16 33 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.06 1.85 7.80 -2.39 -0.02 1.83 16 36 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.03 1.56 7.90 -2.38 -0.02 1.54 16 38 H 0.04 1.63 8.06 -2.39 -0.02 1.61 16 39 H 0.42 7.79 6.39 -92.70 -0.59 7.19 16 40 H 0.16 1.22 6.40 -2.91 -0.02 1.21 16 41 H 0.18 0.10 8.06 -2.91 -0.02 0.08 16 42 H 0.17 0.86 6.69 -2.91 -0.02 0.84 16 43 H 0.16 3.49 7.01 -2.91 -0.02 3.47 16 44 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 45 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 46 H 0.20 1.44 7.00 -2.91 -0.02 1.42 16 47 H 0.12 3.39 6.29 -2.91 -0.02 3.37 16 Total: -1.00 -80.34 384.17 3.69 -76.65 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.40 Total: 16.52 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: 6.69 Total: 3.72 kcal Atomic # 7 Polarization: -115.04 SS G_CDS: -5.36 Total: -120.40 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.06 Total: -25.13 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -80.34 3.69 -76.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028006950.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.397 kcal (2) G-P(sol) polarization free energy of solvation -80.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds