Wall clock time and date at job start Tue Mar 31 2020 22:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99900 * 2 1 4 4 H 1.48495 * 109.47180 * 269.44570 * 3 2 1 5 5 H 1.48508 * 109.47084 * 29.44363 * 3 2 1 6 6 H 1.48492 * 109.47138 * 149.44182 * 3 2 1 7 7 C 1.38807 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00223 * 347.32371 * 7 2 1 9 9 N 1.36943 * 119.99867 * 167.32944 * 7 2 1 10 10 C 1.47427 * 125.64730 * 319.46318 * 9 7 2 11 11 C 1.54908 * 104.92852 * 155.83751 * 10 9 7 12 12 C 1.55444 * 101.45063 * 37.00558 * 11 10 9 13 13 C 1.47020 * 125.64922 * 139.48898 * 9 7 2 14 14 H 1.09000 * 109.88042 * 300.45146 * 13 9 7 15 15 C 1.52997 * 109.88182 * 61.61852 * 13 9 7 16 16 N 1.46497 * 109.47406 * 295.92351 * 15 13 9 17 17 C 1.34769 * 120.00002 * 173.02128 * 16 15 13 18 18 O 1.21714 * 120.00013 * 359.97438 * 17 16 15 19 19 C 1.46583 * 119.99830 * 180.02562 * 17 16 15 20 20 C 1.38063 * 126.00509 * 179.69138 * 19 17 16 21 21 C 1.39358 * 107.43716 * 179.84121 * 20 19 17 22 22 C 1.37817 * 107.66017 * 0.41348 * 21 20 19 23 23 C 1.47807 * 125.82560 * 179.75996 * 22 21 20 24 24 C 1.39600 * 120.14593 * 179.69926 * 23 22 21 25 25 C 1.37946 * 119.85114 * 179.76922 * 24 23 22 26 26 C 1.38361 * 120.14936 * 0.51324 * 25 24 23 27 27 C 1.38370 * 120.29399 * 359.73985 * 26 25 24 28 28 C 1.37950 * 120.14539 * 0.02562 * 27 26 25 29 29 N 1.36407 * 108.34945 * 359.74376 * 22 21 20 30 30 H 0.97001 * 125.72171 * 179.97438 * 29 22 21 31 31 H 0.97001 * 119.99896 * 0.02562 * 1 2 3 32 32 H 1.08994 * 110.36876 * 274.73379 * 10 9 7 33 33 H 1.09009 * 110.36676 * 36.94192 * 10 9 7 34 34 H 1.08998 * 111.00442 * 155.14186 * 11 10 9 35 35 H 1.08999 * 111.00482 * 278.98780 * 11 10 9 36 36 H 1.08998 * 110.70510 * 206.14299 * 12 11 10 37 37 H 1.09001 * 110.70854 * 82.88554 * 12 11 10 38 38 H 1.09002 * 109.46930 * 55.93002 * 15 13 9 39 39 H 1.09007 * 109.46843 * 175.91907 * 15 13 9 40 40 H 0.97001 * 119.99829 * 353.02202 * 16 15 13 41 41 H 1.07996 * 126.27815 * 359.95979 * 20 19 17 42 42 H 1.08008 * 126.16762 * 180.13532 * 21 20 19 43 43 H 1.08002 * 120.07131 * 0.03465 * 24 23 22 44 44 H 1.08000 * 119.92728 * 180.23957 * 25 24 23 45 45 H 1.07997 * 119.85393 * 179.76845 * 26 25 24 46 46 H 1.07992 * 119.92759 * 179.97438 * 27 26 25 47 47 H 1.08002 * 120.07461 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5094 2.0397 -1.4000 5 1 1.4417 2.6561 0.6883 6 1 3.5417 1.4437 0.7118 7 6 2.0102 -1.2021 -0.0005 8 1 1.4900 -2.1261 0.2043 9 7 3.3546 -1.2165 -0.2607 10 6 4.0406 -0.4055 -1.2831 11 6 5.5047 -0.2957 -0.7890 12 6 5.7302 -1.7062 -0.1760 13 6 4.3528 -2.0435 0.4330 14 1 4.3514 -1.8109 1.4979 15 6 4.0387 -3.5257 0.2205 16 7 2.7508 -3.8458 0.8409 17 6 2.2000 -5.0625 0.6608 18 8 2.7724 -5.8953 -0.0176 19 6 0.9110 -5.3826 1.2811 20 6 0.2344 -6.5813 1.1745 21 6 -0.9402 -6.4651 1.9153 22 6 -0.9702 -5.1976 2.4555 23 6 -2.0433 -4.6463 3.3095 24 6 -1.9490 -3.3426 3.7997 25 6 -2.9562 -2.8326 4.5924 26 6 -4.0531 -3.6136 4.9105 27 6 -4.1503 -4.9084 4.4323 28 6 -3.1524 -5.4290 3.6347 29 7 0.1595 -4.5387 2.0677 30 1 0.3939 -3.6281 2.3059 31 1 -0.4850 0.8401 -0.0004 32 1 4.0034 -0.9049 -2.2512 33 1 3.5874 0.5837 -1.3496 34 1 6.1854 -0.1157 -1.6211 35 1 5.6038 0.4806 -0.0304 36 1 6.4963 -1.6719 0.5985 37 1 5.9956 -2.4253 -0.9510 38 1 3.9902 -3.7374 -0.8476 39 1 4.8220 -4.1319 0.6757 40 1 2.2945 -3.1820 1.3813 41 1 0.5572 -7.4502 0.6204 42 1 -1.6936 -7.2291 2.0397 43 1 -1.0914 -2.7332 3.5554 44 1 -2.8864 -1.8228 4.9691 45 1 -4.8371 -3.2107 5.5345 46 1 -5.0088 -5.5129 4.6846 47 1 -3.2296 -6.4397 3.2617 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028348799.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:58 Heat of formation + Delta-G solvation = 38.542156 kcal Electronic energy + Delta-G solvation = -29081.631296 eV Core-core repulsion = 25229.534838 eV Total energy + Delta-G solvation = -3852.096458 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.34708 -40.52515 -39.64772 -39.19555 -35.64202 -34.67645 -33.03091 -32.52100 -31.80500 -31.58459 -31.02004 -29.05384 -26.66187 -25.73366 -24.24040 -23.62531 -22.64591 -21.98627 -21.44845 -21.31148 -20.71066 -19.92366 -18.64884 -17.95363 -17.69293 -16.95725 -16.64565 -16.51436 -16.12241 -15.76198 -15.47709 -15.38370 -15.06623 -14.93078 -14.84170 -14.51418 -14.27125 -14.23300 -13.90348 -13.68650 -13.62648 -13.53469 -13.41593 -13.07102 -12.99955 -12.65515 -12.30957 -12.22684 -12.11016 -11.90470 -11.79424 -11.55484 -11.42190 -11.16847 -10.71364 -10.46001 -10.09874 -10.02325 -9.88432 -8.72635 -8.63662 -8.19437 -5.69092 -0.19075 0.48188 0.74147 1.28515 1.36965 1.48384 1.81769 1.97276 2.20339 2.38777 2.40199 2.97820 3.03678 3.30589 3.60821 3.82507 3.88351 3.93338 3.96394 4.06290 4.10986 4.26655 4.27350 4.30503 4.40929 4.44377 4.55682 4.60933 4.63787 4.71384 4.82641 4.86960 4.96340 4.98272 5.05452 5.11536 5.11952 5.13484 5.27682 5.38613 5.45032 5.47945 5.52353 5.59698 5.81169 5.87265 5.89571 6.04723 6.16164 6.27739 6.51924 6.78924 7.11311 7.50018 8.19504 8.95705 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010949 B = 0.003693 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.767757 B = 7580.179695 C = 9657.617466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.016 4.016 3 Si 0.952 3.048 4 H -0.287 1.287 5 H -0.314 1.314 6 H -0.253 1.253 7 C -0.244 4.244 8 H 0.065 0.935 9 N -0.618 5.618 10 C 0.101 3.899 11 C -0.125 4.125 12 C -0.110 4.110 13 C 0.139 3.861 14 H 0.050 0.950 15 C 0.120 3.880 16 N -0.707 5.707 17 C 0.579 3.421 18 O -0.578 6.578 19 C -0.068 4.068 20 C -0.114 4.114 21 C -0.187 4.187 22 C 0.082 3.918 23 C -0.042 4.042 24 C -0.136 4.136 25 C -0.125 4.125 26 C -0.119 4.119 27 C -0.115 4.115 28 C -0.101 4.101 29 N -0.525 5.525 30 H 0.418 0.582 31 H 0.261 0.739 32 H 0.027 0.973 33 H 0.024 0.976 34 H 0.099 0.901 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.046 0.954 39 H 0.078 0.922 40 H 0.404 0.596 41 H 0.156 0.844 42 H 0.178 0.822 43 H 0.105 0.895 44 H 0.134 0.866 45 H 0.151 0.849 46 H 0.159 0.841 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.970 -7.623 9.949 12.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.214 4.214 3 Si 0.783 3.217 4 H -0.215 1.215 5 H -0.244 1.244 6 H -0.177 1.177 7 C -0.373 4.373 8 H 0.082 0.918 9 N -0.344 5.344 10 C -0.023 4.023 11 C -0.163 4.163 12 C -0.148 4.148 13 C 0.033 3.967 14 H 0.068 0.932 15 C -0.005 4.005 16 N -0.358 5.358 17 C 0.368 3.632 18 O -0.460 6.460 19 C -0.182 4.182 20 C -0.141 4.141 21 C -0.210 4.210 22 C -0.036 4.036 23 C -0.043 4.043 24 C -0.155 4.155 25 C -0.143 4.143 26 C -0.137 4.137 27 C -0.132 4.132 28 C -0.120 4.120 29 N -0.120 5.120 30 H 0.256 0.744 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.042 0.958 34 H 0.117 0.883 35 H 0.084 0.916 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.065 0.935 39 H 0.096 0.904 40 H 0.242 0.758 41 H 0.173 0.827 42 H 0.196 0.804 43 H 0.123 0.877 44 H 0.152 0.848 45 H 0.168 0.832 46 H 0.177 0.823 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.636 -7.919 9.499 12.384 hybrid contribution -0.057 2.065 -0.200 2.076 sum -0.693 -5.854 9.299 11.011 Atomic orbital electron populations 1.69902 1.07196 1.27257 1.54559 1.26120 0.95708 1.01130 0.98398 0.85729 0.78931 0.79963 0.77065 1.21463 1.24355 1.17710 1.18611 0.82238 0.92609 1.43848 0.91765 1.44807 1.02933 1.49004 1.37687 1.22110 0.93536 0.94115 0.92552 1.22798 0.94740 0.97598 1.01201 1.22567 0.94566 0.96531 1.01159 1.21519 0.90292 0.88549 0.96372 0.93183 1.21960 0.83853 0.97513 0.97164 1.46116 1.23664 1.13773 1.52230 1.17322 0.83657 0.82207 0.80010 1.90739 1.63803 1.49307 1.42140 1.20482 0.96441 0.94259 1.06968 1.21390 0.95029 0.96192 1.01494 1.21362 1.00201 0.96150 1.03292 1.19591 0.88468 0.93387 1.02125 1.18252 0.93925 0.94389 0.97704 1.21296 1.00081 0.94934 0.99150 1.21292 0.94152 1.00799 0.98036 1.21622 0.97866 0.94497 0.99665 1.21481 0.99125 0.95897 0.96727 1.21417 0.92163 1.00509 0.97916 1.42154 1.17055 1.14098 1.38701 0.74363 0.92954 0.95490 0.95833 0.88254 0.91606 0.88021 0.89842 0.93526 0.90402 0.75836 0.82666 0.80433 0.87730 0.84809 0.83158 0.82321 0.83183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.01 13.97 21.65 0.30 -55.71 16 2 C -0.02 -0.90 5.48 84.86 0.46 -0.44 16 3 Si 0.95 45.04 24.87 68.60 1.71 46.75 16 4 H -0.29 -13.45 6.69 99.48 0.67 -12.79 16 5 H -0.31 -15.23 7.11 99.48 0.71 -14.52 16 6 H -0.25 -11.15 7.07 99.48 0.70 -10.44 16 7 C -0.24 -12.73 9.39 84.03 0.79 -11.94 16 8 H 0.07 3.56 5.72 -2.91 -0.02 3.55 16 9 N -0.62 -27.10 2.62 -668.26 -1.75 -28.85 16 10 C 0.10 4.01 6.22 86.85 0.54 4.55 16 11 C -0.13 -3.63 7.11 32.09 0.23 -3.40 16 12 C -0.11 -2.88 6.48 31.88 0.21 -2.67 16 13 C 0.14 4.83 3.31 45.34 0.15 4.98 16 14 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 15 C 0.12 4.29 5.16 86.38 0.45 4.73 16 16 N -0.71 -27.33 4.28 -467.17 -2.00 -29.33 16 17 C 0.58 23.58 7.78 86.42 0.67 24.25 16 18 O -0.58 -26.10 16.85 -4.39 -0.07 -26.18 16 19 C -0.07 -2.49 7.04 40.36 0.28 -2.20 16 20 C -0.11 -3.71 10.60 22.50 0.24 -3.47 16 21 C -0.19 -5.15 10.22 22.44 0.23 -4.92 16 22 C 0.08 2.49 6.93 40.87 0.28 2.78 16 23 C -0.04 -1.14 5.87 -20.09 -0.12 -1.26 16 24 C -0.14 -3.84 9.70 22.53 0.22 -3.62 16 25 C -0.12 -2.92 10.03 22.23 0.22 -2.70 16 26 C -0.12 -2.18 10.04 22.33 0.22 -1.95 16 27 C -0.11 -1.96 10.03 22.23 0.22 -1.74 16 28 C -0.10 -2.11 9.56 22.53 0.22 -1.89 16 29 N -0.53 -17.84 5.90 -172.30 -1.02 -18.86 16 30 H 0.42 14.23 7.24 -92.71 -0.67 13.56 16 31 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 32 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.02 1.03 3.26 -2.38 -0.01 1.03 16 34 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.07 1.93 8.12 -2.39 -0.02 1.91 16 36 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.08 2.00 7.85 -2.39 -0.02 1.99 16 38 H 0.05 1.86 8.11 -2.39 -0.02 1.84 16 39 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 40 H 0.40 15.83 5.54 -92.71 -0.51 15.32 16 41 H 0.16 4.65 8.06 -2.91 -0.02 4.62 16 42 H 0.18 3.49 7.26 -2.91 -0.02 3.47 16 43 H 0.10 3.18 7.14 -2.91 -0.02 3.16 16 44 H 0.13 2.74 8.06 -2.91 -0.02 2.72 16 45 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 46 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 47 H 0.15 2.35 6.98 -2.91 -0.02 2.33 16 Total: -1.00 -70.72 378.80 2.47 -68.25 By element: Atomic # 1 Polarization: 45.03 SS G_CDS: -0.21 Total: 44.82 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 5.52 Total: -0.90 kcal Atomic # 7 Polarization: -128.28 SS G_CDS: -4.46 Total: -132.74 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.07 Total: -26.18 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.71 Total: 46.75 kcal Total: -70.72 2.47 -68.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028348799.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.793 kcal (2) G-P(sol) polarization free energy of solvation -70.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds