Wall clock time and date at job start Tue Mar 31 2020 22:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99609 * 2 1 4 4 H 1.48500 * 109.47262 * 267.65420 * 3 2 1 5 5 H 1.48504 * 109.47324 * 27.65304 * 3 2 1 6 6 H 1.48505 * 109.47084 * 147.65466 * 3 2 1 7 7 C 1.38808 * 120.00255 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99743 * 345.10532 * 7 2 1 9 9 N 1.36937 * 119.99999 * 165.10222 * 7 2 1 10 10 C 1.47423 * 125.64586 * 326.60020 * 9 7 2 11 11 C 1.54918 * 104.83109 * 155.89457 * 10 9 7 12 12 C 1.55155 * 101.57781 * 37.00795 * 11 10 9 13 13 C 1.47020 * 125.65001 * 146.62622 * 9 7 2 14 14 H 1.08994 * 110.01157 * 300.52939 * 13 9 7 15 15 C 1.53000 * 109.88201 * 61.62056 * 13 9 7 16 16 N 1.46504 * 109.47105 * 295.92109 * 15 13 9 17 17 C 1.34780 * 119.99828 * 173.26099 * 16 15 13 18 18 O 1.21585 * 120.00103 * 0.02562 * 17 16 15 19 19 C 1.47574 * 119.99766 * 180.02562 * 17 16 15 20 20 C 1.39662 * 120.19071 * 338.52077 * 19 17 16 21 21 C 1.37834 * 119.91297 * 180.25524 * 20 19 17 22 22 C 1.38529 * 120.31228 * 359.74235 * 21 20 19 23 23 C 1.38074 * 120.39393 * 0.02562 * 22 21 20 24 24 C 1.38765 * 120.07205 * 359.97438 * 23 22 21 25 25 N 1.39659 * 120.15382 * 179.97438 * 24 23 22 26 26 C 1.36655 * 125.67563 * 124.52645 * 25 24 23 27 27 C 1.34812 * 108.19015 * 180.16915 * 26 25 24 28 28 C 1.40990 * 107.48976 * 359.58100 * 27 26 25 29 29 C 1.34814 * 107.48280 * 0.25881 * 28 27 26 30 30 H 0.97004 * 120.00595 * 0.02562 * 1 2 3 31 31 H 1.09002 * 110.37004 * 37.05387 * 10 9 7 32 32 H 1.09002 * 110.46512 * 274.77860 * 10 9 7 33 33 H 1.09001 * 111.00349 * 278.93450 * 11 10 9 34 34 H 1.09004 * 111.00246 * 155.08442 * 11 10 9 35 35 H 1.09003 * 110.71449 * 206.12959 * 12 11 10 36 36 H 1.08999 * 110.71654 * 82.86724 * 12 11 10 37 37 H 1.09003 * 109.47133 * 175.92163 * 15 13 9 38 38 H 1.09002 * 109.47421 * 55.91830 * 15 13 9 39 39 H 0.97002 * 119.99841 * 353.26743 * 16 15 13 40 40 H 1.07994 * 120.04620 * 359.97438 * 20 19 17 41 41 H 1.07996 * 119.84401 * 179.72415 * 21 20 19 42 42 H 1.07998 * 119.80463 * 180.02562 * 22 21 20 43 43 H 1.08001 * 119.96458 * 179.97438 * 23 22 21 44 44 H 1.07996 * 125.90724 * 0.02562 * 26 25 24 45 45 H 1.08000 * 126.25482 * 179.84070 * 27 26 25 46 46 H 1.07996 * 126.26072 * 180.28586 * 28 27 26 47 47 H 1.07998 * 125.90343 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.5472 2.0179 -1.3989 5 1 1.4235 2.6666 0.6498 6 1 3.5220 1.4552 0.7491 7 6 2.0103 -1.2021 0.0005 8 1 1.4975 -2.1216 0.2414 9 7 3.3451 -1.2221 -0.3043 10 6 4.0212 -0.3280 -1.2619 11 6 5.5020 -0.3069 -0.8073 12 6 5.7079 -1.7748 -0.3487 13 6 4.3413 -2.1391 0.2686 14 1 4.3797 -2.0189 1.3512 15 6 3.9806 -3.5841 -0.0818 16 7 2.7040 -3.9347 0.5458 17 6 2.1174 -5.1154 0.2659 18 8 2.6479 -5.8897 -0.5069 19 6 0.8312 -5.4683 0.8976 20 6 0.4352 -4.8425 2.0817 21 6 -0.7648 -5.1803 2.6696 22 6 -1.5838 -6.1347 2.0887 23 6 -1.2071 -6.7579 0.9156 24 6 -0.0024 -6.4302 0.3099 25 7 0.3805 -7.0599 -0.8764 26 6 0.7102 -6.4292 -2.0430 27 6 1.0186 -7.3704 -2.9576 28 6 0.8846 -8.6276 -2.3337 29 6 0.4935 -8.4091 -1.0621 30 1 -0.4851 0.8400 -0.0004 31 1 3.5946 0.6738 -1.2118 32 1 3.9409 -0.7234 -2.2745 33 1 5.6462 0.3854 0.0222 34 1 6.1625 -0.0610 -1.6388 35 1 6.4982 -1.8378 0.3993 36 1 5.9298 -2.4174 -1.2007 37 1 4.7606 -4.2521 0.2836 38 1 3.8933 -3.6847 -1.1636 39 1 2.2810 -3.3170 1.1626 40 1 1.0705 -4.0982 2.5385 41 1 -1.0679 -4.6989 3.5876 42 1 -2.5226 -6.3928 2.5562 43 1 -1.8508 -7.5013 0.4690 44 1 0.7196 -5.3615 -2.2050 45 1 1.3181 -7.1935 -3.9800 46 1 1.0629 -9.5897 -2.7906 47 1 0.3029 -9.1689 -0.3187 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028113848.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:10 Heat of formation + Delta-G solvation = 93.006649 kcal Electronic energy + Delta-G solvation = -30003.032891 eV Core-core repulsion = 26153.298190 eV Total energy + Delta-G solvation = -3849.734700 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.36874 -39.49413 -38.41119 -37.64615 -34.16216 -32.87965 -32.72499 -31.51786 -30.04357 -29.34685 -28.61884 -28.43986 -25.26456 -24.21959 -23.18468 -22.75499 -21.06664 -20.19269 -19.96799 -19.86930 -19.49382 -18.27753 -17.46568 -16.53335 -16.32620 -15.91040 -15.16099 -15.03815 -14.75250 -14.58539 -14.38769 -13.92334 -13.64447 -13.35422 -13.26573 -13.12695 -13.10907 -12.64102 -12.49852 -12.22106 -12.02611 -11.97893 -11.91187 -11.71578 -11.43877 -11.39219 -11.36211 -10.97811 -10.76811 -10.53660 -10.26951 -9.87692 -9.54492 -9.49304 -9.26518 -9.06586 -8.67027 -8.43498 -8.07800 -7.72561 -6.96682 -6.07608 -3.52402 0.80093 1.14464 2.64959 3.08784 3.19234 3.23971 3.37827 3.42344 3.44545 3.58106 3.88743 4.42272 4.74371 4.79616 4.86791 4.97055 5.07797 5.15545 5.24868 5.26468 5.31109 5.39392 5.46455 5.51700 5.67982 5.74557 5.77404 5.83836 5.88256 5.97141 6.03579 6.06159 6.16115 6.17280 6.20679 6.28610 6.32856 6.35305 6.49628 6.57923 6.61836 6.68437 6.78454 6.79588 6.97308 7.31323 7.53645 7.75501 7.81030 8.01751 8.21268 8.64255 8.71331 9.55106 10.12405 11.06661 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012118 B = 0.004012 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.083824 B = 6977.495985 C = 8056.825121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.032 3.968 3 Si 0.897 3.103 4 H -0.286 1.286 5 H -0.306 1.306 6 H -0.272 1.272 7 C -0.255 4.255 8 H 0.091 0.909 9 N -0.602 5.602 10 C 0.113 3.887 11 C -0.135 4.135 12 C -0.121 4.121 13 C 0.144 3.856 14 H 0.048 0.952 15 C 0.118 3.882 16 N -0.700 5.700 17 C 0.545 3.455 18 O -0.530 6.530 19 C -0.125 4.125 20 C -0.066 4.066 21 C -0.120 4.120 22 C -0.086 4.086 23 C -0.129 4.129 24 C 0.171 3.829 25 N -0.397 5.397 26 C 0.043 3.957 27 C -0.207 4.207 28 C -0.193 4.193 29 C -0.016 4.016 30 H 0.265 0.735 31 H 0.043 0.957 32 H 0.032 0.968 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.067 0.933 39 H 0.411 0.589 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.133 0.867 44 H 0.153 0.847 45 H 0.132 0.868 46 H 0.132 0.868 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.865 -10.964 3.972 11.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.168 4.168 3 Si 0.730 3.270 4 H -0.215 1.215 5 H -0.234 1.234 6 H -0.197 1.197 7 C -0.383 4.383 8 H 0.109 0.891 9 N -0.328 5.328 10 C -0.012 4.012 11 C -0.174 4.174 12 C -0.159 4.159 13 C 0.037 3.963 14 H 0.065 0.935 15 C -0.008 4.008 16 N -0.353 5.353 17 C 0.330 3.670 18 O -0.408 6.408 19 C -0.129 4.129 20 C -0.085 4.085 21 C -0.139 4.139 22 C -0.105 4.105 23 C -0.148 4.148 24 C 0.079 3.921 25 N -0.070 5.070 26 C -0.085 4.085 27 C -0.230 4.230 28 C -0.217 4.217 29 C -0.142 4.142 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.250 0.750 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.151 0.849 44 H 0.170 0.830 45 H 0.150 0.850 46 H 0.150 0.850 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.928 -11.248 3.716 12.001 hybrid contribution 0.183 1.466 0.200 1.491 sum 2.111 -9.782 3.916 10.746 Atomic orbital electron populations 1.69771 1.05664 1.26845 1.52289 1.25349 0.95204 0.97918 0.98358 0.86673 0.79334 0.83852 0.77115 1.21450 1.23438 1.19743 1.18660 0.81133 0.93955 1.44557 0.89136 1.44695 1.04556 1.38916 1.44636 1.21980 0.90699 0.95006 0.93465 1.22773 0.97517 0.96485 1.00601 1.22486 0.96259 0.96775 1.00413 1.21258 0.89155 0.89115 0.96767 0.93452 1.21950 0.83866 0.96645 0.98345 1.46144 1.23792 1.18200 1.47180 1.18059 0.84415 0.82425 0.82081 1.90831 1.64620 1.50105 1.35278 1.20138 0.95720 0.99965 0.97110 1.21332 0.96589 0.96916 0.93638 1.21187 0.94213 0.97720 1.00744 1.21171 0.99464 0.95354 0.94488 1.21063 0.94582 1.02086 0.97064 1.17608 0.93147 0.94552 0.86809 1.41156 1.52328 1.05937 1.07588 1.21702 1.04302 0.98217 0.84286 1.20735 1.10315 0.92389 0.99593 1.20771 1.08898 0.97872 0.94195 1.21672 1.10458 0.83384 0.98707 0.92547 0.93952 0.95037 0.91584 0.91488 0.91353 0.91200 0.92831 0.91493 0.74983 0.84561 0.84801 0.84912 0.84915 0.82952 0.85021 0.85033 0.82781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.15 13.97 55.49 0.78 -25.37 16 2 C 0.03 0.88 5.47 -17.43 -0.10 0.79 16 3 Si 0.90 21.74 24.76 -169.99 -4.21 17.54 16 4 H -0.29 -6.87 6.64 56.52 0.38 -6.49 16 5 H -0.31 -7.57 7.11 56.52 0.40 -7.17 16 6 H -0.27 -6.38 7.09 56.52 0.40 -5.98 16 7 C -0.26 -6.53 9.60 -15.06 -0.14 -6.67 16 8 H 0.09 2.38 5.43 -52.49 -0.29 2.09 16 9 N -0.60 -13.30 2.74 -162.58 -0.45 -13.75 16 10 C 0.11 2.33 6.22 -2.52 -0.02 2.31 16 11 C -0.14 -2.20 7.09 -24.58 -0.17 -2.38 16 12 C -0.12 -1.80 6.48 -24.90 -0.16 -1.96 16 13 C 0.14 2.60 3.31 -66.96 -0.22 2.37 16 14 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 15 C 0.12 2.10 5.16 -4.04 -0.02 2.08 16 16 N -0.70 -12.85 4.29 -61.33 -0.26 -13.12 16 17 C 0.54 10.33 7.13 -12.45 -0.09 10.24 16 18 O -0.53 -11.27 13.52 5.29 0.07 -11.20 16 19 C -0.12 -2.10 5.86 -104.82 -0.61 -2.72 16 20 C -0.07 -0.94 9.40 -39.20 -0.37 -1.31 16 21 C -0.12 -1.43 10.02 -39.62 -0.40 -1.83 16 22 C -0.09 -0.95 10.03 -39.53 -0.40 -1.34 16 23 C -0.13 -1.65 9.75 -39.45 -0.38 -2.03 16 24 C 0.17 2.75 5.87 -83.36 -0.49 2.26 16 25 N -0.40 -6.72 2.06 -60.69 -0.13 -6.85 16 26 C 0.04 0.78 8.33 -16.62 -0.14 0.64 16 27 C -0.21 -3.46 10.86 -39.75 -0.43 -3.89 16 28 C -0.19 -2.93 10.86 -39.75 -0.43 -3.37 16 29 C -0.02 -0.24 11.20 -16.62 -0.19 -0.43 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.04 0.96 2.59 -51.93 -0.13 0.83 16 32 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.98 7.85 -51.93 -0.41 0.57 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 1.33 8.11 -51.93 -0.42 0.91 16 39 H 0.41 7.59 4.77 -40.82 -0.19 7.39 16 40 H 0.14 1.82 6.92 -52.49 -0.36 1.45 16 41 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 42 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 43 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 44 H 0.15 2.94 8.03 -52.49 -0.42 2.52 16 45 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 46 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 47 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 374.02 15.07 5.64 5.64 Total: -1.00 -32.04 374.02 -9.78 -41.82 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -6.46 Total: 12.53 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -4.76 Total: -7.24 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: -0.06 Total: -59.09 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.07 Total: -11.20 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.21 Total: 17.54 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.04 -9.78 -41.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028113848.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.830 kcal (2) G-P(sol) polarization free energy of solvation -32.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds