Wall clock time and date at job start Tue Mar 31 2020 22:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99900 * 2 1 4 4 H 1.48495 * 109.47180 * 269.44570 * 3 2 1 5 5 H 1.48508 * 109.47084 * 29.44363 * 3 2 1 6 6 H 1.48492 * 109.47138 * 149.44182 * 3 2 1 7 7 C 1.38807 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00223 * 347.32371 * 7 2 1 9 9 N 1.36943 * 119.99867 * 167.32944 * 7 2 1 10 10 C 1.47427 * 125.64730 * 319.46318 * 9 7 2 11 11 C 1.54908 * 104.92852 * 155.83751 * 10 9 7 12 12 C 1.55444 * 101.45063 * 37.00558 * 11 10 9 13 13 C 1.47020 * 125.64922 * 139.48898 * 9 7 2 14 14 H 1.09000 * 109.88042 * 300.45146 * 13 9 7 15 15 C 1.52997 * 109.88182 * 61.61852 * 13 9 7 16 16 N 1.46497 * 109.47406 * 295.92351 * 15 13 9 17 17 C 1.34769 * 120.00002 * 173.02128 * 16 15 13 18 18 O 1.21714 * 120.00013 * 359.97438 * 17 16 15 19 19 C 1.46583 * 119.99830 * 180.02562 * 17 16 15 20 20 C 1.38063 * 126.00509 * 179.69138 * 19 17 16 21 21 C 1.39358 * 107.43716 * 179.84121 * 20 19 17 22 22 C 1.37817 * 107.66017 * 0.41348 * 21 20 19 23 23 C 1.47807 * 125.82560 * 179.75996 * 22 21 20 24 24 C 1.39600 * 120.14593 * 179.69926 * 23 22 21 25 25 C 1.37946 * 119.85114 * 179.76922 * 24 23 22 26 26 C 1.38361 * 120.14936 * 0.51324 * 25 24 23 27 27 C 1.38370 * 120.29399 * 359.73985 * 26 25 24 28 28 C 1.37950 * 120.14539 * 0.02562 * 27 26 25 29 29 N 1.36407 * 108.34945 * 359.74376 * 22 21 20 30 30 H 0.97001 * 125.72171 * 179.97438 * 29 22 21 31 31 H 0.97001 * 119.99896 * 0.02562 * 1 2 3 32 32 H 1.08994 * 110.36876 * 274.73379 * 10 9 7 33 33 H 1.09009 * 110.36676 * 36.94192 * 10 9 7 34 34 H 1.08998 * 111.00442 * 155.14186 * 11 10 9 35 35 H 1.08999 * 111.00482 * 278.98780 * 11 10 9 36 36 H 1.08998 * 110.70510 * 206.14299 * 12 11 10 37 37 H 1.09001 * 110.70854 * 82.88554 * 12 11 10 38 38 H 1.09002 * 109.46930 * 55.93002 * 15 13 9 39 39 H 1.09007 * 109.46843 * 175.91907 * 15 13 9 40 40 H 0.97001 * 119.99829 * 353.02202 * 16 15 13 41 41 H 1.07996 * 126.27815 * 359.95979 * 20 19 17 42 42 H 1.08008 * 126.16762 * 180.13532 * 21 20 19 43 43 H 1.08002 * 120.07131 * 0.03465 * 24 23 22 44 44 H 1.08000 * 119.92728 * 180.23957 * 25 24 23 45 45 H 1.07997 * 119.85393 * 179.76845 * 26 25 24 46 46 H 1.07992 * 119.92759 * 179.97438 * 27 26 25 47 47 H 1.08002 * 120.07461 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5094 2.0397 -1.4000 5 1 1.4417 2.6561 0.6883 6 1 3.5417 1.4437 0.7118 7 6 2.0102 -1.2021 -0.0005 8 1 1.4900 -2.1261 0.2043 9 7 3.3546 -1.2165 -0.2607 10 6 4.0406 -0.4055 -1.2831 11 6 5.5047 -0.2957 -0.7890 12 6 5.7302 -1.7062 -0.1760 13 6 4.3528 -2.0435 0.4330 14 1 4.3514 -1.8109 1.4979 15 6 4.0387 -3.5257 0.2205 16 7 2.7508 -3.8458 0.8409 17 6 2.2000 -5.0625 0.6608 18 8 2.7724 -5.8953 -0.0176 19 6 0.9110 -5.3826 1.2811 20 6 0.2344 -6.5813 1.1745 21 6 -0.9402 -6.4651 1.9153 22 6 -0.9702 -5.1976 2.4555 23 6 -2.0433 -4.6463 3.3095 24 6 -1.9490 -3.3426 3.7997 25 6 -2.9562 -2.8326 4.5924 26 6 -4.0531 -3.6136 4.9105 27 6 -4.1503 -4.9084 4.4323 28 6 -3.1524 -5.4290 3.6347 29 7 0.1595 -4.5387 2.0677 30 1 0.3939 -3.6281 2.3059 31 1 -0.4850 0.8401 -0.0004 32 1 4.0034 -0.9049 -2.2512 33 1 3.5874 0.5837 -1.3496 34 1 6.1854 -0.1157 -1.6211 35 1 5.6038 0.4806 -0.0304 36 1 6.4963 -1.6719 0.5985 37 1 5.9956 -2.4253 -0.9510 38 1 3.9902 -3.7374 -0.8476 39 1 4.8220 -4.1319 0.6757 40 1 2.2945 -3.1820 1.3813 41 1 0.5572 -7.4502 0.6204 42 1 -1.6936 -7.2291 2.0397 43 1 -1.0914 -2.7332 3.5554 44 1 -2.8864 -1.8228 4.9691 45 1 -4.8371 -3.2107 5.5345 46 1 -5.0088 -5.5129 4.6846 47 1 -3.2296 -6.4397 3.2617 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028348799.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:59 Heat of formation + Delta-G solvation = 56.809505 kcal Electronic energy + Delta-G solvation = -29080.839165 eV Core-core repulsion = 25229.534838 eV Total energy + Delta-G solvation = -3851.304326 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.11091 -39.14591 -38.55152 -37.71736 -34.11792 -32.76924 -32.00273 -31.42846 -30.53603 -30.07360 -29.61770 -27.83609 -25.12820 -24.09637 -23.02171 -22.66728 -21.31637 -20.68868 -20.10994 -19.88810 -19.45266 -18.49487 -17.08445 -16.45773 -16.29205 -15.67031 -15.30540 -15.00992 -14.79696 -14.64826 -14.20768 -14.02125 -13.79525 -13.52566 -13.35219 -13.23756 -13.08907 -12.67712 -12.55842 -12.49210 -12.32013 -12.28869 -12.04860 -11.42102 -11.35843 -11.30762 -11.01925 -10.99188 -10.79555 -10.58405 -10.26656 -9.94878 -9.69746 -9.61833 -9.42112 -8.98369 -8.84700 -8.73040 -8.49752 -7.48173 -6.88622 -6.14624 -3.67444 0.86631 1.38293 1.99424 2.94500 3.20376 3.20735 3.33724 3.38814 3.64410 3.82602 3.92602 4.37229 4.67228 4.83103 4.84871 4.92510 5.02218 5.08184 5.24444 5.28797 5.34696 5.37665 5.43497 5.46064 5.49603 5.59189 5.77935 5.84434 5.87558 5.98237 6.02804 6.05639 6.16635 6.19943 6.22243 6.26754 6.33190 6.42211 6.47843 6.48218 6.51934 6.77036 6.79068 6.89923 6.91692 6.97694 7.10272 7.52537 7.79991 8.02164 8.16697 8.61650 8.65929 9.48218 10.10764 10.98048 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010949 B = 0.003693 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.767757 B = 7580.179695 C = 9657.617466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.038 3.962 3 Si 0.897 3.103 4 H -0.285 1.285 5 H -0.304 1.304 6 H -0.268 1.268 7 C -0.261 4.261 8 H 0.084 0.916 9 N -0.601 5.601 10 C 0.114 3.886 11 C -0.136 4.136 12 C -0.121 4.121 13 C 0.142 3.858 14 H 0.047 0.953 15 C 0.117 3.883 16 N -0.707 5.707 17 C 0.583 3.417 18 O -0.547 6.547 19 C -0.029 4.029 20 C -0.116 4.116 21 C -0.188 4.188 22 C 0.079 3.921 23 C -0.015 4.015 24 C -0.113 4.113 25 C -0.111 4.111 26 C -0.124 4.124 27 C -0.118 4.118 28 C -0.102 4.102 29 N -0.521 5.521 30 H 0.421 0.579 31 H 0.266 0.734 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.406 0.594 41 H 0.148 0.852 42 H 0.143 0.857 43 H 0.122 0.878 44 H 0.125 0.875 45 H 0.121 0.879 46 H 0.124 0.876 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.290 -6.990 8.728 11.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.164 4.164 3 Si 0.729 3.271 4 H -0.213 1.213 5 H -0.232 1.232 6 H -0.193 1.193 7 C -0.389 4.389 8 H 0.102 0.898 9 N -0.328 5.328 10 C -0.011 4.011 11 C -0.174 4.174 12 C -0.159 4.159 13 C 0.035 3.965 14 H 0.065 0.935 15 C -0.008 4.008 16 N -0.359 5.359 17 C 0.370 3.630 18 O -0.426 6.426 19 C -0.145 4.145 20 C -0.142 4.142 21 C -0.212 4.212 22 C -0.039 4.039 23 C -0.016 4.016 24 C -0.132 4.132 25 C -0.129 4.129 26 C -0.143 4.143 27 C -0.136 4.136 28 C -0.121 4.121 29 N -0.116 5.116 30 H 0.260 0.740 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.244 0.756 41 H 0.165 0.835 42 H 0.161 0.839 43 H 0.140 0.860 44 H 0.143 0.857 45 H 0.139 0.861 46 H 0.142 0.858 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.011 -7.285 8.276 11.071 hybrid contribution 0.156 1.944 0.132 1.955 sum -0.855 -5.340 8.408 9.997 Atomic orbital electron populations 1.69775 1.05760 1.27051 1.51572 1.25553 0.95212 0.98259 0.97377 0.86626 0.79703 0.83497 0.77321 1.21320 1.23234 1.19333 1.18571 0.80437 0.93411 1.46444 0.89839 1.44635 1.03357 1.48298 1.36485 1.21945 0.90717 0.95592 0.92802 1.22825 0.97607 0.96879 1.00126 1.22532 0.96174 0.97184 1.00041 1.21306 0.89296 0.89600 0.96286 0.93479 1.21948 0.83544 0.97034 0.98317 1.46066 1.23349 1.13996 1.52441 1.17045 0.83134 0.82440 0.80415 1.90783 1.62709 1.48521 1.40549 1.20581 0.96169 0.92989 1.04712 1.21113 0.94648 0.96614 1.01798 1.20991 1.00205 0.95805 1.04228 1.19078 0.88859 0.93114 1.02818 1.18113 0.93089 0.93859 0.96557 1.21241 0.99635 0.94527 0.97770 1.21060 0.93872 0.99892 0.98037 1.21211 0.98157 0.94494 1.00396 1.21036 0.98688 0.95780 0.98072 1.21076 0.92970 0.99773 0.98304 1.42132 1.16613 1.14247 1.38604 0.73975 0.92443 0.95095 0.93964 0.91484 0.91622 0.91380 0.91178 0.91399 0.92676 0.75638 0.83455 0.83891 0.86020 0.85740 0.86114 0.85830 0.85419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.56 13.97 55.49 0.78 -24.78 16 2 C 0.04 1.01 5.48 -17.43 -0.10 0.92 16 3 Si 0.90 21.40 24.87 -169.99 -4.23 17.18 16 4 H -0.29 -6.80 6.69 56.52 0.38 -6.42 16 5 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.27 -6.20 7.07 56.52 0.40 -5.80 16 7 C -0.26 -6.61 9.39 -15.06 -0.14 -6.75 16 8 H 0.08 2.20 5.72 -52.49 -0.30 1.90 16 9 N -0.60 -13.24 2.62 -162.57 -0.43 -13.66 16 10 C 0.11 2.33 6.22 -2.53 -0.02 2.31 16 11 C -0.14 -2.20 7.11 -24.43 -0.17 -2.37 16 12 C -0.12 -1.79 6.48 -24.74 -0.16 -1.95 16 13 C 0.14 2.56 3.31 -66.95 -0.22 2.34 16 14 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 15 C 0.12 2.10 5.16 -4.05 -0.02 2.08 16 16 N -0.71 -13.15 4.28 -61.65 -0.26 -13.42 16 17 C 0.58 11.35 7.78 -12.90 -0.10 11.25 16 18 O -0.55 -11.93 16.85 5.18 0.09 -11.85 16 19 C -0.03 -0.52 7.04 -81.94 -0.58 -1.10 16 20 C -0.12 -1.85 10.60 -39.23 -0.42 -2.27 16 21 C -0.19 -2.67 10.22 -39.32 -0.40 -3.07 16 22 C 0.08 1.18 6.93 -82.07 -0.57 0.61 16 23 C -0.02 -0.21 5.87 -104.97 -0.62 -0.83 16 24 C -0.11 -1.54 9.70 -39.18 -0.38 -1.92 16 25 C -0.11 -1.32 10.03 -39.64 -0.40 -1.72 16 26 C -0.12 -1.30 10.04 -39.49 -0.40 -1.70 16 27 C -0.12 -1.20 10.03 -39.64 -0.40 -1.60 16 28 C -0.10 -1.18 9.56 -39.18 -0.37 -1.55 16 29 N -0.52 -8.36 5.90 -5.81 -0.03 -8.39 16 30 H 0.42 6.53 7.24 -40.82 -0.30 6.24 16 31 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.04 0.94 3.26 -51.92 -0.17 0.77 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 1.08 8.12 -51.93 -0.42 0.66 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.97 7.85 -51.93 -0.41 0.56 16 38 H 0.07 1.34 8.11 -51.93 -0.42 0.92 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.41 7.53 5.54 -40.82 -0.23 7.30 16 41 H 0.15 2.19 8.06 -52.49 -0.42 1.77 16 42 H 0.14 1.60 7.26 -52.48 -0.38 1.22 16 43 H 0.12 1.67 7.14 -52.49 -0.37 1.30 16 44 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 45 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 46 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 47 H 0.13 1.22 6.98 -52.49 -0.37 0.85 16 LS Contribution 378.80 15.07 5.71 5.71 Total: -1.00 -31.26 378.80 -10.17 -41.42 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -6.33 Total: 15.12 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -5.46 Total: -7.32 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: 0.05 Total: -60.26 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.23 Total: 17.18 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.26 -10.17 -41.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028348799.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.233 kcal (2) G-P(sol) polarization free energy of solvation -31.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds