Wall clock time and date at job start Tue Mar 31 2020 22:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99952 * 2 1 4 4 H 1.48491 * 109.47243 * 264.64136 * 3 2 1 5 5 H 1.48501 * 109.47084 * 24.64324 * 3 2 1 6 6 H 1.48501 * 109.47063 * 144.63874 * 3 2 1 7 7 C 1.38807 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00555 * 339.49821 * 7 2 1 9 9 N 1.36950 * 119.99732 * 159.49501 * 7 2 1 10 10 C 1.47423 * 125.64745 * 335.93323 * 9 7 2 11 11 C 1.54906 * 104.83279 * 204.14689 * 10 9 7 12 12 C 1.55162 * 101.58078 * 322.99423 * 11 10 9 13 13 C 1.47018 * 125.64663 * 155.95587 * 9 7 2 14 14 H 1.09002 * 110.00956 * 59.43046 * 13 9 7 15 15 C 1.52996 * 109.88454 * 298.33900 * 13 9 7 16 16 N 1.46503 * 109.47405 * 62.05845 * 15 13 9 17 17 C 1.34771 * 120.00346 * 185.92344 * 16 15 13 18 18 O 1.21645 * 120.00092 * 359.97438 * 17 16 15 19 19 C 1.47133 * 120.00271 * 180.02562 * 17 16 15 20 20 C 1.36621 * 126.97299 * 0.03862 * 19 17 16 21 21 N 1.34701 * 108.68425 * 179.97438 * 20 19 17 22 22 H 0.97003 * 124.72634 * 180.02562 * 21 20 19 23 23 C 1.36218 * 110.54819 * 359.75422 * 21 20 19 24 24 C 1.35753 * 108.67495 * 0.40621 * 23 21 20 25 25 C 1.48283 * 126.97659 * 179.87130 * 24 23 21 26 26 C 1.39396 * 120.12144 * 129.98236 * 25 24 23 27 27 C 1.38001 * 119.87004 * 180.23014 * 26 25 24 28 28 C 1.38338 * 120.12359 * 359.49663 * 27 26 25 29 29 C 1.38328 * 120.25814 * 0.22959 * 28 27 26 30 30 C 1.38006 * 120.12271 * 0.02666 * 29 28 27 31 31 H 0.97002 * 119.99916 * 0.02562 * 1 2 3 32 32 H 1.09002 * 110.36221 * 85.30811 * 10 9 7 33 33 H 1.08997 * 110.46145 * 323.03399 * 10 9 7 34 34 H 1.08997 * 111.00805 * 204.91522 * 11 10 9 35 35 H 1.09001 * 111.00051 * 81.06510 * 11 10 9 36 36 H 1.08998 * 110.72168 * 277.13449 * 12 11 10 37 37 H 1.08998 * 110.71884 * 153.86285 * 12 11 10 38 38 H 1.09001 * 109.47153 * 302.05594 * 15 13 9 39 39 H 1.09000 * 109.47661 * 182.05655 * 15 13 9 40 40 H 0.97005 * 119.99354 * 5.91983 * 16 15 13 41 41 H 1.08002 * 125.65770 * 359.97438 * 20 19 17 42 42 H 1.08002 * 125.66145 * 180.29132 * 23 21 20 43 43 H 1.07994 * 120.06609 * 359.97438 * 26 25 24 44 44 H 1.07995 * 119.93960 * 179.77107 * 27 26 25 45 45 H 1.07999 * 119.87029 * 180.25394 * 28 27 26 46 46 H 1.07991 * 119.93700 * 180.02562 * 29 28 27 47 47 H 1.08005 * 120.06046 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6109 1.9811 -1.3939 5 1 1.3956 2.6827 0.5838 6 1 3.4865 1.4755 0.8103 7 6 2.0102 -1.2021 0.0005 8 1 1.5215 -2.1077 0.3285 9 7 3.3146 -1.2399 -0.4149 10 6 3.9547 -0.2729 -1.3251 11 6 5.1401 -1.0459 -1.9550 12 6 5.6233 -1.9053 -0.7569 13 6 4.3083 -2.2517 -0.0274 14 1 3.9679 -3.2428 -0.3273 15 6 4.5272 -2.2130 1.4864 16 7 3.2732 -2.5399 2.1697 17 6 3.1943 -2.4508 3.5122 18 8 4.1644 -2.0994 4.1566 19 6 1.9350 -2.7796 4.1985 20 6 0.7665 -3.1880 3.6204 21 7 -0.1477 -3.3873 4.5894 22 1 -1.0595 -3.6811 4.4369 23 6 0.3883 -3.1245 5.8138 24 6 1.6785 -2.7358 5.6492 25 6 2.6369 -2.3512 6.7133 26 6 3.9077 -2.9228 6.7501 27 6 4.7939 -2.5648 7.7455 28 6 4.4267 -1.6327 8.6996 29 6 3.1689 -1.0580 8.6648 30 6 2.2726 -1.4124 7.6770 31 1 -0.4850 0.8401 -0.0004 32 1 4.3181 0.5901 -0.7671 33 1 3.2546 0.0437 -2.0983 34 1 5.9216 -0.3615 -2.2852 35 1 4.8024 -1.6767 -2.7772 36 1 6.2830 -1.3279 -0.1093 37 1 6.1201 -2.8102 -1.1069 38 1 4.8523 -1.2152 1.7811 39 1 5.2912 -2.9401 1.7618 40 1 2.4998 -2.8203 1.6559 41 1 0.6029 -3.3279 2.5621 42 1 -0.1281 -3.2094 6.7586 43 1 4.1968 -3.6476 6.0034 44 1 5.7774 -3.0096 7.7773 45 1 5.1249 -1.3524 9.4744 46 1 2.8879 -0.3307 9.4119 47 1 1.2907 -0.9633 7.6510 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028320889.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:31 Heat of formation + Delta-G solvation = 61.713986 kcal Electronic energy + Delta-G solvation = -29558.169816 eV Core-core repulsion = 25707.078164 eV Total energy + Delta-G solvation = -3851.091652 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.94539 -38.74574 -38.51266 -37.59517 -33.76184 -32.67400 -32.25489 -30.66214 -30.36343 -29.99447 -28.82127 -28.06297 -25.01605 -23.93855 -22.70035 -22.38113 -21.88689 -20.89678 -19.71855 -19.49899 -18.72016 -18.30403 -16.90600 -16.31745 -15.84617 -15.53658 -15.10606 -14.86973 -14.81489 -14.72396 -14.25794 -13.69470 -13.59065 -13.37686 -13.18295 -13.09643 -12.98092 -12.74426 -12.57883 -12.48857 -12.38616 -11.83597 -11.65477 -11.28021 -11.15852 -10.95058 -10.91329 -10.77932 -10.62481 -10.50166 -10.05409 -9.98735 -9.50120 -9.28277 -8.98245 -8.72128 -8.57995 -8.34278 -8.04060 -7.78488 -7.06917 -6.03932 -3.36409 1.46533 1.74769 2.18225 2.68330 3.33394 3.38642 3.48270 3.54095 3.98273 4.10505 4.25632 4.51501 4.91669 5.04707 5.13976 5.19005 5.21091 5.23965 5.27707 5.32682 5.39330 5.42031 5.55349 5.65716 5.76950 5.83738 5.88287 5.94059 5.96710 6.10407 6.13937 6.20171 6.27287 6.31068 6.35763 6.38709 6.44454 6.64578 6.65078 6.77684 6.78720 6.86627 6.88746 7.02353 7.10841 7.27754 7.31381 7.59870 7.66390 8.18655 8.41633 8.71788 9.08051 9.61236 10.13729 11.11476 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012116 B = 0.003729 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.382386 B = 7506.964473 C = 8216.302012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.032 3.968 3 Si 0.884 3.116 4 H -0.286 1.286 5 H -0.304 1.304 6 H -0.275 1.275 7 C -0.238 4.238 8 H 0.086 0.914 9 N -0.602 5.602 10 C 0.113 3.887 11 C -0.131 4.131 12 C -0.123 4.123 13 C 0.145 3.855 14 H 0.048 0.952 15 C 0.118 3.882 16 N -0.703 5.703 17 C 0.581 3.419 18 O -0.557 6.557 19 C -0.207 4.207 20 C 0.059 3.941 21 N -0.547 5.547 22 H 0.418 0.582 23 C -0.011 4.011 24 C -0.087 4.087 25 C -0.001 4.001 26 C -0.065 4.065 27 C -0.126 4.126 28 C -0.128 4.128 29 C -0.130 4.130 30 C -0.113 4.113 31 H 0.263 0.737 32 H 0.023 0.977 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.050 0.950 40 H 0.405 0.595 41 H 0.177 0.823 42 H 0.168 0.832 43 H 0.121 0.879 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.116 0.884 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.495 -8.415 9.598 13.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.168 4.168 3 Si 0.714 3.286 4 H -0.213 1.213 5 H -0.232 1.232 6 H -0.201 1.201 7 C -0.365 4.365 8 H 0.103 0.897 9 N -0.328 5.328 10 C -0.012 4.012 11 C -0.169 4.169 12 C -0.162 4.162 13 C 0.038 3.962 14 H 0.066 0.934 15 C -0.008 4.008 16 N -0.354 5.354 17 C 0.369 3.631 18 O -0.437 6.437 19 C -0.216 4.216 20 C -0.076 4.076 21 N -0.141 5.141 22 H 0.254 0.746 23 C -0.140 4.140 24 C -0.094 4.094 25 C -0.002 4.002 26 C -0.083 4.083 27 C -0.144 4.144 28 C -0.146 4.146 29 C -0.148 4.148 30 C -0.132 4.132 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.243 0.757 41 H 0.194 0.806 42 H 0.186 0.814 43 H 0.139 0.861 44 H 0.134 0.866 45 H 0.132 0.868 46 H 0.134 0.866 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.795 -8.111 10.046 13.457 hybrid contribution -0.450 1.083 -0.369 1.229 sum 3.345 -7.028 9.677 12.418 Atomic orbital electron populations 1.69785 1.05531 1.26704 1.52940 1.25034 0.95113 0.97432 0.99219 0.86929 0.79453 0.84520 0.77668 1.21312 1.23200 1.20068 1.18319 0.83268 0.94259 1.40652 0.89664 1.44867 1.07584 1.28992 1.51317 1.21924 0.93691 0.92716 0.92902 1.22715 0.98046 0.98796 0.97367 1.22520 0.96636 0.99774 0.97266 1.21324 0.89638 0.94191 0.91075 0.93393 1.21839 0.85518 0.99989 0.93452 1.45872 1.15527 1.68056 1.05991 1.17327 0.86631 0.77233 0.81906 1.90721 1.38112 1.48874 1.65969 1.20447 0.94665 1.13731 0.92783 1.22057 0.88690 1.02270 0.94608 1.41389 1.13259 1.53439 1.06003 0.74571 1.21695 0.94312 1.09173 0.88821 1.19063 0.92823 1.06422 0.91078 1.18040 0.93230 0.96098 0.92793 1.21119 0.92218 0.98783 0.96160 1.21014 0.99289 0.98660 0.95462 1.21068 0.96468 0.97797 0.99254 1.20927 0.94283 1.00580 0.99028 1.21147 0.99658 0.97437 0.94918 0.92729 0.95930 0.92482 0.91761 0.91273 0.91375 0.91345 0.92091 0.93161 0.75699 0.80575 0.81439 0.86145 0.86571 0.86791 0.86601 0.86479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.22 13.97 55.49 0.78 -25.45 16 2 C 0.03 0.87 5.45 -17.43 -0.09 0.78 16 3 Si 0.88 22.78 24.33 -169.99 -4.14 18.64 16 4 H -0.29 -7.09 6.68 56.52 0.38 -6.71 16 5 H -0.30 -8.06 7.11 56.52 0.40 -7.66 16 6 H -0.27 -7.28 6.76 56.52 0.38 -6.90 16 7 C -0.24 -6.06 8.87 -15.06 -0.13 -6.19 16 8 H 0.09 2.18 6.55 -52.49 -0.34 1.84 16 9 N -0.60 -13.45 2.87 -162.58 -0.47 -13.91 16 10 C 0.11 2.36 4.73 -2.53 -0.01 2.35 16 11 C -0.13 -2.09 7.09 -24.58 -0.17 -2.26 16 12 C -0.12 -1.88 6.48 -24.90 -0.16 -2.04 16 13 C 0.14 2.65 3.34 -66.96 -0.22 2.43 16 14 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 15 C 0.12 2.25 5.18 -4.04 -0.02 2.23 16 16 N -0.70 -13.74 4.80 -61.48 -0.30 -14.03 16 17 C 0.58 11.93 7.80 -12.65 -0.10 11.83 16 18 O -0.56 -12.67 13.99 5.24 0.07 -12.60 16 19 C -0.21 -3.72 6.29 -103.15 -0.65 -4.37 16 20 C 0.06 0.89 11.38 -16.88 -0.19 0.70 16 21 N -0.55 -6.49 5.88 -12.63 -0.07 -6.57 16 22 H 0.42 3.40 8.96 -40.82 -0.37 3.04 16 23 C -0.01 -0.14 11.80 -16.49 -0.19 -0.34 16 24 C -0.09 -1.42 5.79 -102.94 -0.60 -2.02 16 25 C 0.00 -0.02 5.42 -104.91 -0.57 -0.58 16 26 C -0.06 -1.06 7.92 -39.24 -0.31 -1.37 16 27 C -0.13 -1.81 10.03 -39.63 -0.40 -2.21 16 28 C -0.13 -1.68 10.04 -39.51 -0.40 -2.07 16 29 C -0.13 -1.72 10.03 -39.63 -0.40 -2.12 16 30 C -0.11 -1.66 9.72 -39.24 -0.38 -2.04 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.02 0.51 5.45 -51.93 -0.28 0.23 16 33 H 0.06 1.27 7.17 -51.93 -0.37 0.90 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.01 7.85 -51.93 -0.41 0.61 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 1.33 8.12 -51.93 -0.42 0.90 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.40 7.74 4.88 -40.82 -0.20 7.54 16 41 H 0.18 2.50 7.44 -52.49 -0.39 2.11 16 42 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 43 H 0.12 2.07 7.43 -52.49 -0.39 1.68 16 44 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 45 H 0.11 1.19 8.06 -52.49 -0.42 0.77 16 46 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 47 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 LS Contribution 376.91 15.07 5.68 5.68 Total: -1.00 -33.66 376.91 -10.03 -43.68 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -6.58 Total: 11.86 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -5.00 Total: -7.31 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: -0.06 Total: -59.96 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.07 Total: -12.60 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.14 Total: 18.64 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.66 -10.03 -43.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028320889.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.396 kcal (2) G-P(sol) polarization free energy of solvation -33.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds