Wall clock time and date at job start Tue Mar 31 2020 23:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39040 * 121.01683 * 2 1 4 4 C 1.47753 * 120.27002 * 359.97438 * 3 2 1 5 5 O 1.21562 * 120.00442 * 353.65830 * 4 3 2 6 6 N 1.34783 * 119.99946 * 173.65965 * 4 3 2 7 7 C 1.46500 * 120.00129 * 179.97438 * 6 4 3 8 8 C 1.52998 * 109.47354 * 179.97438 * 7 6 4 9 9 H 1.08998 * 110.64047 * 305.70578 * 8 7 6 10 10 C 1.55148 * 110.72136 * 182.55891 * 8 7 6 11 11 C 1.54907 * 101.58451 * 206.13710 * 10 8 7 12 12 N 1.47429 * 104.83247 * 37.00519 * 11 10 8 13 13 C 1.36933 * 125.64704 * 155.90175 * 12 11 10 14 14 H 1.07998 * 120.00024 * 179.97438 * 13 12 11 15 15 C 1.38816 * 120.00445 * 359.97438 * 13 12 11 16 16 N 1.31624 * 119.99585 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00275 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47055 * 90.00216 * 17 15 13 19 19 H 1.48497 * 109.47109 * 209.99855 * 17 15 13 20 20 H 1.48495 * 109.47327 * 330.00180 * 17 15 13 21 21 C 1.47310 * 108.73588 * 335.72305 * 12 11 10 22 22 C 1.40569 * 119.45816 * 179.72333 * 3 2 1 23 23 N 1.30823 * 121.54405 * 0.26662 * 22 3 2 24 24 C 1.33793 * 121.71771 * 359.97438 * 23 22 3 25 25 C 1.40521 * 120.82815 * 180.02562 * 24 23 22 26 26 C 1.36137 * 119.81904 * 179.97438 * 25 24 23 27 27 C 1.39347 * 121.09004 * 359.97438 * 26 25 24 28 28 C 1.36143 * 120.83714 * 0.03506 * 27 26 25 29 29 C 1.40498 * 121.01462 * 180.20987 * 2 1 3 30 30 H 1.09004 * 109.46787 * 83.65461 * 1 2 3 31 31 H 1.09000 * 109.47377 * 203.65041 * 1 2 3 32 32 H 1.08997 * 109.46919 * 323.65902 * 1 2 3 33 33 H 0.97001 * 119.99715 * 0.02562 * 6 4 3 34 34 H 1.09004 * 109.47186 * 299.99896 * 7 6 4 35 35 H 1.09005 * 109.47040 * 59.99713 * 7 6 4 36 36 H 1.09004 * 111.00606 * 324.21118 * 10 8 7 37 37 H 1.09000 * 111.00828 * 88.02163 * 10 8 7 38 38 H 1.09002 * 110.37178 * 155.85103 * 11 10 8 39 39 H 1.09007 * 110.36627 * 278.06337 * 11 10 8 40 40 H 0.96994 * 120.00120 * 179.97438 * 16 15 13 41 41 H 1.09002 * 110.06595 * 241.86559 * 21 12 11 42 42 H 1.09001 * 109.85166 * 120.60790 * 21 12 11 43 43 H 1.08002 * 119.22341 * 180.25270 * 22 3 2 44 44 H 1.08002 * 120.09330 * 0.02562 * 25 24 23 45 45 H 1.07997 * 119.45400 * 179.97438 * 26 25 24 46 46 H 1.07997 * 119.57903 * 180.02562 * 27 26 25 47 47 H 1.07995 * 120.18905 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2235 1.1916 0.0000 4 6 1.5137 2.4874 -0.0006 5 8 0.3040 2.5179 -0.1173 6 7 2.2073 3.6359 0.1283 7 6 1.5036 4.9208 0.1272 8 6 2.5158 6.0568 0.2874 9 1 3.1314 5.9009 1.1733 10 6 1.7949 7.4290 0.3544 11 6 2.8967 8.3851 -0.1667 12 7 3.5871 7.6245 -1.2243 13 6 4.2925 8.1658 -2.2656 14 1 4.7645 7.5204 -2.9916 15 6 4.4012 9.5443 -2.3882 16 7 3.8256 10.3310 -1.5037 17 14 5.3642 10.2827 -3.8083 18 1 4.4553 10.5010 -4.9621 19 1 5.9500 11.5807 -3.3872 20 1 6.4527 9.3536 -4.2044 21 6 3.3963 6.1855 -0.9735 22 6 3.6287 1.1534 0.0059 23 7 4.2825 0.0203 0.0062 24 6 3.6483 -1.1578 0.0015 25 6 4.3694 -2.3639 0.0025 26 6 3.7031 -3.5510 -0.0019 27 6 2.3103 -3.5944 -0.0068 28 6 1.5763 -2.4477 -0.0081 29 6 2.2310 -1.2041 -0.0044 30 1 -0.3633 0.1136 -1.0214 31 1 -0.3634 -0.9413 0.4122 32 1 -0.3633 0.8278 0.6090 33 1 3.1726 3.6116 0.2211 34 1 0.9681 5.0409 -0.8146 35 1 0.7942 4.9473 0.9545 36 1 0.9229 7.4446 -0.2994 37 1 1.5165 7.6745 1.3793 38 1 2.4500 9.2895 -0.5798 39 1 3.5903 8.6376 0.6354 40 1 3.9018 11.2942 -1.5891 41 1 4.3596 5.7045 -0.8037 42 1 2.8946 5.7248 -1.8246 43 1 4.1814 2.0812 0.0100 44 1 5.4493 -2.3491 0.0076 45 1 4.2632 -4.4744 -0.0015 46 1 1.8067 -4.5498 -0.0098 47 1 0.4974 -2.4936 -0.0116 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028694396.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:05 Heat of formation + Delta-G solvation = 24.048105 kcal Electronic energy + Delta-G solvation = -28190.038824 eV Core-core repulsion = 24337.313856 eV Total energy + Delta-G solvation = -3852.724967 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.18636 -40.66183 -39.25962 -37.90677 -36.32337 -35.41581 -34.37386 -32.25150 -31.34105 -31.30563 -29.90646 -28.87806 -27.31115 -25.78920 -25.00726 -24.47103 -22.41415 -22.08921 -21.64562 -21.16676 -19.42123 -18.88682 -18.74804 -18.09105 -17.12814 -16.85237 -16.66400 -16.54842 -16.10907 -15.62684 -15.40864 -15.37323 -15.27024 -14.87925 -14.54507 -14.34439 -14.26582 -13.88781 -13.81786 -13.53374 -13.36815 -13.14893 -13.12127 -12.83250 -12.76272 -12.73883 -12.65772 -12.42933 -12.01883 -11.84860 -11.82629 -11.57470 -11.36264 -11.24665 -11.00392 -10.73711 -10.45952 -10.16327 -9.83793 -9.24619 -8.87304 -7.77195 -5.21035 -0.82222 -0.43809 0.81844 1.46202 1.47856 1.49972 1.56443 2.05801 2.19825 2.49561 3.02838 3.14994 3.32169 3.45267 3.55201 3.57677 3.64308 3.77517 3.82265 3.93367 3.99033 4.08066 4.19852 4.30883 4.41155 4.43757 4.46925 4.57532 4.66806 4.69705 4.71980 4.81343 4.92373 4.92700 4.97373 5.03650 5.06123 5.14713 5.18979 5.34225 5.39670 5.42077 5.43315 5.48452 5.50723 5.67646 5.83913 5.84329 6.32801 6.43988 6.76036 7.10493 7.11991 7.79664 8.42953 9.24571 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019004 B = 0.002148 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.028413 B =13034.426529 C =14000.880303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.044 3.956 3 C -0.221 4.221 4 C 0.565 3.435 5 O -0.560 6.560 6 N -0.712 5.712 7 C 0.146 3.854 8 C -0.095 4.095 9 H 0.097 0.903 10 C -0.121 4.121 11 C 0.151 3.849 12 N -0.629 5.629 13 C -0.238 4.238 14 H 0.079 0.921 15 C -0.069 4.069 16 N -0.948 5.948 17 Si 0.979 3.021 18 H -0.286 1.286 19 H -0.293 1.293 20 H -0.271 1.271 21 C 0.135 3.865 22 C 0.162 3.838 23 N -0.503 5.503 24 C 0.120 3.880 25 C -0.121 4.121 26 C -0.078 4.078 27 C -0.116 4.116 28 C -0.093 4.093 29 C -0.130 4.130 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.410 0.590 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.090 0.910 38 H 0.071 0.929 39 H -0.010 1.010 40 H 0.247 0.753 41 H 0.029 0.971 42 H 0.022 0.978 43 H 0.177 0.823 44 H 0.142 0.858 45 H 0.164 0.836 46 H 0.164 0.836 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.040 -30.053 6.917 31.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.035 3.965 3 C -0.226 4.226 4 C 0.353 3.647 5 O -0.441 6.441 6 N -0.364 5.364 7 C 0.022 3.978 8 C -0.114 4.114 9 H 0.115 0.885 10 C -0.160 4.160 11 C 0.026 3.974 12 N -0.355 5.355 13 C -0.367 4.367 14 H 0.096 0.904 15 C -0.261 4.261 16 N -0.598 5.598 17 Si 0.807 3.193 18 H -0.213 1.213 19 H -0.220 1.220 20 H -0.196 1.196 21 C 0.010 3.990 22 C -0.012 4.012 23 N -0.211 5.211 24 C 0.000 4.000 25 C -0.140 4.140 26 C -0.097 4.097 27 C -0.133 4.133 28 C -0.112 4.112 29 C -0.132 4.132 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.247 0.753 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.109 0.891 38 H 0.089 0.911 39 H 0.008 0.992 40 H 0.056 0.944 41 H 0.047 0.953 42 H 0.040 0.960 43 H 0.194 0.806 44 H 0.160 0.840 45 H 0.182 0.818 46 H 0.182 0.818 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.888 -29.941 6.757 31.080 hybrid contribution 0.433 1.272 -0.784 1.556 sum -4.455 -28.668 5.972 29.621 Atomic orbital electron populations 1.21155 0.87814 1.04575 1.04198 1.20948 0.98033 0.90685 0.86794 1.20736 0.95460 0.93883 1.12557 1.18084 0.86601 0.83850 0.76165 1.90713 1.14609 1.87516 1.51265 1.45890 1.11605 1.05431 1.73455 1.21256 0.94103 0.80289 1.02126 1.22298 0.96531 0.94350 0.98235 0.88525 1.22836 0.97726 0.93884 1.01574 1.21738 0.91400 0.95525 0.88727 1.44894 1.61069 1.01476 1.28042 1.19441 1.24440 0.90675 1.02141 0.90353 1.25627 1.02515 0.96472 1.01531 1.70052 1.49504 1.02722 1.37559 0.85066 0.78197 0.77484 0.78522 1.21331 1.21967 1.19588 1.21588 0.96758 0.85262 0.95377 1.23269 0.90093 0.97173 0.90648 1.67971 1.40124 0.98110 1.14895 1.19453 0.90482 0.93110 0.96998 1.21064 1.01135 0.90189 1.01595 1.21444 0.95063 0.98434 0.94774 1.21413 0.94078 0.99596 0.98259 1.21430 1.01648 0.90350 0.97738 1.18932 0.93848 0.94935 1.05481 0.89633 0.88811 0.89432 0.75308 0.92450 0.90086 0.91803 0.89144 0.91123 0.99198 0.94361 0.95291 0.96016 0.80578 0.83984 0.81836 0.81797 0.82617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.23 8.48 71.24 0.60 -1.63 16 2 C 0.04 0.96 5.99 -19.12 -0.11 0.84 16 3 C -0.22 -5.25 5.89 -20.00 -0.12 -5.37 16 4 C 0.57 14.84 7.71 86.76 0.67 15.50 16 5 O -0.56 -17.34 13.45 -3.91 -0.05 -17.39 16 6 N -0.71 -17.00 5.38 -466.05 -2.51 -19.51 16 7 C 0.15 3.89 5.00 86.38 0.43 4.32 16 8 C -0.09 -2.90 2.98 -9.61 -0.03 -2.93 16 9 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 10 C -0.12 -4.26 6.53 31.98 0.21 -4.06 16 11 C 0.15 7.36 5.89 86.85 0.51 7.87 16 12 N -0.63 -32.25 3.40 -691.22 -2.35 -34.60 16 13 C -0.24 -13.45 10.28 84.04 0.86 -12.58 16 14 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 15 C -0.07 -3.95 5.49 84.86 0.47 -3.49 16 16 N -0.95 -56.85 10.09 21.65 0.22 -56.63 16 17 Si 0.98 46.13 29.55 68.60 2.03 48.16 16 18 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 19 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 21 C 0.14 5.31 6.66 86.68 0.58 5.89 16 22 C 0.16 3.66 10.67 85.41 0.91 4.57 16 23 N -0.50 -12.37 10.30 -187.68 -1.93 -14.30 16 24 C 0.12 2.64 6.61 40.28 0.27 2.91 16 25 C -0.12 -1.98 9.97 22.34 0.22 -1.76 16 26 C -0.08 -0.78 9.94 22.05 0.22 -0.56 16 27 C -0.12 -1.05 9.96 22.05 0.22 -0.83 16 28 C -0.09 -1.21 9.32 22.34 0.21 -1.00 16 29 C -0.13 -2.58 5.74 -21.28 -0.12 -2.70 16 30 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 31 H 0.09 1.11 6.22 -2.39 -0.01 1.10 16 32 H 0.09 1.96 5.94 -2.39 -0.01 1.95 16 33 H 0.41 8.18 6.46 -92.71 -0.60 7.59 16 34 H 0.06 1.74 8.01 -2.38 -0.02 1.72 16 35 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 36 H 0.06 2.25 8.05 -2.39 -0.02 2.23 16 37 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 38 H 0.07 3.97 5.87 -2.39 -0.01 3.96 16 39 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 40 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 41 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.02 0.87 7.73 -2.39 -0.02 0.86 16 43 H 0.18 3.13 6.42 -2.91 -0.02 3.11 16 44 H 0.14 2.06 8.06 -2.91 -0.02 2.03 16 45 H 0.16 0.55 8.06 -2.91 -0.02 0.53 16 46 H 0.16 0.36 8.06 -2.91 -0.02 0.34 16 47 H 0.16 1.25 6.31 -2.91 -0.02 1.23 16 Total: -1.00 -74.39 376.77 1.80 -72.59 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.40 Total: 16.69 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 6.00 Total: 4.99 kcal Atomic # 7 Polarization: -118.46 SS G_CDS: -6.57 Total: -125.03 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.05 Total: -17.39 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -74.39 1.80 -72.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028694396.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.636 kcal (2) G-P(sol) polarization free energy of solvation -74.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds