Wall clock time and date at job start Tue Mar 31 2020 22:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99734 * 2 1 4 4 H 1.48500 * 109.47276 * 240.00058 * 3 2 1 5 5 H 1.48510 * 109.47223 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46967 * 120.00055 * 3 2 1 7 7 C 1.38805 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00403 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99931 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64824 * 359.97438 * 9 7 2 11 11 C 1.54912 * 104.83254 * 155.90710 * 10 9 7 12 12 C 1.55152 * 101.58161 * 37.00462 * 11 10 9 13 13 H 1.08998 * 110.72122 * 83.04162 * 12 11 10 14 14 C 1.52999 * 110.72100 * 206.13702 * 12 11 10 15 15 N 1.46498 * 109.47507 * 182.56258 * 14 12 11 16 16 C 1.34778 * 120.00215 * 180.02562 * 15 14 12 17 17 O 1.21728 * 119.99611 * 359.97438 * 16 15 14 18 18 C 1.46392 * 120.00021 * 179.97438 * 16 15 14 19 19 N 1.37637 * 126.32802 * 0.13955 * 18 16 15 20 20 H 0.96993 * 125.54885 * 0.04255 * 19 18 16 21 21 C 1.35648 * 108.89785 * 180.30578 * 19 18 16 22 22 C 1.35121 * 109.21936 * 359.73529 * 21 19 18 23 23 C 1.39092 * 126.32645 * 179.97438 * 18 16 15 24 24 C 1.48183 * 126.63510 * 359.96663 * 23 18 16 25 25 C 1.39446 * 120.12741 * 309.98558 * 24 23 18 26 26 C 1.37989 * 119.86688 * 180.23123 * 25 24 23 27 27 C 1.38348 * 120.12920 * 359.51336 * 26 25 24 28 28 C 1.38346 * 120.26383 * 0.23633 * 27 26 25 29 29 C 1.37985 * 120.13302 * 359.97438 * 28 27 26 30 30 C 1.47318 * 125.61349 * 180.19489 * 9 7 2 31 31 H 0.97000 * 120.00234 * 359.97438 * 1 2 3 32 32 H 1.08990 * 110.36781 * 37.06199 * 10 9 7 33 33 H 1.09004 * 110.45487 * 274.78921 * 10 9 7 34 34 H 1.09006 * 110.99898 * 278.93239 * 11 10 9 35 35 H 1.08997 * 111.03972 * 155.09508 * 11 10 9 36 36 H 1.08995 * 109.47352 * 62.55754 * 14 12 11 37 37 H 1.09008 * 109.47093 * 302.56096 * 14 12 11 38 38 H 0.97000 * 119.99983 * 359.97438 * 15 14 12 39 39 H 1.07992 * 125.38569 * 179.73452 * 21 19 18 40 40 H 1.08001 * 126.09987 * 180.02562 * 22 21 19 41 41 H 1.08004 * 120.07105 * 0.02562 * 25 24 23 42 42 H 1.08002 * 119.93935 * 179.79809 * 26 25 24 43 43 H 1.07995 * 119.86469 * 180.25902 * 27 26 25 44 44 H 1.08002 * 119.93048 * 180.02562 * 28 27 26 45 45 H 1.08003 * 120.06733 * 180.02562 * 29 28 27 46 46 H 1.09002 * 110.06478 * 61.68287 * 30 9 7 47 47 H 1.08997 * 109.85076 * 300.42274 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1415 -2.5332 0.0005 11 6 -0.4020 -3.9323 -0.6112 12 6 0.7785 -4.7524 -0.0271 13 1 0.5456 -5.1007 0.9791 14 6 1.1226 -5.9312 -0.9397 15 7 2.1976 -6.7206 -0.3335 16 6 2.6680 -7.8149 -0.9641 17 8 2.1994 -8.1476 -2.0372 18 6 3.7426 -8.6034 -0.3586 19 7 4.3622 -8.3494 0.8439 20 1 4.1580 -7.6109 1.4386 21 6 5.3091 -9.2966 1.0590 22 6 5.3133 -10.1645 0.0233 23 6 4.3238 -9.7496 -0.8906 24 6 3.9749 -10.4042 -2.1734 25 6 2.6437 -10.6924 -2.4727 26 6 2.3253 -11.3064 -3.6667 27 6 3.3226 -11.6269 -4.5704 28 6 4.6445 -11.3387 -4.2813 29 6 4.9756 -10.7288 -3.0886 30 6 1.9339 -3.7297 0.0030 31 1 -0.4850 0.8400 0.0004 32 1 -0.5997 -1.7588 -0.6146 33 1 -0.5282 -2.4863 1.0186 34 1 -0.3532 -3.8980 -1.6996 35 1 -1.3591 -4.3333 -0.2775 36 1 1.4496 -5.5565 -1.9096 37 1 0.2409 -6.5585 -1.0711 38 1 2.5713 -6.4553 0.5214 39 1 5.9569 -9.3487 1.9214 40 1 5.9592 -11.0234 -0.0845 41 1 1.8638 -10.4386 -1.7700 42 1 1.2951 -11.5331 -3.8983 43 1 3.0681 -12.1036 -5.5055 44 1 5.4187 -11.5909 -4.9908 45 1 6.0078 -10.5040 -2.8641 46 1 2.5284 -3.8684 0.9061 47 1 2.5618 -3.8538 -0.8793 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028923007.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:23 Heat of formation + Delta-G solvation = 38.677744 kcal Electronic energy + Delta-G solvation = -28296.475012 eV Core-core repulsion = 24444.384434 eV Total energy + Delta-G solvation = -3852.090579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.31594 -40.31652 -39.60053 -39.13401 -36.12304 -34.40762 -33.43450 -31.88638 -31.70848 -30.91950 -30.04716 -29.25664 -27.31743 -25.49983 -24.09497 -23.34616 -22.85955 -22.05460 -21.39242 -21.31168 -20.24306 -19.77364 -18.83822 -17.52880 -17.31358 -16.88276 -16.65764 -16.47786 -16.13385 -15.84879 -15.60306 -15.51496 -14.90198 -14.83588 -14.40083 -14.30812 -14.24162 -14.09852 -13.75586 -13.65729 -13.56858 -13.39509 -13.15547 -13.12758 -12.84271 -12.66864 -12.07415 -12.02362 -11.92269 -11.86359 -11.85259 -11.62380 -11.42607 -11.12343 -10.75360 -10.27560 -10.19748 -9.69325 -9.40274 -8.93326 -8.90566 -7.79379 -5.23752 0.09364 0.63385 0.77942 1.44783 1.47791 1.54239 1.83222 2.03498 2.23226 2.33255 2.47790 3.03650 3.29980 3.58614 3.74407 3.87397 3.94024 3.97439 4.05211 4.13622 4.19971 4.33300 4.35493 4.41105 4.44856 4.62159 4.66473 4.69540 4.76256 4.79971 4.83254 4.87266 5.00995 5.10163 5.16852 5.22256 5.27829 5.28603 5.37297 5.45115 5.57590 5.63791 5.69276 5.71863 5.80637 5.80925 5.91857 6.20963 6.29992 6.43826 6.59143 7.09137 7.13681 7.76782 8.40155 9.22287 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016534 B = 0.002253 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.062276 B =12423.174061 C =12978.663223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.068 4.068 3 Si 0.980 3.020 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.079 0.921 9 N -0.628 5.628 10 C 0.152 3.848 11 C -0.123 4.123 12 C -0.093 4.093 13 H 0.098 0.902 14 C 0.148 3.852 15 N -0.717 5.717 16 C 0.579 3.421 17 O -0.557 6.557 18 C -0.069 4.069 19 N -0.527 5.527 20 H 0.432 0.568 21 C 0.052 3.948 22 C -0.215 4.215 23 C -0.062 4.062 24 C -0.037 4.037 25 C -0.084 4.084 26 C -0.139 4.139 27 C -0.126 4.126 28 C -0.132 4.132 29 C -0.116 4.116 30 C 0.138 3.862 31 H 0.247 0.753 32 H 0.070 0.930 33 H -0.008 1.008 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.051 0.949 37 H 0.077 0.923 38 H 0.406 0.594 39 H 0.217 0.783 40 H 0.160 0.840 41 H 0.102 0.898 42 H 0.129 0.871 43 H 0.142 0.858 44 H 0.145 0.855 45 H 0.133 0.867 46 H 0.031 0.969 47 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.864 -25.299 0.994 27.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.260 4.260 3 Si 0.808 3.192 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.203 1.203 7 C -0.370 4.370 8 H 0.097 0.903 9 N -0.355 5.355 10 C 0.027 3.973 11 C -0.162 4.162 12 C -0.112 4.112 13 H 0.116 0.884 14 C 0.024 3.976 15 N -0.368 5.368 16 C 0.368 3.632 17 O -0.435 6.435 18 C -0.182 4.182 19 N -0.123 5.123 20 H 0.272 0.728 21 C -0.084 4.084 22 C -0.238 4.238 23 C -0.071 4.071 24 C -0.037 4.037 25 C -0.103 4.103 26 C -0.157 4.157 27 C -0.144 4.144 28 C -0.150 4.150 29 C -0.134 4.134 30 C 0.013 3.987 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.010 0.990 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.242 0.758 39 H 0.233 0.767 40 H 0.178 0.822 41 H 0.120 0.880 42 H 0.147 0.853 43 H 0.160 0.840 44 H 0.163 0.837 45 H 0.151 0.849 46 H 0.049 0.951 47 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 9.406 -25.137 0.322 26.841 hybrid contribution 0.129 1.839 0.678 1.964 sum 9.535 -23.298 1.001 25.193 Atomic orbital electron populations 1.70043 1.06182 1.25128 1.58482 1.25634 0.96657 1.01002 1.02712 0.85137 0.77146 0.78785 0.78171 1.20495 1.21905 1.20252 1.19406 0.90968 0.83908 1.42733 0.90306 1.44883 1.02790 1.00929 1.86860 1.21722 0.84039 0.94830 0.96675 1.22848 0.97800 0.95535 0.99991 1.22284 0.95761 0.93241 0.99942 0.88407 1.21195 0.89811 0.91045 0.95574 1.45811 1.38999 1.27192 1.24835 1.17279 0.81452 0.80123 0.84359 1.90863 1.60097 1.70385 1.22176 1.20200 1.03799 1.02232 0.92002 1.42006 1.28959 1.24894 1.16482 0.72832 1.22620 0.94305 0.89677 1.01839 1.21179 1.02931 1.04128 0.95540 1.18858 0.98492 0.94610 0.95160 1.18362 0.93473 0.98639 0.93243 1.21111 0.95296 0.96558 0.97321 1.21280 1.00261 0.99850 0.94292 1.21471 0.93004 1.00118 0.99820 1.21346 0.97097 0.99411 0.97132 1.21371 0.99110 0.98970 0.93935 1.21551 0.94717 0.84715 0.97726 0.94297 0.91175 0.99032 0.92054 0.89145 0.93010 0.90487 0.75845 0.76659 0.82192 0.87977 0.85261 0.84040 0.83702 0.84898 0.95131 0.96392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.50 10.09 21.65 0.22 -56.28 16 2 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 3 Si 0.98 45.54 29.55 68.60 2.03 47.57 16 4 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 7 C -0.24 -13.49 10.28 84.03 0.86 -12.63 16 8 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 9 N -0.63 -31.96 3.40 -691.23 -2.35 -34.31 16 10 C 0.15 7.39 5.89 86.86 0.51 7.90 16 11 C -0.12 -4.36 6.54 31.99 0.21 -4.15 16 12 C -0.09 -2.84 2.98 -9.61 -0.03 -2.87 16 13 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 14 C 0.15 4.09 5.00 86.38 0.43 4.52 16 15 N -0.72 -17.22 5.43 -467.35 -2.54 -19.76 16 16 C 0.58 16.21 7.76 86.36 0.67 16.88 16 17 O -0.56 -19.48 13.40 -4.44 -0.06 -19.54 16 18 C -0.07 -1.60 7.07 40.56 0.29 -1.31 16 19 N -0.53 -7.53 5.98 -183.14 -1.10 -8.63 16 20 H 0.43 3.76 8.18 -92.71 -0.76 3.00 16 21 C 0.05 0.59 11.86 83.38 0.99 1.58 16 22 C -0.21 -3.54 10.73 22.21 0.24 -3.30 16 23 C -0.06 -1.47 5.67 -19.77 -0.11 -1.58 16 24 C -0.04 -0.95 5.28 -20.05 -0.11 -1.06 16 25 C -0.08 -2.32 7.63 22.50 0.17 -2.15 16 26 C -0.14 -3.30 10.03 22.24 0.22 -3.07 16 27 C -0.13 -2.55 10.04 22.32 0.22 -2.33 16 28 C -0.13 -2.59 10.03 22.24 0.22 -2.37 16 29 C -0.12 -2.58 9.74 22.50 0.22 -2.36 16 30 C 0.14 5.35 6.66 86.67 0.58 5.93 16 31 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 32 H 0.07 3.94 5.87 -2.39 -0.01 3.92 16 33 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 34 H 0.06 2.22 8.05 -2.38 -0.02 2.20 16 35 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 36 H 0.05 1.67 8.00 -2.39 -0.02 1.65 16 37 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 38 H 0.41 7.51 7.53 -92.71 -0.70 6.82 16 39 H 0.22 0.48 8.06 -2.91 -0.02 0.46 16 40 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 41 H 0.10 3.02 7.33 -2.91 -0.02 3.00 16 42 H 0.13 2.60 8.06 -2.91 -0.02 2.58 16 43 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 44 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 45 H 0.13 2.45 8.06 -2.91 -0.02 2.43 16 46 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.02 0.73 7.73 -2.39 -0.02 0.71 16 Total: -1.00 -76.53 385.72 1.80 -74.73 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: -0.46 Total: 21.97 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: 6.06 Total: -5.75 kcal Atomic # 7 Polarization: -113.22 SS G_CDS: -5.76 Total: -118.98 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.06 Total: -19.54 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -76.53 1.80 -74.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028923007.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.409 kcal (2) G-P(sol) polarization free energy of solvation -76.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds