Wall clock time and date at job start Tue Mar 31 2020 22:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 119.99904 * 2 1 4 4 H 1.48501 * 109.47237 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47267 * 299.99832 * 3 2 1 6 6 H 1.48494 * 109.47391 * 60.00011 * 3 2 1 7 7 C 1.38811 * 120.00483 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00626 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99530 * 359.97438 * 7 2 1 10 10 C 1.47420 * 125.64771 * 346.27171 * 9 7 2 11 11 C 1.54911 * 104.92483 * 204.09143 * 10 9 7 12 12 C 1.55271 * 101.52965 * 323.12655 * 11 10 9 13 13 C 1.47023 * 125.64364 * 166.29381 * 9 7 2 14 14 H 1.08997 * 109.88483 * 59.50817 * 13 9 7 15 15 C 1.52998 * 109.88399 * 298.33764 * 13 9 7 16 16 N 1.46504 * 109.46991 * 175.50576 * 15 13 9 17 17 C 1.34772 * 119.99676 * 184.66328 * 16 15 13 18 18 O 1.21731 * 120.00534 * 359.97438 * 17 16 15 19 19 C 1.46399 * 119.99888 * 179.97438 * 17 16 15 20 20 N 1.37627 * 126.32471 * 0.02562 * 19 17 16 21 21 H 0.97001 * 125.55592 * 359.95915 * 20 19 17 22 22 C 1.35646 * 108.89855 * 179.97438 * 20 19 17 23 23 C 1.35116 * 109.22291 * 0.02562 * 22 20 19 24 24 C 1.39099 * 126.32838 * 179.70982 * 19 17 16 25 25 C 1.48174 * 126.63317 * 0.03616 * 24 19 17 26 26 C 1.39444 * 120.13111 * 309.72041 * 25 24 19 27 27 C 1.37993 * 119.86616 * 179.79179 * 26 25 24 28 28 C 1.38338 * 120.13157 * 0.46654 * 27 26 25 29 29 C 1.38340 * 120.26599 * 359.78476 * 28 27 26 30 30 C 1.37989 * 120.13061 * 359.97438 * 29 28 27 31 31 H 0.97000 * 120.00236 * 0.02562 * 1 2 3 32 32 H 1.08998 * 110.36856 * 322.98395 * 10 9 7 33 33 H 1.09001 * 110.36607 * 85.20222 * 10 9 7 34 34 H 1.09002 * 111.00372 * 81.12557 * 11 10 9 35 35 H 1.09005 * 111.00326 * 204.97200 * 11 10 9 36 36 H 1.08999 * 110.62880 * 277.00832 * 12 11 10 37 37 H 1.09000 * 110.75587 * 153.77639 * 12 11 10 38 38 H 1.09000 * 109.47113 * 295.50467 * 15 13 9 39 39 H 1.08998 * 109.47033 * 55.50592 * 15 13 9 40 40 H 0.96996 * 120.00160 * 4.66169 * 16 15 13 41 41 H 1.07998 * 125.38823 * 179.97438 * 22 20 19 42 42 H 1.07997 * 126.10601 * 180.02562 * 23 22 20 43 43 H 1.08008 * 120.06915 * 0.02562 * 26 25 24 44 44 H 1.08006 * 119.93367 * 180.21232 * 27 26 25 45 45 H 1.07997 * 119.86607 * 179.76499 * 28 27 26 46 46 H 1.08002 * 119.93322 * 179.97438 * 29 28 27 47 47 H 1.08004 * 120.06391 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1117 -2.5501 0.2866 11 6 -0.2602 -4.0146 0.7691 12 6 0.7666 -4.7457 -0.1375 13 6 1.9023 -3.7106 -0.2808 14 1 2.6956 -3.9294 0.4339 15 6 2.4584 -3.7423 -1.7058 16 7 3.1253 -5.0253 -1.9414 17 6 3.7751 -5.2439 -3.1017 18 8 3.8075 -4.3756 -3.9542 19 6 4.4420 -6.5258 -3.3369 20 7 4.4873 -7.5926 -2.4686 21 1 4.0792 -7.6217 -1.5891 22 6 5.1958 -8.5967 -3.0428 23 6 5.6124 -8.2038 -4.2666 24 6 5.1417 -6.8928 -4.4817 25 6 5.3546 -6.0642 -5.6915 26 6 4.2733 -5.4370 -6.3095 27 6 4.4785 -4.6631 -7.4335 28 6 5.7523 -4.5167 -7.9528 29 6 6.8282 -5.1408 -7.3471 30 6 6.6362 -5.9131 -6.2199 31 1 -0.4850 0.8400 -0.0004 32 1 -0.4234 -1.8591 1.0698 33 1 -0.6984 -2.3872 -0.6175 34 1 0.0113 -4.1089 1.8206 35 1 -1.2709 -4.3832 0.5936 36 1 0.3276 -4.9734 -1.1088 37 1 1.1305 -5.6530 0.3446 38 1 1.6416 -3.6213 -2.4174 39 1 3.1752 -2.9312 -1.8342 40 1 3.0992 -5.7173 -1.2622 41 1 5.3960 -9.5578 -2.5927 42 1 6.1972 -8.7914 -4.9588 43 1 3.2778 -5.5536 -5.9071 44 1 3.6422 -4.1740 -7.9110 45 1 5.9073 -3.9131 -8.8348 46 1 7.8203 -5.0232 -7.7574 47 1 7.4769 -6.4002 -5.7481 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028255489.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:15 Heat of formation + Delta-G solvation = 58.253582 kcal Electronic energy + Delta-G solvation = -28776.194875 eV Core-core repulsion = 24924.953168 eV Total energy + Delta-G solvation = -3851.241707 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.44395 -38.98575 -38.66516 -37.57317 -34.39445 -32.64490 -32.44101 -30.79105 -30.40697 -29.62129 -29.01217 -28.12360 -25.03734 -24.16875 -23.04528 -22.41095 -21.73575 -20.60659 -20.27052 -19.80576 -19.27825 -18.69804 -16.80734 -16.54144 -15.80609 -15.78340 -15.30584 -14.93584 -14.78253 -14.60530 -14.29366 -14.03797 -13.78703 -13.67660 -13.45429 -13.22533 -12.95707 -12.83753 -12.79007 -12.26380 -12.13427 -11.93868 -11.81703 -11.41006 -11.07723 -10.97465 -10.92753 -10.83044 -10.27998 -10.14101 -10.00934 -9.92349 -9.82658 -9.72255 -9.37845 -8.83399 -8.71751 -8.63124 -8.54461 -7.99271 -6.88867 -5.79825 -3.16774 1.08380 1.61408 1.71149 2.62157 2.90424 3.34220 3.39762 3.45610 3.47199 3.48672 4.00875 4.46274 4.71369 4.90640 4.94519 5.05064 5.13044 5.23997 5.27027 5.28318 5.32865 5.42950 5.56475 5.59132 5.63811 5.72319 5.73924 5.94337 5.98550 6.07003 6.14302 6.15702 6.21235 6.39606 6.44077 6.47849 6.53567 6.56750 6.62949 6.67217 6.72836 6.74685 6.84815 6.99128 7.15191 7.18476 7.47648 7.56401 7.71008 7.76111 8.21631 8.39641 9.14042 9.74438 10.40600 11.31884 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011490 B = 0.003033 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.366483 B = 9230.114277 C =10895.093397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.000 4.000 3 Si 0.910 3.090 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.234 4.234 8 H 0.077 0.923 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.148 4.148 12 C -0.128 4.128 13 C 0.152 3.848 14 H 0.036 0.964 15 C 0.111 3.889 16 N -0.723 5.723 17 C 0.575 3.425 18 O -0.515 6.515 19 C -0.033 4.033 20 N -0.538 5.538 21 H 0.418 0.582 22 C 0.019 3.981 23 C -0.196 4.196 24 C -0.049 4.049 25 C -0.017 4.017 26 C -0.063 4.063 27 C -0.124 4.124 28 C -0.121 4.121 29 C -0.131 4.131 30 C -0.107 4.107 31 H 0.253 0.747 32 H 0.074 0.926 33 H 0.026 0.974 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.387 0.613 41 H 0.171 0.829 42 H 0.144 0.856 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.116 0.884 46 H 0.118 0.882 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.949 -19.524 -7.327 22.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.363 4.363 8 H 0.094 0.906 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.166 4.166 13 C 0.043 3.957 14 H 0.054 0.946 15 C -0.014 4.014 16 N -0.374 5.374 17 C 0.361 3.639 18 O -0.391 6.391 19 C -0.147 4.147 20 N -0.134 5.134 21 H 0.255 0.745 22 C -0.116 4.116 23 C -0.220 4.220 24 C -0.058 4.058 25 C -0.017 4.017 26 C -0.081 4.081 27 C -0.142 4.142 28 C -0.140 4.140 29 C -0.149 4.149 30 C -0.125 4.125 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.220 0.780 41 H 0.188 0.812 42 H 0.162 0.838 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.134 0.866 46 H 0.136 0.864 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.796 -18.557 -7.762 21.954 hybrid contribution 0.254 0.510 0.776 0.963 sum 9.051 -18.047 -6.985 21.364 Atomic orbital electron populations 1.69940 1.05024 1.25245 1.55924 1.24896 0.95682 0.97883 1.01305 0.86072 0.78973 0.83612 0.77285 1.20344 1.21522 1.21687 1.19037 0.90445 0.82139 1.44651 0.90564 1.44494 1.05855 1.00740 1.80157 1.21475 0.84670 0.90258 0.98944 1.23025 0.97424 0.99631 0.98611 1.22647 0.97186 0.96904 0.99820 1.21127 0.94340 0.88151 0.92054 0.94596 1.22276 0.96732 0.83043 0.99341 1.46068 1.54982 1.18788 1.17598 1.17033 0.78791 0.85309 0.82732 1.90906 1.60299 1.43975 1.43897 1.20682 1.10487 0.90245 0.93252 1.41978 1.42669 1.12265 1.16523 0.74489 1.21867 1.00085 0.94121 0.95548 1.20879 1.07629 0.95907 0.97603 1.18558 1.00274 0.94421 0.92500 1.18067 0.93308 0.97254 0.93098 1.21129 0.98620 0.94626 0.93728 1.21045 0.97116 0.99182 0.96871 1.21130 0.92979 0.99817 1.00024 1.20952 0.98632 0.98723 0.96583 1.21093 0.95919 0.99236 0.96245 0.93618 0.90730 0.95635 0.92301 0.92277 0.91791 0.92596 0.91779 0.90858 0.78044 0.81154 0.83847 0.86281 0.86292 0.86550 0.86419 0.86357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.46 10.54 55.49 0.58 -25.88 16 2 C 0.00 -0.01 5.47 -17.43 -0.10 -0.11 16 3 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.23 -6.39 9.73 -15.06 -0.15 -6.54 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.59 -14.39 3.13 -162.57 -0.51 -14.89 16 10 C 0.17 4.01 5.42 -2.53 -0.01 4.00 16 11 C -0.15 -2.63 7.10 -24.52 -0.17 -2.80 16 12 C -0.13 -2.02 6.07 -24.83 -0.15 -2.17 16 13 C 0.15 2.91 3.22 -66.95 -0.22 2.70 16 14 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 15 C 0.11 2.10 5.09 -4.04 -0.02 2.08 16 16 N -0.72 -10.66 5.40 -61.70 -0.33 -10.99 16 17 C 0.58 9.31 7.76 -12.98 -0.10 9.21 16 18 O -0.52 -10.28 13.43 5.16 0.07 -10.21 16 19 C -0.03 -0.43 7.07 -81.66 -0.58 -1.01 16 20 N -0.54 -4.81 5.98 -9.24 -0.06 -4.86 16 21 H 0.42 2.49 8.18 -40.82 -0.33 2.16 16 22 C 0.02 0.15 11.86 -16.98 -0.20 -0.06 16 23 C -0.20 -1.97 10.73 -39.67 -0.43 -2.40 16 24 C -0.05 -0.65 5.67 -104.47 -0.59 -1.24 16 25 C -0.02 -0.24 5.27 -104.92 -0.55 -0.79 16 26 C -0.06 -0.94 7.63 -39.22 -0.30 -1.24 16 27 C -0.12 -1.68 10.03 -39.63 -0.40 -2.08 16 28 C -0.12 -1.47 10.04 -39.51 -0.40 -1.87 16 29 C -0.13 -1.54 10.03 -39.64 -0.40 -1.94 16 30 C -0.11 -1.35 9.73 -39.22 -0.38 -1.73 16 31 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.07 1.95 6.86 -51.93 -0.36 1.60 16 33 H 0.03 0.65 8.08 -51.93 -0.42 0.23 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 1.01 7.78 -51.93 -0.40 0.60 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 1.34 8.03 -51.93 -0.42 0.92 16 39 H 0.07 1.62 7.86 -51.93 -0.41 1.21 16 40 H 0.39 4.34 7.37 -40.82 -0.30 4.04 16 41 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 43 H 0.12 1.88 7.36 -52.48 -0.39 1.49 16 44 H 0.12 1.42 8.06 -52.48 -0.42 0.99 16 45 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 46 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 47 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 LS Contribution 385.87 15.07 5.81 5.81 Total: -1.00 -33.54 385.87 -11.39 -44.93 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -6.80 Total: 6.95 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -5.14 Total: -7.99 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: -0.31 Total: -56.63 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.07 Total: -10.21 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.54 -11.39 -44.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028255489.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.187 kcal (2) G-P(sol) polarization free energy of solvation -33.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds