Wall clock time and date at job start Tue Mar 31 2020 22:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00356 * 2 1 4 4 H 1.48503 * 109.47311 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47271 * 300.00620 * 3 2 1 6 6 H 1.48501 * 109.46665 * 60.00215 * 3 2 1 7 7 C 1.38813 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00306 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99913 * 359.97438 * 7 2 1 10 10 C 1.47024 * 125.64618 * 359.69358 * 9 7 2 11 11 C 1.54327 * 107.26774 * 179.20447 * 10 9 7 12 12 C 1.55155 * 102.94571 * 337.80617 * 11 10 9 13 13 H 1.08997 * 111.00368 * 277.43464 * 12 11 10 14 14 C 1.52996 * 111.00532 * 153.57522 * 12 11 10 15 15 N 1.46497 * 109.47114 * 181.35298 * 14 12 11 16 16 C 1.34775 * 119.99944 * 180.02562 * 15 14 12 17 17 O 1.21729 * 120.00143 * 359.97438 * 16 15 14 18 18 C 1.46400 * 119.99763 * 179.97438 * 16 15 14 19 19 N 1.37627 * 126.33071 * 359.68688 * 18 16 15 20 20 H 0.96997 * 125.54769 * 0.02562 * 19 18 16 21 21 C 1.35643 * 108.90028 * 179.88806 * 19 18 16 22 22 C 1.35119 * 109.21925 * 0.38307 * 21 19 18 23 23 C 1.39100 * 126.32315 * 179.97438 * 18 16 15 24 24 C 1.48176 * 126.63903 * 359.93334 * 23 18 16 25 25 C 1.39456 * 120.12675 * 309.72601 * 24 23 18 26 26 C 1.37988 * 119.86638 * 179.74364 * 25 24 23 27 27 C 1.38349 * 120.12845 * 0.50151 * 26 25 24 28 28 C 1.38336 * 120.26717 * 359.77418 * 27 26 25 29 29 C 1.37986 * 120.13442 * 359.97079 * 28 27 26 30 30 C 1.47426 * 125.64875 * 180.02562 * 9 7 2 31 31 H 0.97001 * 119.99407 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.88316 * 298.61939 * 10 9 7 33 33 H 1.09002 * 109.88101 * 59.78834 * 10 9 7 34 34 H 1.08999 * 110.71564 * 219.44370 * 11 10 9 35 35 H 1.09000 * 110.86856 * 96.24526 * 11 10 9 36 36 H 1.09002 * 109.47242 * 301.35140 * 14 12 11 37 37 H 1.09002 * 109.46968 * 61.35264 * 14 12 11 38 38 H 0.97000 * 119.99896 * 359.97438 * 15 14 12 39 39 H 1.08003 * 125.38739 * 180.12804 * 21 19 18 40 40 H 1.08007 * 126.09892 * 179.76555 * 22 21 19 41 41 H 1.08000 * 120.06758 * 359.97438 * 25 24 23 42 42 H 1.07992 * 119.93517 * 180.23137 * 26 25 24 43 43 H 1.08003 * 119.86322 * 179.73966 * 27 26 25 44 44 H 1.07998 * 119.93408 * 179.97438 * 28 27 26 45 45 H 1.07998 * 120.07246 * 180.02562 * 29 28 27 46 46 H 1.09002 * 110.36518 * 322.70049 * 30 9 7 47 47 H 1.08995 * 110.36673 * 84.91158 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1376 -2.5327 0.0064 11 6 -0.4487 -4.0441 -0.0169 12 6 0.8490 -4.6570 -0.6067 13 1 0.8490 -4.5986 -1.6951 14 6 1.0361 -6.1010 -0.1371 15 7 2.2848 -6.6352 -0.6863 16 6 2.6586 -7.8990 -0.4047 17 8 1.9590 -8.5966 0.3065 18 6 3.9062 -8.4330 -0.9540 19 7 4.7883 -7.7653 -1.7726 20 1 4.6872 -6.8527 -2.0853 21 6 5.8238 -8.5901 -2.0683 22 6 5.6281 -9.7833 -1.4653 23 6 4.4162 -9.7109 -0.7496 24 6 3.8040 -10.7876 0.0637 25 6 3.3852 -10.5274 1.3682 26 6 2.8109 -11.5328 2.1190 27 6 2.6598 -12.7994 1.5835 28 6 3.0785 -13.0650 0.2921 29 6 3.6494 -12.0665 -0.4702 30 6 1.9333 -3.7312 -0.0005 31 1 -0.4849 0.8401 -0.0004 32 1 -0.5503 -2.0832 0.9095 33 1 -0.5617 -2.0533 -0.8759 34 1 -1.3017 -4.2523 -0.6628 35 1 -0.6290 -4.4190 0.9906 36 1 1.0780 -6.1265 0.9518 37 1 0.1986 -6.7069 -0.4828 38 1 2.8421 -6.0795 -1.2533 39 1 6.6686 -8.3349 -2.6909 40 1 6.2837 -10.6398 -1.5215 41 1 3.5066 -9.5401 1.7887 42 1 2.4828 -11.3315 3.1279 43 1 2.2136 -13.5842 2.1764 44 1 2.9583 -14.0559 -0.1204 45 1 3.9756 -12.2749 -1.4785 46 1 2.8303 -3.7416 -0.6198 47 1 2.1723 -4.0394 1.0172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028923008.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:26 Heat of formation + Delta-G solvation = 57.174177 kcal Electronic energy + Delta-G solvation = -28290.586842 eV Core-core repulsion = 24439.298329 eV Total energy + Delta-G solvation = -3851.288513 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.54333 -39.19609 -38.77790 -37.62182 -34.77251 -32.83208 -32.43110 -30.90127 -30.48124 -29.71559 -28.88347 -28.03578 -25.64072 -24.02752 -23.08808 -22.51857 -21.87810 -20.69915 -20.20965 -19.98626 -19.38334 -18.77853 -16.89930 -16.66133 -15.99145 -15.92161 -15.51993 -15.03347 -14.86110 -14.73008 -14.60394 -14.03774 -13.89628 -13.72220 -13.49999 -13.35484 -13.03111 -12.96254 -12.90188 -12.40975 -12.35676 -12.05183 -11.79187 -11.44858 -11.18706 -11.04177 -10.95160 -10.86110 -10.52344 -10.22717 -10.08211 -9.96267 -9.88143 -9.71798 -9.47651 -9.09398 -8.83315 -8.66814 -8.65839 -8.10397 -6.89214 -5.76892 -3.10797 0.96314 1.49817 1.60004 2.53662 2.83292 3.13636 3.29890 3.35162 3.40376 3.43147 3.89484 4.43787 4.63632 4.74579 4.86672 4.93680 5.01384 5.05218 5.15794 5.16662 5.18676 5.35174 5.48434 5.49497 5.53494 5.60870 5.63701 5.82726 5.87119 5.99313 6.00293 6.03210 6.10363 6.27922 6.33072 6.35083 6.40445 6.47920 6.48352 6.55834 6.61375 6.63098 6.74176 6.83753 7.03852 7.10304 7.47036 7.50452 7.58274 7.77537 8.15116 8.20377 9.16344 9.76703 10.42552 11.34842 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018637 B = 0.002248 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.001251 B =12453.216149 C =13390.651292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.230 4.230 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.134 4.134 12 C -0.118 4.118 13 H 0.079 0.921 14 C 0.135 3.865 15 N -0.725 5.725 16 C 0.581 3.419 17 O -0.519 6.519 18 C -0.038 4.038 19 N -0.537 5.537 20 H 0.420 0.580 21 C 0.024 3.976 22 C -0.197 4.197 23 C -0.046 4.046 24 C -0.017 4.017 25 C -0.064 4.064 26 C -0.125 4.125 27 C -0.121 4.121 28 C -0.130 4.130 29 C -0.106 4.106 30 C 0.143 3.857 31 H 0.252 0.748 32 H 0.043 0.957 33 H 0.047 0.953 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.394 0.606 39 H 0.173 0.827 40 H 0.145 0.855 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.032 0.968 47 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.067 -22.969 -3.562 24.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.358 4.358 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.173 4.173 12 C -0.138 4.138 13 H 0.097 0.903 14 C 0.012 3.988 15 N -0.376 5.376 16 C 0.368 3.632 17 O -0.395 6.395 18 C -0.152 4.152 19 N -0.133 5.133 20 H 0.257 0.743 21 C -0.111 4.111 22 C -0.221 4.221 23 C -0.055 4.055 24 C -0.017 4.017 25 C -0.082 4.082 26 C -0.143 4.143 27 C -0.140 4.140 28 C -0.148 4.148 29 C -0.124 4.124 30 C 0.016 3.984 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.227 0.773 39 H 0.190 0.810 40 H 0.162 0.838 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.050 0.950 47 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 8.429 -23.043 -3.071 24.728 hybrid contribution 0.685 1.763 -0.539 1.967 sum 9.115 -21.280 -3.610 23.430 Atomic orbital electron populations 1.69975 1.04891 1.24979 1.56960 1.24819 0.95742 0.97728 1.02192 0.86045 0.78657 0.83747 0.77294 1.20546 1.21732 1.21686 1.19083 0.90399 0.82424 1.43929 0.90482 1.44489 1.01759 0.99816 1.87192 1.21154 0.84274 0.88174 1.01162 1.22859 0.95381 0.99351 0.99742 1.22625 0.98751 0.92000 1.00450 0.90297 1.21418 0.84822 0.93731 0.98861 1.45983 1.25499 1.13424 1.52697 1.16985 0.83772 0.81616 0.80821 1.90885 1.53267 1.58020 1.37363 1.20530 0.95271 0.94270 1.05104 1.42007 1.18180 1.14391 1.38727 0.74274 1.21921 0.93642 0.91252 1.04292 1.20893 0.98797 0.98492 1.03938 1.18553 0.95522 0.91329 1.00103 1.18079 0.98820 0.91738 0.93093 1.21132 0.95438 0.98545 0.93066 1.21039 0.99977 0.93209 1.00053 1.21136 1.00250 0.96864 0.95709 1.20959 1.00274 0.98919 0.94696 1.21102 0.99613 0.92213 0.99499 1.21555 0.93788 0.86277 0.96731 0.93745 0.93859 0.93500 0.91929 0.92121 0.91099 0.91430 0.77252 0.81009 0.83756 0.86262 0.86307 0.86542 0.86389 0.86314 0.94983 0.96288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.79 10.31 55.49 0.57 -26.21 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 21.80 29.55 -169.99 -5.02 16.77 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.23 -6.30 10.28 -15.06 -0.15 -6.45 16 8 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 9 N -0.61 -15.08 3.39 -170.05 -0.58 -15.66 16 10 C 0.18 4.20 5.37 -3.06 -0.02 4.19 16 11 C -0.13 -2.40 6.42 -24.90 -0.16 -2.56 16 12 C -0.12 -1.89 3.11 -88.46 -0.27 -2.17 16 13 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 14 C 0.13 1.89 5.12 -4.05 -0.02 1.87 16 15 N -0.73 -9.03 5.40 -61.71 -0.33 -9.36 16 16 C 0.58 8.06 7.76 -12.98 -0.10 7.96 16 17 O -0.52 -8.69 13.43 5.16 0.07 -8.62 16 18 C -0.04 -0.45 7.07 -81.66 -0.58 -1.03 16 19 N -0.54 -4.55 5.98 -9.24 -0.06 -4.61 16 20 H 0.42 2.52 8.18 -40.82 -0.33 2.19 16 21 C 0.02 0.18 11.86 -16.98 -0.20 -0.02 16 22 C -0.20 -1.84 10.73 -39.67 -0.43 -2.27 16 23 C -0.05 -0.56 5.67 -104.47 -0.59 -1.15 16 24 C -0.02 -0.21 5.27 -104.91 -0.55 -0.77 16 25 C -0.06 -0.85 7.63 -39.22 -0.30 -1.14 16 26 C -0.12 -1.46 10.03 -39.63 -0.40 -1.86 16 27 C -0.12 -1.27 10.04 -39.50 -0.40 -1.66 16 28 C -0.13 -1.33 10.03 -39.64 -0.40 -1.73 16 29 C -0.11 -1.18 9.74 -39.22 -0.38 -1.57 16 30 C 0.14 2.77 6.41 -2.52 -0.02 2.75 16 31 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 32 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 33 H 0.05 1.23 7.38 -51.93 -0.38 0.85 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 1.03 8.04 -51.93 -0.42 0.61 16 36 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.39 4.08 7.46 -40.82 -0.30 3.78 16 39 H 0.17 0.68 8.06 -52.48 -0.42 0.25 16 40 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 41 H 0.12 1.68 7.36 -52.49 -0.39 1.29 16 42 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 43 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 44 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 45 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 46 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.02 0.39 8.01 -51.93 -0.42 -0.03 16 LS Contribution 386.52 15.07 5.82 5.82 Total: -1.00 -33.70 386.52 -11.41 -45.11 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.83 Total: 4.69 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -5.06 Total: -7.93 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: -0.39 Total: -55.84 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.07 Total: -8.62 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.70 -11.41 -45.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028923008.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.282 kcal (2) G-P(sol) polarization free energy of solvation -33.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds