Wall clock time and date at job start Tue Mar 31 2020 23:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39051 * 121.01419 * 2 1 4 4 C 1.47761 * 120.26898 * 359.97438 * 3 2 1 5 5 O 1.21562 * 119.99918 * 6.08311 * 4 3 2 6 6 N 1.34771 * 120.00352 * 186.08824 * 4 3 2 7 7 C 1.46491 * 120.00406 * 179.97438 * 6 4 3 8 8 C 1.53005 * 109.47485 * 185.07589 * 7 6 4 9 9 H 1.09006 * 109.86719 * 303.63964 * 8 7 6 10 10 C 1.54320 * 109.88077 * 64.65466 * 8 7 6 11 11 C 1.55162 * 102.93956 * 141.61390 * 10 8 7 12 12 C 1.54905 * 101.58126 * 324.49954 * 11 10 8 13 13 N 1.47015 * 109.88280 * 182.47026 * 8 7 6 14 14 C 1.36935 * 125.65324 * 61.61741 * 13 8 7 15 15 H 1.08003 * 119.99992 * 11.48843 * 14 13 8 16 16 C 1.38813 * 120.00130 * 191.48267 * 14 13 8 17 17 N 1.31618 * 119.99912 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00074 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46971 * 90.00203 * 18 16 14 20 20 H 1.48492 * 109.47098 * 210.00488 * 18 16 14 21 21 H 1.48498 * 109.47079 * 330.00374 * 18 16 14 22 22 C 1.40558 * 119.46326 * 180.02562 * 3 2 1 23 23 N 1.30823 * 121.54236 * 359.97201 * 22 3 2 24 24 C 1.33796 * 121.71738 * 0.04803 * 23 22 3 25 25 C 1.40528 * 120.82602 * 179.97438 * 24 23 22 26 26 C 1.36131 * 119.81373 * 179.97438 * 25 24 23 27 27 C 1.39342 * 121.09547 * 0.27129 * 26 25 24 28 28 C 1.36140 * 120.83626 * 359.41778 * 27 26 25 29 29 C 1.40485 * 121.02394 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.47073 * 276.63827 * 1 2 3 31 31 H 1.08993 * 109.47745 * 36.64094 * 1 2 3 32 32 H 1.09000 * 109.46848 * 156.64551 * 1 2 3 33 33 H 0.97001 * 119.99530 * 0.02562 * 6 4 3 34 34 H 1.08998 * 109.47191 * 305.07562 * 7 6 4 35 35 H 1.08998 * 109.47231 * 65.07447 * 7 6 4 36 36 H 1.08998 * 110.72047 * 259.97123 * 10 8 7 37 37 H 1.08993 * 110.72399 * 23.25261 * 10 8 7 38 38 H 1.08999 * 111.00244 * 82.57148 * 11 10 8 39 39 H 1.08998 * 111.00428 * 206.42108 * 11 10 8 40 40 H 1.08997 * 110.36639 * 155.84715 * 12 11 10 41 41 H 1.08995 * 110.36668 * 278.05870 * 12 11 10 42 42 H 0.97004 * 119.99839 * 179.97438 * 17 16 14 43 43 H 1.08001 * 119.23016 * 179.97438 * 22 3 2 44 44 H 1.07997 * 120.09689 * 359.95199 * 25 24 23 45 45 H 1.07999 * 119.45571 * 180.02562 * 26 25 24 46 46 H 1.08006 * 119.58792 * 179.72158 * 27 26 25 47 47 H 1.07998 * 120.19485 * 180.27872 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2235 1.1917 0.0000 4 6 1.5135 2.4876 -0.0006 5 8 0.3033 2.5177 0.1105 6 7 2.2075 3.6362 -0.1244 7 6 1.5036 4.9209 -0.1255 8 6 2.4999 6.0482 -0.4045 9 1 3.3056 6.0206 0.3292 10 6 3.0795 5.8962 -1.8266 11 6 3.1738 7.3636 -2.3221 12 6 1.9174 7.9932 -1.6705 13 7 1.8135 7.3471 -0.3493 14 6 1.1819 7.8701 0.7473 15 1 1.3151 7.4126 1.7166 16 6 0.3705 8.9884 0.6134 17 7 0.2078 9.5457 -0.5678 18 14 -0.4906 9.7023 2.1096 19 1 0.3840 10.7203 2.7451 20 1 -1.7658 10.3373 1.6906 21 1 -0.7743 8.6167 3.0823 22 6 3.6285 1.1537 -0.0005 23 7 4.2825 0.0206 -0.0005 24 6 3.6483 -1.1575 -0.0009 25 6 4.3697 -2.3636 -0.0014 26 6 3.7034 -3.5507 -0.0013 27 6 2.3107 -3.5943 -0.0063 28 6 1.5766 -2.4477 0.0004 29 6 2.2311 -1.2039 -0.0005 30 1 -0.3633 0.1188 1.0208 31 1 -0.3634 0.8245 -0.6132 32 1 -0.3633 -0.9435 -0.4074 33 1 3.1731 3.6122 -0.2134 34 1 0.7364 4.9142 -0.8997 35 1 1.0373 5.0806 0.8467 36 1 4.0671 5.4362 -1.7934 37 1 2.4049 5.3185 -2.4584 38 1 4.0836 7.8411 -1.9581 39 1 3.1166 7.4132 -3.4094 40 1 2.0478 9.0694 -1.5572 41 1 1.0322 7.7800 -2.2695 42 1 -0.3595 10.3270 -0.6615 43 1 4.1812 2.0816 -0.0010 44 1 5.4495 -2.3488 -0.0023 45 1 4.2635 -4.4741 -0.0012 46 1 1.8070 -4.5497 -0.0107 47 1 0.4976 -2.4936 0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028036674.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:03 Heat of formation + Delta-G solvation = 43.556141 kcal Electronic energy + Delta-G solvation = -28576.096755 eV Core-core repulsion = 24724.217719 eV Total energy + Delta-G solvation = -3851.879035 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.32911 -39.47960 -37.73518 -37.09599 -34.99122 -34.18646 -32.52295 -31.23739 -30.61598 -29.66305 -28.83257 -27.85242 -25.19862 -24.51130 -24.20864 -23.39298 -21.36434 -20.90029 -20.19150 -19.63699 -18.44458 -18.01405 -17.24543 -16.65343 -15.93435 -15.75154 -15.35825 -14.88136 -14.65650 -14.61847 -14.48588 -14.28392 -14.03113 -13.83721 -13.35484 -13.24605 -12.99812 -12.86903 -12.27344 -12.12411 -12.08363 -12.05115 -11.90689 -11.81058 -11.74442 -11.32540 -10.97352 -10.80067 -10.41787 -10.26586 -10.13744 -10.05512 -9.91877 -9.84336 -9.69985 -9.41249 -9.13173 -8.75605 -8.61605 -8.46928 -6.88777 -5.76943 -3.13962 -0.01866 0.34572 1.58851 2.35665 3.19714 3.27740 3.39389 3.45006 3.46564 3.83720 3.92516 4.20556 4.40142 4.42044 4.46944 4.54563 4.71846 4.78798 4.93043 5.09850 5.19244 5.30412 5.37698 5.41275 5.49833 5.53941 5.58627 5.61839 5.68267 5.74785 5.79059 5.92182 6.02434 6.04192 6.10363 6.18116 6.22394 6.25649 6.43977 6.47465 6.52063 6.58714 6.67085 6.77215 7.01938 7.52210 7.57406 7.58386 7.67840 7.78757 8.23963 8.34856 9.15833 9.76452 10.42397 11.33781 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019987 B = 0.002373 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.579240 B =11795.146549 C =12569.683983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.047 3.953 3 C -0.199 4.199 4 C 0.557 3.443 5 O -0.531 6.531 6 N -0.715 5.715 7 C 0.109 3.891 8 C 0.151 3.849 9 H 0.038 0.962 10 C -0.127 4.127 11 C -0.149 4.149 12 C 0.169 3.831 13 N -0.589 5.589 14 C -0.233 4.233 15 H 0.077 0.923 16 C -0.003 4.003 17 N -0.917 5.917 18 Si 0.911 3.089 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.168 3.832 23 N -0.483 5.483 24 C 0.143 3.857 25 C -0.099 4.099 26 C -0.093 4.093 27 C -0.124 4.124 28 C -0.086 4.086 29 C -0.114 4.114 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.065 0.935 33 H 0.394 0.606 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.023 0.977 42 H 0.254 0.746 43 H 0.162 0.838 44 H 0.137 0.863 45 H 0.130 0.870 46 H 0.129 0.871 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.384 -24.321 -1.615 25.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.038 3.962 3 C -0.205 4.205 4 C 0.343 3.657 5 O -0.410 6.410 6 N -0.366 5.366 7 C -0.016 4.016 8 C 0.043 3.957 9 H 0.056 0.944 10 C -0.165 4.165 11 C -0.187 4.187 12 C 0.045 3.955 13 N -0.313 5.313 14 C -0.361 4.361 15 H 0.095 0.905 16 C -0.200 4.200 17 N -0.563 5.563 18 Si 0.742 3.258 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.205 1.205 22 C -0.006 4.006 23 N -0.191 5.191 24 C 0.022 3.978 25 C -0.118 4.118 26 C -0.113 4.113 27 C -0.142 4.142 28 C -0.104 4.104 29 C -0.116 4.116 30 H 0.106 0.894 31 H 0.125 0.875 32 H 0.083 0.917 33 H 0.229 0.771 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.041 0.959 42 H 0.064 0.936 43 H 0.179 0.821 44 H 0.155 0.845 45 H 0.148 0.852 46 H 0.147 0.853 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.277 -24.146 -1.490 25.263 hybrid contribution -0.880 0.396 0.741 1.217 sum 6.397 -23.750 -0.748 24.608 Atomic orbital electron populations 1.21199 0.88675 1.03808 1.04637 1.20690 0.97354 0.90492 0.87658 1.20911 0.95122 0.94574 1.09862 1.17932 0.87049 0.83351 0.77394 1.90741 1.13487 1.87000 1.49769 1.46070 1.10685 1.06546 1.73327 1.22307 0.96502 0.80084 1.02675 1.21128 0.93195 0.86550 0.94849 0.94394 1.22619 0.99503 0.97767 0.96632 1.23011 1.01019 0.95494 0.99204 1.21529 0.91418 0.98146 0.84431 1.44493 1.63908 1.13244 1.09629 1.19004 1.21066 1.09471 0.86554 0.90536 1.24872 0.99094 0.99127 0.96890 1.69933 1.41723 1.23467 1.21186 0.86130 0.79031 0.78946 0.81740 1.21529 1.21598 1.20543 1.23046 0.90216 0.96569 0.90757 1.67954 1.39483 0.97463 1.14210 1.19005 0.89597 0.92632 0.96526 1.20826 1.00536 0.90089 1.00336 1.20980 0.94529 0.98029 0.97780 1.20940 0.94116 0.98573 1.00616 1.21134 1.00405 0.91021 0.97856 1.18735 0.94015 0.94089 1.04762 0.89395 0.87519 0.91674 0.77115 0.91345 0.91291 0.92342 0.91819 0.92257 0.92348 0.90266 0.95883 0.93606 0.82067 0.84518 0.85165 0.85335 0.84727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 8.48 36.01 0.31 -1.12 16 2 C 0.05 0.57 5.99 -103.47 -0.62 -0.05 16 3 C -0.20 -2.59 5.89 -104.83 -0.62 -3.21 16 4 C 0.56 8.53 7.72 -12.37 -0.10 8.43 16 5 O -0.53 -9.76 13.45 5.31 0.07 -9.69 16 6 N -0.72 -10.37 5.28 -61.28 -0.32 -10.70 16 7 C 0.11 2.02 5.07 -4.04 -0.02 2.00 16 8 C 0.15 2.90 3.22 -66.96 -0.22 2.68 16 9 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 10 C -0.13 -2.06 6.10 -24.90 -0.15 -2.21 16 11 C -0.15 -2.68 7.09 -24.58 -0.17 -2.85 16 12 C 0.17 3.99 5.47 -2.53 -0.01 3.97 16 13 N -0.59 -14.33 3.13 -162.57 -0.51 -14.84 16 14 C -0.23 -6.28 9.77 -15.06 -0.15 -6.43 16 15 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 16 C 0.00 -0.08 5.48 -17.43 -0.10 -0.17 16 17 N -0.92 -26.43 10.46 55.49 0.58 -25.85 16 18 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 C 0.17 1.95 10.67 -17.11 -0.18 1.77 16 23 N -0.48 -6.00 10.30 -10.68 -0.11 -6.11 16 24 C 0.14 1.68 6.61 -84.78 -0.56 1.12 16 25 C -0.10 -0.91 9.97 -39.48 -0.39 -1.30 16 26 C -0.09 -0.66 9.94 -39.93 -0.40 -1.06 16 27 C -0.12 -0.87 9.96 -39.93 -0.40 -1.27 16 28 C -0.09 -0.73 9.32 -39.46 -0.37 -1.10 16 29 C -0.11 -1.28 5.74 -106.81 -0.61 -1.89 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.11 1.43 5.95 -51.93 -0.31 1.12 16 32 H 0.06 0.54 6.20 -51.93 -0.32 0.22 16 33 H 0.39 4.52 6.40 -40.82 -0.26 4.26 16 34 H 0.07 1.42 8.08 -51.93 -0.42 1.00 16 35 H 0.07 1.45 7.92 -51.93 -0.41 1.04 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 1.03 7.81 -51.93 -0.41 0.62 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.08 2.09 6.70 -51.93 -0.35 1.74 16 41 H 0.02 0.59 8.12 -51.93 -0.42 0.17 16 42 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.16 1.44 6.42 -52.49 -0.34 1.10 16 44 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 45 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 46 H 0.13 0.56 8.06 -52.48 -0.42 0.13 16 47 H 0.14 0.89 6.30 -52.49 -0.33 0.56 16 LS Contribution 376.87 15.07 5.68 5.68 Total: -1.00 -32.33 376.87 -10.88 -43.21 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -6.49 Total: 4.05 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -4.76 Total: -2.69 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: -0.36 Total: -57.50 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.07 Total: -9.69 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.33 -10.88 -43.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028036674.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.771 kcal (2) G-P(sol) polarization free energy of solvation -32.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds