Wall clock time and date at job start Tue Mar 31 2020 22:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99548 * 2 1 4 4 H 1.48501 * 109.47449 * 354.59935 * 3 2 1 5 5 H 1.48501 * 109.47193 * 234.59290 * 3 2 1 6 6 H 1.48504 * 109.46686 * 114.59487 * 3 2 1 7 7 C 1.38803 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00292 * 8.56161 * 7 2 1 9 9 N 1.36939 * 119.99753 * 188.55993 * 7 2 1 10 10 C 1.47423 * 125.64922 * 29.03709 * 9 7 2 11 11 C 1.55126 * 104.72239 * 155.81717 * 10 9 7 12 12 C 1.55164 * 101.48758 * 37.29540 * 11 10 9 13 13 C 1.47024 * 125.64676 * 209.34354 * 9 7 2 14 14 H 1.09004 * 109.88352 * 300.44197 * 13 9 7 15 15 C 1.53000 * 109.88176 * 61.60731 * 13 9 7 16 16 N 1.46503 * 109.46946 * 300.65760 * 15 13 9 17 17 C 1.34785 * 119.99816 * 173.93353 * 16 15 13 18 18 O 1.21730 * 119.99898 * 359.97438 * 17 16 15 19 19 C 1.46391 * 119.99785 * 180.02562 * 17 16 15 20 20 N 1.37633 * 126.32818 * 0.02562 * 19 17 16 21 21 H 0.96999 * 125.55205 * 359.93744 * 20 19 17 22 22 C 1.35643 * 108.89773 * 179.97438 * 20 19 17 23 23 C 1.35124 * 109.22481 * 0.02562 * 22 20 19 24 24 C 1.39103 * 126.32603 * 179.71393 * 19 17 16 25 25 C 1.48177 * 126.62969 * 0.03222 * 24 19 17 26 26 C 1.39444 * 120.13456 * 309.72446 * 25 24 19 27 27 C 1.37988 * 119.86525 * 179.79262 * 26 25 24 28 28 C 1.38345 * 120.13233 * 0.46638 * 27 26 25 29 29 C 1.38339 * 120.26488 * 359.78382 * 28 27 26 30 30 C 1.37989 * 120.13383 * 359.97438 * 29 28 27 31 31 H 0.97003 * 119.99799 * 184.92927 * 1 2 3 32 32 H 1.09005 * 110.36272 * 274.74529 * 10 9 7 33 33 H 1.08996 * 110.36658 * 37.06668 * 10 9 7 34 34 H 1.08997 * 111.19163 * 279.18998 * 11 10 9 35 35 H 1.09000 * 110.90498 * 155.27248 * 11 10 9 36 36 H 1.08991 * 110.72000 * 205.97107 * 12 11 10 37 37 H 1.09001 * 110.71994 * 82.69449 * 12 11 10 38 38 H 1.08992 * 109.47417 * 60.66255 * 15 13 9 39 39 H 1.09004 * 109.46978 * 180.66502 * 15 13 9 40 40 H 0.96998 * 120.00539 * 353.93812 * 16 15 13 41 41 H 1.08003 * 125.38953 * 180.02562 * 22 20 19 42 42 H 1.07996 * 126.10483 * 179.97438 * 23 22 20 43 43 H 1.07998 * 120.06647 * 359.97438 * 26 25 24 44 44 H 1.07995 * 119.93536 * 180.21126 * 27 26 25 45 45 H 1.08002 * 119.86686 * 179.77027 * 28 27 26 46 46 H 1.07999 * 119.93598 * 179.97438 * 29 28 27 47 47 H 1.08001 * 120.06654 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2905 2.7434 -0.1318 5 1 3.2001 1.6410 -1.1411 6 1 3.0022 1.7551 1.2731 7 6 2.0102 -1.2021 -0.0005 8 1 1.4793 -2.1321 -0.1402 9 7 3.3682 -1.2087 0.1760 10 6 4.1402 -0.2119 0.9401 11 6 5.4350 -0.9549 1.3618 12 6 5.7149 -1.8242 0.1074 13 6 4.2984 -2.2075 -0.3705 14 1 4.0377 -3.1988 0.0002 15 6 4.2424 -2.1891 -1.8993 16 7 2.8779 -2.4875 -2.3416 17 6 2.5603 -2.4060 -3.6489 18 8 3.4070 -2.0842 -4.4621 19 6 1.1967 -2.7036 -4.0907 20 7 0.1426 -3.0763 -3.2881 21 1 0.1789 -3.1879 -2.3252 22 6 -0.9550 -3.2629 -4.0629 23 6 -0.6354 -3.0196 -5.3531 24 6 0.7255 -2.6560 -5.3986 25 6 1.5047 -2.2965 -6.6066 26 6 2.2682 -1.1298 -6.6256 27 6 2.9951 -0.8026 -7.7520 28 6 2.9599 -1.6244 -8.8643 29 6 2.2002 -2.7805 -8.8532 30 6 1.4730 -3.1209 -7.7310 31 1 -0.4850 -0.8370 0.0722 32 1 4.3797 0.6456 0.3113 33 1 3.5821 0.1064 1.8206 34 1 5.2635 -1.5786 2.2390 35 1 6.2478 -0.2504 1.5381 36 1 6.2857 -2.7136 0.3741 37 1 6.2355 -1.2447 -0.6551 38 1 4.5346 -1.2037 -2.2619 39 1 4.9254 -2.9398 -2.2970 40 1 2.2031 -2.7435 -1.6936 41 1 -1.9300 -3.5591 -3.7052 42 1 -1.3046 -3.0873 -6.1981 43 1 2.2928 -0.4851 -5.7596 44 1 3.5894 0.0990 -7.7667 45 1 3.5276 -1.3623 -9.7449 46 1 2.1763 -3.4180 -9.7246 47 1 0.8806 -4.0239 -7.7234 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028255490.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:17 Heat of formation + Delta-G solvation = 59.142717 kcal Electronic energy + Delta-G solvation = -29826.448094 eV Core-core repulsion = 25975.244943 eV Total energy + Delta-G solvation = -3851.203151 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.05394 -38.85238 -38.47759 -37.72663 -34.04514 -32.93092 -32.26323 -30.60959 -30.21181 -29.98020 -29.20011 -28.12766 -25.07590 -23.76375 -22.80251 -22.21325 -21.60689 -20.93780 -20.10570 -19.74026 -18.97649 -18.39985 -17.44001 -16.35034 -15.86805 -15.53396 -15.18825 -15.00131 -14.86278 -14.60615 -14.36836 -13.64393 -13.57366 -13.47013 -13.31343 -13.22973 -13.02921 -12.67020 -12.62699 -12.51131 -12.35297 -12.00870 -11.78609 -11.40831 -11.16909 -11.05703 -10.90289 -10.78752 -10.68960 -10.52837 -10.05429 -9.61835 -9.52369 -9.25595 -9.06656 -8.82645 -8.56124 -8.45435 -8.21981 -7.67710 -7.13153 -6.49651 -3.56848 1.35961 1.77708 2.01801 2.96814 3.32694 3.36178 3.45694 3.61886 3.72048 3.87885 4.19775 4.47198 4.86353 5.03187 5.09890 5.19448 5.20940 5.22749 5.32548 5.32903 5.36910 5.44536 5.48017 5.57324 5.74440 5.81021 5.83692 5.90632 5.94418 6.03548 6.05874 6.17913 6.22320 6.27697 6.32293 6.35205 6.42362 6.55710 6.67685 6.68440 6.76021 6.82227 6.89959 6.98647 7.03554 7.16556 7.33235 7.54363 7.62851 8.13037 8.13966 8.73646 8.78358 9.33250 10.08659 10.95648 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012600 B = 0.003846 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.673035 B = 7279.290265 C = 7957.773552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.002 4.002 3 Si 1.062 2.938 4 H -0.300 1.300 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.324 4.324 8 H 0.063 0.937 9 N -0.603 5.603 10 C 0.109 3.891 11 C -0.131 4.131 12 C -0.124 4.124 13 C 0.143 3.857 14 H 0.043 0.957 15 C 0.118 3.882 16 N -0.699 5.699 17 C 0.578 3.422 18 O -0.539 6.539 19 C -0.023 4.023 20 N -0.528 5.528 21 H 0.421 0.579 22 C 0.021 3.979 23 C -0.199 4.199 24 C -0.061 4.061 25 C -0.006 4.006 26 C -0.062 4.062 27 C -0.125 4.125 28 C -0.126 4.126 29 C -0.133 4.133 30 C -0.109 4.109 31 H 0.260 0.740 32 H 0.025 0.975 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.403 0.597 41 H 0.169 0.831 42 H 0.141 0.859 43 H 0.120 0.880 44 H 0.117 0.883 45 H 0.114 0.886 46 H 0.116 0.884 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.792 -6.979 -8.082 11.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.204 4.204 3 Si 0.894 3.106 4 H -0.227 1.227 5 H -0.218 1.218 6 H -0.211 1.211 7 C -0.451 4.451 8 H 0.080 0.920 9 N -0.330 5.330 10 C -0.016 4.016 11 C -0.170 4.170 12 C -0.162 4.162 13 C 0.036 3.964 14 H 0.061 0.939 15 C -0.008 4.008 16 N -0.351 5.351 17 C 0.365 3.635 18 O -0.417 6.417 19 C -0.138 4.138 20 N -0.122 5.122 21 H 0.259 0.741 22 C -0.115 4.115 23 C -0.223 4.223 24 C -0.070 4.070 25 C -0.007 4.007 26 C -0.080 4.080 27 C -0.143 4.143 28 C -0.144 4.144 29 C -0.151 4.151 30 C -0.127 4.127 31 H 0.070 0.930 32 H 0.042 0.958 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.241 0.759 41 H 0.186 0.814 42 H 0.159 0.841 43 H 0.138 0.862 44 H 0.135 0.865 45 H 0.132 0.868 46 H 0.134 0.866 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.136 -5.132 -8.504 10.759 hybrid contribution -0.239 -1.782 0.941 2.029 sum 3.897 -6.914 -7.564 10.963 Atomic orbital electron populations 1.70969 1.05834 1.29348 1.49385 1.26142 0.96363 1.01301 0.96568 0.83893 0.73974 0.76069 0.76695 1.22726 1.21827 1.21121 1.19710 0.79984 0.93929 1.51513 0.91999 1.44809 1.02652 1.28350 1.57186 1.22213 0.91760 0.92533 0.95049 1.22769 0.98039 0.98770 0.97387 1.22521 0.96017 0.99722 0.97947 1.21336 0.90333 0.94347 0.90416 0.93948 1.21898 0.82324 1.00236 0.96294 1.45969 1.13606 1.68464 1.07100 1.17007 0.85618 0.78076 0.82842 1.90812 1.48764 1.49021 1.53094 1.20583 0.89101 1.13496 0.90582 1.42033 1.08618 1.51697 1.09891 0.74100 1.21845 0.91876 1.06721 0.91074 1.20784 0.95098 1.10105 0.96299 1.18479 0.93607 1.04737 0.90192 1.18088 0.96498 0.94502 0.91602 1.21190 0.93915 0.95799 0.97110 1.21010 0.99842 0.99963 0.93534 1.21074 0.99765 0.95372 0.98211 1.20912 0.98615 0.97501 0.98042 1.21097 0.99786 0.99110 0.92746 0.92974 0.95783 0.92158 0.91400 0.91646 0.91434 0.91254 0.91756 0.93000 0.75903 0.81357 0.84072 0.86163 0.86510 0.86776 0.86611 0.86423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.10 13.70 55.49 0.76 -25.34 16 2 C 0.00 -0.04 5.50 -17.43 -0.10 -0.14 16 3 Si 1.06 25.81 24.72 -169.99 -4.20 21.61 16 4 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 5 H -0.29 -7.13 7.06 56.52 0.40 -6.73 16 6 H -0.28 -6.30 5.58 56.52 0.32 -5.98 16 7 C -0.32 -7.98 8.49 -15.06 -0.13 -8.11 16 8 H 0.06 1.55 6.80 -52.49 -0.36 1.19 16 9 N -0.60 -13.11 2.86 -162.44 -0.47 -13.57 16 10 C 0.11 2.19 4.52 -2.41 -0.01 2.18 16 11 C -0.13 -2.03 7.10 -24.46 -0.17 -2.20 16 12 C -0.12 -1.83 6.47 -24.89 -0.16 -1.99 16 13 C 0.14 2.58 3.37 -66.95 -0.23 2.36 16 14 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 15 C 0.12 2.21 5.22 -4.04 -0.02 2.18 16 16 N -0.70 -13.57 4.80 -61.70 -0.30 -13.86 16 17 C 0.58 11.71 7.76 -12.98 -0.10 11.61 16 18 O -0.54 -11.88 13.41 5.16 0.07 -11.81 16 19 C -0.02 -0.42 7.07 -81.66 -0.58 -0.99 16 20 N -0.53 -8.28 5.98 -9.24 -0.06 -8.34 16 21 H 0.42 6.22 8.18 -40.82 -0.33 5.89 16 22 C 0.02 0.28 11.86 -16.97 -0.20 0.08 16 23 C -0.20 -2.90 10.73 -39.67 -0.43 -3.32 16 24 C -0.06 -1.07 5.67 -104.47 -0.59 -1.66 16 25 C -0.01 -0.11 5.27 -104.91 -0.55 -0.66 16 26 C -0.06 -1.10 7.63 -39.22 -0.30 -1.40 16 27 C -0.13 -1.91 10.03 -39.63 -0.40 -2.31 16 28 C -0.13 -1.69 10.04 -39.50 -0.40 -2.09 16 29 C -0.13 -1.74 10.03 -39.64 -0.40 -2.14 16 30 C -0.11 -1.60 9.74 -39.22 -0.38 -1.98 16 31 H 0.26 7.19 8.73 -40.82 -0.36 6.83 16 32 H 0.02 0.51 5.44 -51.93 -0.28 0.23 16 33 H 0.06 1.28 6.63 -51.93 -0.34 0.94 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.99 7.83 -51.93 -0.41 0.59 16 38 H 0.06 1.33 8.10 -51.93 -0.42 0.91 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.40 7.74 4.94 -40.82 -0.20 7.54 16 41 H 0.17 1.67 8.06 -52.48 -0.42 1.25 16 42 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 43 H 0.12 2.36 7.36 -52.49 -0.39 1.97 16 44 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 45 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 46 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 47 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 LS Contribution 374.80 15.07 5.65 5.65 Total: -1.00 -31.21 374.80 -10.31 -41.52 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -6.63 Total: 14.73 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -5.14 Total: -10.58 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: -0.06 Total: -61.11 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.07 Total: -11.81 kcal Atomic # 14 Polarization: 25.81 SS G_CDS: -4.20 Total: 21.61 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.21 -10.31 -41.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028255490.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.658 kcal (2) G-P(sol) polarization free energy of solvation -31.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds