Wall clock time and date at job start Tue Mar 31 2020 23:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39051 * 121.01419 * 2 1 4 4 C 1.47761 * 120.26898 * 359.97438 * 3 2 1 5 5 O 1.21562 * 119.99918 * 6.08311 * 4 3 2 6 6 N 1.34771 * 120.00352 * 186.08824 * 4 3 2 7 7 C 1.46491 * 120.00406 * 179.97438 * 6 4 3 8 8 C 1.53005 * 109.47485 * 185.07589 * 7 6 4 9 9 H 1.09006 * 109.86719 * 303.63964 * 8 7 6 10 10 C 1.54320 * 109.88077 * 64.65466 * 8 7 6 11 11 C 1.55162 * 102.93956 * 141.61390 * 10 8 7 12 12 C 1.54905 * 101.58126 * 324.49954 * 11 10 8 13 13 N 1.47015 * 109.88280 * 182.47026 * 8 7 6 14 14 C 1.36935 * 125.65324 * 61.61741 * 13 8 7 15 15 H 1.08003 * 119.99992 * 11.48843 * 14 13 8 16 16 C 1.38813 * 120.00130 * 191.48267 * 14 13 8 17 17 N 1.31618 * 119.99912 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00074 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46971 * 90.00203 * 18 16 14 20 20 H 1.48492 * 109.47098 * 210.00488 * 18 16 14 21 21 H 1.48498 * 109.47079 * 330.00374 * 18 16 14 22 22 C 1.40558 * 119.46326 * 180.02562 * 3 2 1 23 23 N 1.30823 * 121.54236 * 359.97201 * 22 3 2 24 24 C 1.33796 * 121.71738 * 0.04803 * 23 22 3 25 25 C 1.40528 * 120.82602 * 179.97438 * 24 23 22 26 26 C 1.36131 * 119.81373 * 179.97438 * 25 24 23 27 27 C 1.39342 * 121.09547 * 0.27129 * 26 25 24 28 28 C 1.36140 * 120.83626 * 359.41778 * 27 26 25 29 29 C 1.40485 * 121.02394 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.47073 * 276.63827 * 1 2 3 31 31 H 1.08993 * 109.47745 * 36.64094 * 1 2 3 32 32 H 1.09000 * 109.46848 * 156.64551 * 1 2 3 33 33 H 0.97001 * 119.99530 * 0.02562 * 6 4 3 34 34 H 1.08998 * 109.47191 * 305.07562 * 7 6 4 35 35 H 1.08998 * 109.47231 * 65.07447 * 7 6 4 36 36 H 1.08998 * 110.72047 * 259.97123 * 10 8 7 37 37 H 1.08993 * 110.72399 * 23.25261 * 10 8 7 38 38 H 1.08999 * 111.00244 * 82.57148 * 11 10 8 39 39 H 1.08998 * 111.00428 * 206.42108 * 11 10 8 40 40 H 1.08997 * 110.36639 * 155.84715 * 12 11 10 41 41 H 1.08995 * 110.36668 * 278.05870 * 12 11 10 42 42 H 0.97004 * 119.99839 * 179.97438 * 17 16 14 43 43 H 1.08001 * 119.23016 * 179.97438 * 22 3 2 44 44 H 1.07997 * 120.09689 * 359.95199 * 25 24 23 45 45 H 1.07999 * 119.45571 * 180.02562 * 26 25 24 46 46 H 1.08006 * 119.58792 * 179.72158 * 27 26 25 47 47 H 1.07998 * 120.19485 * 180.27872 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2235 1.1917 0.0000 4 6 1.5135 2.4876 -0.0006 5 8 0.3033 2.5177 0.1105 6 7 2.2075 3.6362 -0.1244 7 6 1.5036 4.9209 -0.1255 8 6 2.4999 6.0482 -0.4045 9 1 3.3056 6.0206 0.3292 10 6 3.0795 5.8962 -1.8266 11 6 3.1738 7.3636 -2.3221 12 6 1.9174 7.9932 -1.6705 13 7 1.8135 7.3471 -0.3493 14 6 1.1819 7.8701 0.7473 15 1 1.3151 7.4126 1.7166 16 6 0.3705 8.9884 0.6134 17 7 0.2078 9.5457 -0.5678 18 14 -0.4906 9.7023 2.1096 19 1 0.3840 10.7203 2.7451 20 1 -1.7658 10.3373 1.6906 21 1 -0.7743 8.6167 3.0823 22 6 3.6285 1.1537 -0.0005 23 7 4.2825 0.0206 -0.0005 24 6 3.6483 -1.1575 -0.0009 25 6 4.3697 -2.3636 -0.0014 26 6 3.7034 -3.5507 -0.0013 27 6 2.3107 -3.5943 -0.0063 28 6 1.5766 -2.4477 0.0004 29 6 2.2311 -1.2039 -0.0005 30 1 -0.3633 0.1188 1.0208 31 1 -0.3634 0.8245 -0.6132 32 1 -0.3633 -0.9435 -0.4074 33 1 3.1731 3.6122 -0.2134 34 1 0.7364 4.9142 -0.8997 35 1 1.0373 5.0806 0.8467 36 1 4.0671 5.4362 -1.7934 37 1 2.4049 5.3185 -2.4584 38 1 4.0836 7.8411 -1.9581 39 1 3.1166 7.4132 -3.4094 40 1 2.0478 9.0694 -1.5572 41 1 1.0322 7.7800 -2.2695 42 1 -0.3595 10.3270 -0.6615 43 1 4.1812 2.0816 -0.0010 44 1 5.4495 -2.3488 -0.0023 45 1 4.2635 -4.4741 -0.0012 46 1 1.8070 -4.5497 -0.0107 47 1 0.4976 -2.4936 0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028036674.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:02 Heat of formation + Delta-G solvation = 23.756771 kcal Electronic energy + Delta-G solvation = -28576.955320 eV Core-core repulsion = 24724.217719 eV Total energy + Delta-G solvation = -3852.737601 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.18173 -40.65973 -39.29559 -37.89464 -36.13114 -35.34362 -34.41945 -32.21275 -31.34709 -31.30019 -30.26442 -28.87413 -26.78135 -26.00555 -25.02278 -24.56652 -22.31603 -22.01708 -21.75202 -21.18800 -19.54141 -18.85471 -18.61528 -18.01434 -17.26285 -16.73350 -16.59336 -16.47515 -15.93588 -15.71637 -15.47688 -15.35616 -15.24880 -14.86793 -14.58979 -14.48544 -13.98869 -13.90251 -13.82659 -13.64032 -13.41749 -13.18872 -12.97144 -12.87132 -12.76246 -12.73214 -12.65594 -12.41856 -12.03684 -11.84392 -11.71470 -11.45987 -11.40282 -11.24883 -11.05089 -10.68761 -10.47353 -10.15053 -9.82751 -9.23721 -8.88429 -7.86760 -5.24509 -0.82225 -0.42593 0.82326 1.44310 1.46141 1.51077 1.54431 2.03843 2.20887 2.49470 3.03718 3.15776 3.31286 3.45045 3.54742 3.56823 3.74917 3.80269 3.90395 3.98213 3.99606 4.20059 4.25985 4.32101 4.41593 4.43158 4.45980 4.53944 4.59002 4.66269 4.73664 4.92145 4.94548 4.97891 5.00174 5.04827 5.13539 5.16456 5.23571 5.34720 5.40927 5.43148 5.48254 5.49837 5.56282 5.67825 5.79492 5.85126 6.23595 6.49156 6.75890 7.09151 7.15876 7.76644 8.41462 9.22818 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019987 B = 0.002373 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.579240 B =11795.146549 C =12569.683983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.041 3.959 3 C -0.217 4.217 4 C 0.558 3.442 5 O -0.569 6.569 6 N -0.701 5.701 7 C 0.131 3.869 8 C 0.147 3.853 9 H 0.054 0.946 10 C -0.114 4.114 11 C -0.134 4.134 12 C 0.170 3.830 13 N -0.610 5.610 14 C -0.237 4.237 15 H 0.078 0.922 16 C -0.062 4.062 17 N -0.946 5.946 18 Si 0.972 3.028 19 H -0.282 1.282 20 H -0.296 1.296 21 H -0.273 1.273 22 C 0.166 3.834 23 N -0.497 5.497 24 C 0.121 3.879 25 C -0.118 4.118 26 C -0.078 4.078 27 C -0.115 4.115 28 C -0.096 4.096 29 C -0.129 4.129 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.413 0.587 34 H 0.040 0.960 35 H 0.037 0.963 36 H 0.105 0.895 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.043 0.957 41 H -0.011 1.011 42 H 0.247 0.753 43 H 0.185 0.815 44 H 0.146 0.854 45 H 0.166 0.834 46 H 0.163 0.837 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.391 -28.045 -1.507 29.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.033 3.967 3 C -0.223 4.223 4 C 0.346 3.654 5 O -0.450 6.450 6 N -0.354 5.354 7 C 0.005 3.995 8 C 0.040 3.960 9 H 0.071 0.929 10 C -0.152 4.152 11 C -0.172 4.172 12 C 0.046 3.954 13 N -0.335 5.335 14 C -0.366 4.366 15 H 0.096 0.904 16 C -0.255 4.255 17 N -0.595 5.595 18 Si 0.801 3.199 19 H -0.209 1.209 20 H -0.222 1.222 21 H -0.198 1.198 22 C -0.008 4.008 23 N -0.205 5.205 24 C 0.001 3.999 25 C -0.136 4.136 26 C -0.097 4.097 27 C -0.133 4.133 28 C -0.115 4.115 29 C -0.131 4.131 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.250 0.750 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.123 0.877 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.061 0.939 41 H 0.007 0.993 42 H 0.056 0.944 43 H 0.201 0.799 44 H 0.164 0.836 45 H 0.183 0.817 46 H 0.181 0.819 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 9.342 -27.917 -1.379 29.471 hybrid contribution -1.476 1.308 0.716 2.099 sum 7.866 -26.609 -0.662 27.755 Atomic orbital electron populations 1.21127 0.88407 1.04297 1.04002 1.20910 0.97752 0.90962 0.87084 1.20710 0.95793 0.93273 1.12509 1.18310 0.86663 0.84172 0.76234 1.90730 1.15250 1.87605 1.51406 1.45742 1.11411 1.04959 1.73267 1.21725 0.95910 0.82000 0.99868 1.21344 0.92871 0.84269 0.97539 0.92858 1.22615 1.01744 0.96832 0.94002 1.22875 0.98142 0.95997 1.00211 1.21335 0.93009 0.96647 0.84456 1.44749 1.63895 1.15683 1.09148 1.19322 1.20522 1.09131 0.87649 0.90401 1.25640 1.00458 1.00060 0.99379 1.70145 1.42617 1.23821 1.22906 0.85176 0.77614 0.78252 0.78908 1.20911 1.22220 1.19824 1.23298 0.89614 0.97422 0.90490 1.67991 1.39786 0.97930 1.14797 1.19451 0.90225 0.93295 0.96945 1.21071 1.01226 0.89983 1.01362 1.21448 0.94900 0.98582 0.94801 1.21404 0.94226 0.99433 0.98207 1.21414 1.01555 0.90509 0.97983 1.18911 0.94046 0.94649 1.05512 0.89845 0.90089 0.88755 0.74958 0.94116 0.94428 0.87679 0.91698 0.91116 0.90026 0.93882 0.99277 0.94362 0.79874 0.83582 0.81690 0.81896 0.83009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.74 8.48 71.24 0.60 -2.14 16 2 C 0.04 1.00 5.99 -19.12 -0.11 0.89 16 3 C -0.22 -5.63 5.89 -20.00 -0.12 -5.75 16 4 C 0.56 17.44 7.72 86.76 0.67 18.11 16 5 O -0.57 -21.91 13.45 -3.91 -0.05 -21.96 16 6 N -0.70 -20.15 5.28 -466.07 -2.46 -22.61 16 7 C 0.13 4.99 5.07 86.38 0.44 5.42 16 8 C 0.15 5.54 3.22 45.34 0.15 5.69 16 9 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 10 C -0.11 -3.42 6.10 31.78 0.19 -3.23 16 11 C -0.13 -4.61 7.09 31.99 0.23 -4.39 16 12 C 0.17 8.28 5.47 86.85 0.48 8.76 16 13 N -0.61 -30.45 3.13 -668.27 -2.09 -32.54 16 14 C -0.24 -13.18 9.77 84.03 0.82 -12.36 16 15 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 16 C -0.06 -3.55 5.48 84.86 0.46 -3.08 16 17 N -0.95 -57.14 10.46 21.65 0.23 -56.92 16 18 Si 0.97 46.51 29.55 68.60 2.03 48.54 16 19 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 20 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 21 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 22 C 0.17 3.69 10.67 85.41 0.91 4.60 16 23 N -0.50 -11.76 10.30 -187.69 -1.93 -13.70 16 24 C 0.12 2.65 6.61 40.28 0.27 2.92 16 25 C -0.12 -1.86 9.97 22.34 0.22 -1.63 16 26 C -0.08 -0.78 9.94 22.04 0.22 -0.56 16 27 C -0.12 -1.12 9.96 22.05 0.22 -0.90 16 28 C -0.10 -1.38 9.32 22.35 0.21 -1.17 16 29 C -0.13 -2.72 5.74 -21.28 -0.12 -2.84 16 30 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 31 H 0.08 2.27 5.95 -2.39 -0.01 2.26 16 32 H 0.09 1.46 6.20 -2.39 -0.01 1.44 16 33 H 0.41 8.72 6.40 -92.71 -0.59 8.12 16 34 H 0.04 1.77 8.08 -2.39 -0.02 1.75 16 35 H 0.04 1.65 7.92 -2.39 -0.02 1.63 16 36 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.06 1.96 7.81 -2.39 -0.02 1.94 16 38 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.04 2.37 6.70 -2.39 -0.02 2.36 16 41 H -0.01 -0.59 8.12 -2.39 -0.02 -0.61 16 42 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 43 H 0.18 2.93 6.42 -2.91 -0.02 2.91 16 44 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 45 H 0.17 0.50 8.06 -2.91 -0.02 0.48 16 46 H 0.16 0.50 8.06 -2.91 -0.02 0.47 16 47 H 0.15 1.54 6.30 -2.91 -0.02 1.53 16 Total: -1.00 -75.76 376.87 1.86 -73.90 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.41 Total: 16.94 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 5.73 Total: 8.35 kcal Atomic # 7 Polarization: -119.51 SS G_CDS: -6.26 Total: -125.77 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.05 Total: -21.96 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -75.76 1.86 -73.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028036674.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.659 kcal (2) G-P(sol) polarization free energy of solvation -75.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds