Wall clock time and date at job start Tue Mar 31 2020 22:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99734 * 2 1 4 4 H 1.48500 * 109.47276 * 240.00058 * 3 2 1 5 5 H 1.48510 * 109.47223 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46967 * 120.00055 * 3 2 1 7 7 C 1.38805 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00403 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99931 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64824 * 359.97438 * 9 7 2 11 11 C 1.54912 * 104.83254 * 155.90710 * 10 9 7 12 12 C 1.55152 * 101.58161 * 37.00462 * 11 10 9 13 13 H 1.08998 * 110.72122 * 83.04162 * 12 11 10 14 14 C 1.52999 * 110.72100 * 206.13702 * 12 11 10 15 15 N 1.46498 * 109.47507 * 182.56258 * 14 12 11 16 16 C 1.34778 * 120.00215 * 180.02562 * 15 14 12 17 17 O 1.21728 * 119.99611 * 359.97438 * 16 15 14 18 18 C 1.46392 * 120.00021 * 179.97438 * 16 15 14 19 19 N 1.37637 * 126.32802 * 0.13955 * 18 16 15 20 20 H 0.96993 * 125.54885 * 0.04255 * 19 18 16 21 21 C 1.35648 * 108.89785 * 180.30578 * 19 18 16 22 22 C 1.35121 * 109.21936 * 359.73529 * 21 19 18 23 23 C 1.39092 * 126.32645 * 179.97438 * 18 16 15 24 24 C 1.48183 * 126.63510 * 359.96663 * 23 18 16 25 25 C 1.39446 * 120.12741 * 309.98558 * 24 23 18 26 26 C 1.37989 * 119.86688 * 180.23123 * 25 24 23 27 27 C 1.38348 * 120.12920 * 359.51336 * 26 25 24 28 28 C 1.38346 * 120.26383 * 0.23633 * 27 26 25 29 29 C 1.37985 * 120.13302 * 359.97438 * 28 27 26 30 30 C 1.47318 * 125.61349 * 180.19489 * 9 7 2 31 31 H 0.97000 * 120.00234 * 359.97438 * 1 2 3 32 32 H 1.08990 * 110.36781 * 37.06199 * 10 9 7 33 33 H 1.09004 * 110.45487 * 274.78921 * 10 9 7 34 34 H 1.09006 * 110.99898 * 278.93239 * 11 10 9 35 35 H 1.08997 * 111.03972 * 155.09508 * 11 10 9 36 36 H 1.08995 * 109.47352 * 62.55754 * 14 12 11 37 37 H 1.09008 * 109.47093 * 302.56096 * 14 12 11 38 38 H 0.97000 * 119.99983 * 359.97438 * 15 14 12 39 39 H 1.07992 * 125.38569 * 179.73452 * 21 19 18 40 40 H 1.08001 * 126.09987 * 180.02562 * 22 21 19 41 41 H 1.08004 * 120.07105 * 0.02562 * 25 24 23 42 42 H 1.08002 * 119.93935 * 179.79809 * 26 25 24 43 43 H 1.07995 * 119.86469 * 180.25902 * 27 26 25 44 44 H 1.08002 * 119.93048 * 180.02562 * 28 27 26 45 45 H 1.08003 * 120.06733 * 180.02562 * 29 28 27 46 46 H 1.09002 * 110.06478 * 61.68287 * 30 9 7 47 47 H 1.08997 * 109.85076 * 300.42274 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1415 -2.5332 0.0005 11 6 -0.4020 -3.9323 -0.6112 12 6 0.7785 -4.7524 -0.0271 13 1 0.5456 -5.1007 0.9791 14 6 1.1226 -5.9312 -0.9397 15 7 2.1976 -6.7206 -0.3335 16 6 2.6680 -7.8149 -0.9641 17 8 2.1994 -8.1476 -2.0372 18 6 3.7426 -8.6034 -0.3586 19 7 4.3622 -8.3494 0.8439 20 1 4.1580 -7.6109 1.4386 21 6 5.3091 -9.2966 1.0590 22 6 5.3133 -10.1645 0.0233 23 6 4.3238 -9.7496 -0.8906 24 6 3.9749 -10.4042 -2.1734 25 6 2.6437 -10.6924 -2.4727 26 6 2.3253 -11.3064 -3.6667 27 6 3.3226 -11.6269 -4.5704 28 6 4.6445 -11.3387 -4.2813 29 6 4.9756 -10.7288 -3.0886 30 6 1.9339 -3.7297 0.0030 31 1 -0.4850 0.8400 0.0004 32 1 -0.5997 -1.7588 -0.6146 33 1 -0.5282 -2.4863 1.0186 34 1 -0.3532 -3.8980 -1.6996 35 1 -1.3591 -4.3333 -0.2775 36 1 1.4496 -5.5565 -1.9096 37 1 0.2409 -6.5585 -1.0711 38 1 2.5713 -6.4553 0.5214 39 1 5.9569 -9.3487 1.9214 40 1 5.9592 -11.0234 -0.0845 41 1 1.8638 -10.4386 -1.7700 42 1 1.2951 -11.5331 -3.8983 43 1 3.0681 -12.1036 -5.5055 44 1 5.4187 -11.5909 -4.9908 45 1 6.0078 -10.5040 -2.8641 46 1 2.5284 -3.8684 0.9061 47 1 2.5618 -3.8538 -0.8793 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028923007.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:24 Heat of formation + Delta-G solvation = 58.973645 kcal Electronic energy + Delta-G solvation = -28295.594916 eV Core-core repulsion = 24444.384434 eV Total energy + Delta-G solvation = -3851.210482 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.54665 -39.19665 -38.77391 -37.60293 -34.76775 -32.83622 -32.43020 -30.89859 -30.47363 -29.70855 -28.87474 -28.01498 -25.63792 -24.01816 -23.07686 -22.51697 -21.87481 -20.71403 -20.28983 -19.88698 -19.37746 -18.74876 -16.91175 -16.66796 -16.00410 -15.92636 -15.46793 -15.04889 -15.00198 -14.73035 -14.54205 -13.99645 -13.90135 -13.72718 -13.56496 -13.33598 -12.98837 -12.94386 -12.73699 -12.56879 -12.36031 -11.81829 -11.74995 -11.54707 -11.18774 -11.04286 -10.99870 -10.82615 -10.50909 -10.23121 -10.12128 -10.03708 -9.83149 -9.57583 -9.47035 -9.09038 -8.82816 -8.69135 -8.67111 -8.10274 -6.88677 -5.69569 -3.11659 0.96350 1.50367 1.60070 2.53466 2.82409 3.13322 3.30712 3.37273 3.41584 3.42930 3.89726 4.44552 4.63395 4.74207 4.86333 4.94315 5.01720 5.06218 5.16178 5.17649 5.19555 5.33948 5.47607 5.49560 5.53615 5.61218 5.64711 5.82131 5.87093 6.01261 6.02782 6.06347 6.10571 6.28577 6.33126 6.35182 6.46842 6.48363 6.53599 6.56097 6.62873 6.65667 6.74009 6.83834 7.04163 7.09708 7.46109 7.47172 7.57201 7.81328 8.15528 8.32077 9.17643 9.78320 10.42975 11.34299 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016534 B = 0.002253 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.062276 B =12423.174061 C =12978.663223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.011 4.011 3 Si 0.915 3.085 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.286 1.286 7 C -0.225 4.225 8 H 0.076 0.924 9 N -0.604 5.604 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.075 0.925 14 C 0.134 3.866 15 N -0.726 5.726 16 C 0.581 3.419 17 O -0.519 6.519 18 C -0.038 4.038 19 N -0.538 5.538 20 H 0.419 0.581 21 C 0.024 3.976 22 C -0.197 4.197 23 C -0.046 4.046 24 C -0.017 4.017 25 C -0.063 4.063 26 C -0.126 4.126 27 C -0.121 4.121 28 C -0.130 4.130 29 C -0.105 4.105 30 C 0.141 3.859 31 H 0.253 0.747 32 H 0.108 0.892 33 H 0.012 0.988 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.393 0.607 39 H 0.173 0.827 40 H 0.145 0.855 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.016 0.984 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.854 -23.773 0.098 25.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.745 3.255 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.353 4.353 8 H 0.094 0.906 9 N -0.330 5.330 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.134 4.134 13 H 0.093 0.907 14 C 0.011 3.989 15 N -0.377 5.377 16 C 0.368 3.632 17 O -0.394 6.394 18 C -0.152 4.152 19 N -0.133 5.133 20 H 0.257 0.743 21 C -0.111 4.111 22 C -0.221 4.221 23 C -0.055 4.055 24 C -0.018 4.018 25 C -0.082 4.082 26 C -0.144 4.144 27 C -0.139 4.139 28 C -0.148 4.148 29 C -0.123 4.123 30 C 0.015 3.985 31 H 0.064 0.936 32 H 0.125 0.875 33 H 0.030 0.970 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.227 0.773 39 H 0.190 0.810 40 H 0.162 0.838 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.034 0.966 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 7.378 -23.602 -0.608 24.735 hybrid contribution 0.686 1.432 0.940 1.845 sum 8.064 -22.170 0.332 23.593 Atomic orbital electron populations 1.69780 1.04897 1.24964 1.57428 1.24790 0.95744 0.97752 1.02331 0.86147 0.78417 0.82994 0.77897 1.21109 1.21501 1.21241 1.19022 0.90446 0.82505 1.43368 0.90633 1.44563 1.01951 0.99636 1.86877 1.21930 0.84616 0.92541 0.98190 1.23006 0.95446 0.98542 1.00404 1.22452 0.98407 0.94029 0.98549 0.90701 1.21484 0.88935 0.91496 0.96941 1.45997 1.39474 1.27715 1.24465 1.16986 0.81321 0.80144 0.84778 1.90889 1.58704 1.69393 1.20448 1.20533 1.02930 1.01575 0.90112 1.42001 1.29394 1.24398 1.17550 0.74323 1.21915 0.95760 0.91725 1.01741 1.20894 1.02923 1.02849 0.95433 1.18558 0.97639 0.94386 0.94891 1.18079 0.93290 0.98235 0.92202 1.21106 0.95203 0.95131 0.96722 1.21032 0.99139 0.99821 0.94383 1.21139 0.93126 1.00455 0.99188 1.20969 0.96382 1.00394 0.97067 1.21114 0.98670 0.98842 0.93706 1.21379 0.93448 0.86090 0.97575 0.93617 0.87481 0.97034 0.91748 0.92064 0.90976 0.91386 0.77350 0.81019 0.83751 0.86326 0.86339 0.86528 0.86351 0.86274 0.96641 0.95725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.69 10.09 55.49 0.56 -26.13 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 3 Si 0.92 21.94 29.55 -169.99 -5.02 16.92 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.23 -6.23 10.28 -15.06 -0.15 -6.39 16 8 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 9 N -0.60 -15.23 3.40 -169.83 -0.58 -15.81 16 10 C 0.15 3.62 5.89 -2.53 -0.01 3.60 16 11 C -0.13 -2.45 6.54 -24.58 -0.16 -2.61 16 12 C -0.12 -1.85 2.98 -88.79 -0.26 -2.12 16 13 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 14 C 0.13 1.94 5.00 -4.04 -0.02 1.92 16 15 N -0.73 -9.13 5.43 -61.71 -0.33 -9.47 16 16 C 0.58 8.16 7.76 -12.98 -0.10 8.06 16 17 O -0.52 -8.82 13.40 5.16 0.07 -8.75 16 18 C -0.04 -0.45 7.07 -81.66 -0.58 -1.03 16 19 N -0.54 -4.52 5.98 -9.24 -0.06 -4.57 16 20 H 0.42 2.44 8.18 -40.82 -0.33 2.11 16 21 C 0.02 0.18 11.86 -16.97 -0.20 -0.02 16 22 C -0.20 -1.84 10.73 -39.67 -0.43 -2.26 16 23 C -0.05 -0.56 5.67 -104.47 -0.59 -1.15 16 24 C -0.02 -0.23 5.28 -104.91 -0.55 -0.78 16 25 C -0.06 -0.84 7.63 -39.22 -0.30 -1.14 16 26 C -0.13 -1.47 10.03 -39.63 -0.40 -1.87 16 27 C -0.12 -1.28 10.04 -39.50 -0.40 -1.68 16 28 C -0.13 -1.36 10.03 -39.63 -0.40 -1.76 16 29 C -0.11 -1.21 9.74 -39.22 -0.38 -1.59 16 30 C 0.14 2.80 6.66 -2.90 -0.02 2.78 16 31 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.11 2.89 5.87 -51.93 -0.30 2.58 16 33 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 1.17 8.00 -51.93 -0.42 0.75 16 37 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 38 H 0.39 4.04 7.53 -40.82 -0.31 3.73 16 39 H 0.17 0.66 8.06 -52.49 -0.42 0.23 16 40 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 41 H 0.12 1.62 7.33 -52.48 -0.38 1.24 16 42 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 43 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 44 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 45 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 46 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.02 0.51 7.73 -51.93 -0.40 0.10 16 LS Contribution 385.72 15.07 5.81 5.81 Total: -1.00 -33.70 385.72 -11.37 -45.07 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -6.76 Total: 5.37 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -5.05 Total: -8.43 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: -0.41 Total: -55.98 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.07 Total: -8.75 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.70 -11.37 -45.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028923007.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.043 kcal (2) G-P(sol) polarization free energy of solvation -33.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds