Wall clock time and date at job start Tue Mar 31 2020 23:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39040 * 121.01683 * 2 1 4 4 C 1.47753 * 120.27002 * 359.97438 * 3 2 1 5 5 O 1.21562 * 120.00442 * 353.65830 * 4 3 2 6 6 N 1.34783 * 119.99946 * 173.65965 * 4 3 2 7 7 C 1.46500 * 120.00129 * 179.97438 * 6 4 3 8 8 C 1.52998 * 109.47354 * 179.97438 * 7 6 4 9 9 H 1.08998 * 110.64047 * 305.70578 * 8 7 6 10 10 C 1.55148 * 110.72136 * 182.55891 * 8 7 6 11 11 C 1.54907 * 101.58451 * 206.13710 * 10 8 7 12 12 N 1.47429 * 104.83247 * 37.00519 * 11 10 8 13 13 C 1.36933 * 125.64704 * 155.90175 * 12 11 10 14 14 H 1.07998 * 120.00024 * 179.97438 * 13 12 11 15 15 C 1.38816 * 120.00445 * 359.97438 * 13 12 11 16 16 N 1.31624 * 119.99585 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00275 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47055 * 90.00216 * 17 15 13 19 19 H 1.48497 * 109.47109 * 209.99855 * 17 15 13 20 20 H 1.48495 * 109.47327 * 330.00180 * 17 15 13 21 21 C 1.47310 * 108.73588 * 335.72305 * 12 11 10 22 22 C 1.40569 * 119.45816 * 179.72333 * 3 2 1 23 23 N 1.30823 * 121.54405 * 0.26662 * 22 3 2 24 24 C 1.33793 * 121.71771 * 359.97438 * 23 22 3 25 25 C 1.40521 * 120.82815 * 180.02562 * 24 23 22 26 26 C 1.36137 * 119.81904 * 179.97438 * 25 24 23 27 27 C 1.39347 * 121.09004 * 359.97438 * 26 25 24 28 28 C 1.36143 * 120.83714 * 0.03506 * 27 26 25 29 29 C 1.40498 * 121.01462 * 180.20987 * 2 1 3 30 30 H 1.09004 * 109.46787 * 83.65461 * 1 2 3 31 31 H 1.09000 * 109.47377 * 203.65041 * 1 2 3 32 32 H 1.08997 * 109.46919 * 323.65902 * 1 2 3 33 33 H 0.97001 * 119.99715 * 0.02562 * 6 4 3 34 34 H 1.09004 * 109.47186 * 299.99896 * 7 6 4 35 35 H 1.09005 * 109.47040 * 59.99713 * 7 6 4 36 36 H 1.09004 * 111.00606 * 324.21118 * 10 8 7 37 37 H 1.09000 * 111.00828 * 88.02163 * 10 8 7 38 38 H 1.09002 * 110.37178 * 155.85103 * 11 10 8 39 39 H 1.09007 * 110.36627 * 278.06337 * 11 10 8 40 40 H 0.96994 * 120.00120 * 179.97438 * 16 15 13 41 41 H 1.09002 * 110.06595 * 241.86559 * 21 12 11 42 42 H 1.09001 * 109.85166 * 120.60790 * 21 12 11 43 43 H 1.08002 * 119.22341 * 180.25270 * 22 3 2 44 44 H 1.08002 * 120.09330 * 0.02562 * 25 24 23 45 45 H 1.07997 * 119.45400 * 179.97438 * 26 25 24 46 46 H 1.07997 * 119.57903 * 180.02562 * 27 26 25 47 47 H 1.07995 * 120.18905 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2235 1.1916 0.0000 4 6 1.5137 2.4874 -0.0006 5 8 0.3040 2.5179 -0.1173 6 7 2.2073 3.6359 0.1283 7 6 1.5036 4.9208 0.1272 8 6 2.5158 6.0568 0.2874 9 1 3.1314 5.9009 1.1733 10 6 1.7949 7.4290 0.3544 11 6 2.8967 8.3851 -0.1667 12 7 3.5871 7.6245 -1.2243 13 6 4.2925 8.1658 -2.2656 14 1 4.7645 7.5204 -2.9916 15 6 4.4012 9.5443 -2.3882 16 7 3.8256 10.3310 -1.5037 17 14 5.3642 10.2827 -3.8083 18 1 4.4553 10.5010 -4.9621 19 1 5.9500 11.5807 -3.3872 20 1 6.4527 9.3536 -4.2044 21 6 3.3963 6.1855 -0.9735 22 6 3.6287 1.1534 0.0059 23 7 4.2825 0.0203 0.0062 24 6 3.6483 -1.1578 0.0015 25 6 4.3694 -2.3639 0.0025 26 6 3.7031 -3.5510 -0.0019 27 6 2.3103 -3.5944 -0.0068 28 6 1.5763 -2.4477 -0.0081 29 6 2.2310 -1.2041 -0.0044 30 1 -0.3633 0.1136 -1.0214 31 1 -0.3634 -0.9413 0.4122 32 1 -0.3633 0.8278 0.6090 33 1 3.1726 3.6116 0.2211 34 1 0.9681 5.0409 -0.8146 35 1 0.7942 4.9473 0.9545 36 1 0.9229 7.4446 -0.2994 37 1 1.5165 7.6745 1.3793 38 1 2.4500 9.2895 -0.5798 39 1 3.5903 8.6376 0.6354 40 1 3.9018 11.2942 -1.5891 41 1 4.3596 5.7045 -0.8037 42 1 2.8946 5.7248 -1.8246 43 1 4.1814 2.0812 0.0100 44 1 5.4493 -2.3491 0.0076 45 1 4.2632 -4.4744 -0.0015 46 1 1.8067 -4.5498 -0.0098 47 1 0.4974 -2.4936 -0.0116 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028694396.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:05 Heat of formation + Delta-G solvation = 44.067138 kcal Electronic energy + Delta-G solvation = -28189.170733 eV Core-core repulsion = 24337.313856 eV Total energy + Delta-G solvation = -3851.856877 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.41347 -39.66863 -37.75082 -37.17196 -35.18184 -34.44419 -32.64338 -31.22065 -30.67785 -29.76273 -28.56819 -27.85106 -25.70015 -24.58881 -24.24987 -23.25699 -21.46215 -21.08690 -20.12197 -19.75292 -18.49851 -18.08955 -17.28891 -16.82853 -16.03950 -15.85141 -15.61726 -15.04809 -14.74075 -14.68856 -14.61916 -14.32821 -14.20830 -13.74244 -13.56409 -13.25922 -13.07285 -12.80341 -12.52564 -12.37913 -12.14985 -12.10843 -11.86920 -11.77014 -11.71479 -11.51003 -10.96348 -10.80339 -10.50044 -10.43248 -10.19836 -10.09984 -10.01382 -9.83227 -9.61139 -9.47007 -9.22745 -9.00405 -8.65703 -8.56125 -6.84458 -5.66113 -3.07774 -0.09194 0.28290 1.52026 2.27207 3.04547 3.06869 3.39902 3.44914 3.46782 3.76280 3.87191 4.13911 4.31659 4.35669 4.45433 4.48335 4.61560 4.72600 4.85401 5.03495 5.08597 5.11763 5.22841 5.33722 5.38174 5.44321 5.50754 5.53978 5.61835 5.66276 5.68547 5.83917 5.86491 5.98668 6.02140 6.07378 6.11428 6.17148 6.32569 6.38776 6.42430 6.53304 6.56600 6.69716 6.88449 7.42558 7.50255 7.54249 7.61812 7.84762 8.10613 8.35611 9.21467 9.82160 10.46834 11.37867 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019004 B = 0.002148 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.028413 B =13034.426529 C =14000.880303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.048 3.952 3 C -0.203 4.203 4 C 0.562 3.438 5 O -0.534 6.534 6 N -0.718 5.718 7 C 0.133 3.867 8 C -0.116 4.116 9 H 0.077 0.923 10 C -0.135 4.135 11 C 0.152 3.848 12 N -0.604 5.604 13 C -0.222 4.222 14 H 0.077 0.923 15 C -0.012 4.012 16 N -0.922 5.922 17 Si 0.915 3.085 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.282 1.282 21 C 0.140 3.860 22 C 0.169 3.831 23 N -0.481 5.481 24 C 0.145 3.855 25 C -0.099 4.099 26 C -0.092 4.092 27 C -0.123 4.123 28 C -0.086 4.086 29 C -0.115 4.115 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.400 0.600 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.107 0.893 39 H 0.012 0.988 40 H 0.252 0.748 41 H 0.019 0.981 42 H 0.025 0.975 43 H 0.163 0.837 44 H 0.138 0.862 45 H 0.131 0.869 46 H 0.129 0.871 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.784 -26.705 6.577 27.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.039 3.961 3 C -0.208 4.208 4 C 0.349 3.651 5 O -0.413 6.413 6 N -0.369 5.369 7 C 0.010 3.990 8 C -0.135 4.135 9 H 0.095 0.905 10 C -0.174 4.174 11 C 0.027 3.973 12 N -0.331 5.331 13 C -0.351 4.351 14 H 0.095 0.905 15 C -0.208 4.208 16 N -0.571 5.571 17 Si 0.745 3.255 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.207 1.207 21 C 0.014 3.986 22 C -0.005 4.005 23 N -0.189 5.189 24 C 0.024 3.976 25 C -0.117 4.117 26 C -0.112 4.112 27 C -0.141 4.141 28 C -0.105 4.105 29 C -0.117 4.117 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.124 0.876 33 H 0.236 0.764 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.125 0.875 39 H 0.030 0.970 40 H 0.063 0.937 41 H 0.037 0.963 42 H 0.043 0.957 43 H 0.180 0.820 44 H 0.156 0.844 45 H 0.149 0.851 46 H 0.147 0.853 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.647 -26.552 6.410 27.707 hybrid contribution 0.339 0.417 -0.677 0.864 sum -4.308 -26.135 5.733 27.101 Atomic orbital electron populations 1.21196 0.88683 1.03820 1.04580 1.20677 0.97307 0.90495 0.87586 1.20820 0.95156 0.94320 1.10504 1.17907 0.86911 0.83371 0.76899 1.90725 1.13520 1.87106 1.49939 1.46018 1.11134 1.06111 1.73629 1.21513 0.94727 0.80392 1.02362 1.22460 0.96900 0.94703 0.99433 0.90510 1.23001 0.99729 0.94415 1.00239 1.21934 0.90491 0.95207 0.89687 1.44569 1.61165 0.99016 1.28306 1.19078 1.24457 0.90191 1.01349 0.90532 1.24793 1.01072 0.95941 0.98947 1.69793 1.48298 1.03013 1.36014 0.86067 0.79354 0.78543 0.81510 1.21587 1.21653 1.20749 1.21402 0.95526 0.88071 0.93636 1.23077 0.90154 0.96683 0.90606 1.67969 1.39460 0.97455 1.13986 1.19025 0.89597 0.92656 0.96334 1.20851 1.00640 0.90071 1.00174 1.20999 0.94532 0.98069 0.97617 1.20950 0.94124 0.98595 1.00471 1.21118 1.00370 0.91004 0.97978 1.18728 0.94011 0.94078 1.04859 0.89371 0.91594 0.87648 0.76426 0.90942 0.91383 0.91809 0.92093 0.87503 0.97005 0.93727 0.96310 0.95688 0.81979 0.84426 0.85091 0.85289 0.84729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 8.48 36.01 0.31 -0.92 16 2 C 0.05 0.53 5.99 -103.47 -0.62 -0.09 16 3 C -0.20 -2.41 5.89 -104.83 -0.62 -3.03 16 4 C 0.56 7.46 7.71 -12.37 -0.10 7.37 16 5 O -0.53 -8.29 13.45 5.31 0.07 -8.22 16 6 N -0.72 -8.91 5.38 -61.28 -0.33 -9.24 16 7 C 0.13 1.87 5.00 -4.04 -0.02 1.85 16 8 C -0.12 -1.85 2.98 -88.79 -0.26 -2.12 16 9 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 10 C -0.13 -2.43 6.53 -24.59 -0.16 -2.59 16 11 C 0.15 3.61 5.89 -2.53 -0.01 3.59 16 12 N -0.60 -15.27 3.40 -169.83 -0.58 -15.85 16 13 C -0.22 -6.18 10.28 -15.06 -0.15 -6.34 16 14 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 15 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 16 N -0.92 -26.79 10.09 55.49 0.56 -26.23 16 17 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 21 C 0.14 2.77 6.66 -2.90 -0.02 2.76 16 22 C 0.17 1.90 10.67 -17.10 -0.18 1.71 16 23 N -0.48 -5.89 10.30 -10.67 -0.11 -6.00 16 24 C 0.14 1.64 6.61 -84.79 -0.56 1.08 16 25 C -0.10 -0.88 9.97 -39.48 -0.39 -1.27 16 26 C -0.09 -0.62 9.94 -39.92 -0.40 -1.02 16 27 C -0.12 -0.80 9.96 -39.92 -0.40 -1.19 16 28 C -0.09 -0.68 9.32 -39.47 -0.37 -1.04 16 29 C -0.11 -1.21 5.74 -106.81 -0.61 -1.82 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.46 6.22 -51.93 -0.32 0.14 16 32 H 0.11 1.19 5.94 -51.93 -0.31 0.89 16 33 H 0.40 4.22 6.46 -40.82 -0.26 3.96 16 34 H 0.07 1.13 8.01 -51.93 -0.42 0.71 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 1.15 8.05 -51.93 -0.42 0.73 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.11 2.88 5.87 -51.93 -0.30 2.58 16 39 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.03 0.51 7.73 -51.93 -0.40 0.11 16 43 H 0.16 1.45 6.42 -52.49 -0.34 1.11 16 44 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 45 H 0.13 0.52 8.06 -52.49 -0.42 0.09 16 46 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 47 H 0.13 0.77 6.31 -52.49 -0.33 0.44 16 LS Contribution 376.77 15.07 5.68 5.68 Total: -1.00 -33.02 376.77 -10.85 -43.88 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -6.45 Total: 2.42 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -4.67 Total: -3.50 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: -0.46 Total: -57.31 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.07 Total: -8.22 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.02 -10.85 -43.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028694396.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.944 kcal (2) G-P(sol) polarization free energy of solvation -33.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds