Wall clock time and date at job start Tue Mar 31 2020 22:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00356 * 2 1 4 4 H 1.48503 * 109.47311 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47271 * 300.00620 * 3 2 1 6 6 H 1.48501 * 109.46665 * 60.00215 * 3 2 1 7 7 C 1.38813 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00306 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99913 * 359.97438 * 7 2 1 10 10 C 1.47024 * 125.64618 * 359.69358 * 9 7 2 11 11 C 1.54327 * 107.26774 * 179.20447 * 10 9 7 12 12 C 1.55155 * 102.94571 * 337.80617 * 11 10 9 13 13 H 1.08997 * 111.00368 * 277.43464 * 12 11 10 14 14 C 1.52996 * 111.00532 * 153.57522 * 12 11 10 15 15 N 1.46497 * 109.47114 * 181.35298 * 14 12 11 16 16 C 1.34775 * 119.99944 * 180.02562 * 15 14 12 17 17 O 1.21729 * 120.00143 * 359.97438 * 16 15 14 18 18 C 1.46400 * 119.99763 * 179.97438 * 16 15 14 19 19 N 1.37627 * 126.33071 * 359.68688 * 18 16 15 20 20 H 0.96997 * 125.54769 * 0.02562 * 19 18 16 21 21 C 1.35643 * 108.90028 * 179.88806 * 19 18 16 22 22 C 1.35119 * 109.21925 * 0.38307 * 21 19 18 23 23 C 1.39100 * 126.32315 * 179.97438 * 18 16 15 24 24 C 1.48176 * 126.63903 * 359.93334 * 23 18 16 25 25 C 1.39456 * 120.12675 * 309.72601 * 24 23 18 26 26 C 1.37988 * 119.86638 * 179.74364 * 25 24 23 27 27 C 1.38349 * 120.12845 * 0.50151 * 26 25 24 28 28 C 1.38336 * 120.26717 * 359.77418 * 27 26 25 29 29 C 1.37986 * 120.13442 * 359.97079 * 28 27 26 30 30 C 1.47426 * 125.64875 * 180.02562 * 9 7 2 31 31 H 0.97001 * 119.99407 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.88316 * 298.61939 * 10 9 7 33 33 H 1.09002 * 109.88101 * 59.78834 * 10 9 7 34 34 H 1.08999 * 110.71564 * 219.44370 * 11 10 9 35 35 H 1.09000 * 110.86856 * 96.24526 * 11 10 9 36 36 H 1.09002 * 109.47242 * 301.35140 * 14 12 11 37 37 H 1.09002 * 109.46968 * 61.35264 * 14 12 11 38 38 H 0.97000 * 119.99896 * 359.97438 * 15 14 12 39 39 H 1.08003 * 125.38739 * 180.12804 * 21 19 18 40 40 H 1.08007 * 126.09892 * 179.76555 * 22 21 19 41 41 H 1.08000 * 120.06758 * 359.97438 * 25 24 23 42 42 H 1.07992 * 119.93517 * 180.23137 * 26 25 24 43 43 H 1.08003 * 119.86322 * 179.73966 * 27 26 25 44 44 H 1.07998 * 119.93408 * 179.97438 * 28 27 26 45 45 H 1.07998 * 120.07246 * 180.02562 * 29 28 27 46 46 H 1.09002 * 110.36518 * 322.70049 * 30 9 7 47 47 H 1.08995 * 110.36673 * 84.91158 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1376 -2.5327 0.0064 11 6 -0.4487 -4.0441 -0.0169 12 6 0.8490 -4.6570 -0.6067 13 1 0.8490 -4.5986 -1.6951 14 6 1.0361 -6.1010 -0.1371 15 7 2.2848 -6.6352 -0.6863 16 6 2.6586 -7.8990 -0.4047 17 8 1.9590 -8.5966 0.3065 18 6 3.9062 -8.4330 -0.9540 19 7 4.7883 -7.7653 -1.7726 20 1 4.6872 -6.8527 -2.0853 21 6 5.8238 -8.5901 -2.0683 22 6 5.6281 -9.7833 -1.4653 23 6 4.4162 -9.7109 -0.7496 24 6 3.8040 -10.7876 0.0637 25 6 3.3852 -10.5274 1.3682 26 6 2.8109 -11.5328 2.1190 27 6 2.6598 -12.7994 1.5835 28 6 3.0785 -13.0650 0.2921 29 6 3.6494 -12.0665 -0.4702 30 6 1.9333 -3.7312 -0.0005 31 1 -0.4849 0.8401 -0.0004 32 1 -0.5503 -2.0832 0.9095 33 1 -0.5617 -2.0533 -0.8759 34 1 -1.3017 -4.2523 -0.6628 35 1 -0.6290 -4.4190 0.9906 36 1 1.0780 -6.1265 0.9518 37 1 0.1986 -6.7069 -0.4828 38 1 2.8421 -6.0795 -1.2533 39 1 6.6686 -8.3349 -2.6909 40 1 6.2837 -10.6398 -1.5215 41 1 3.5066 -9.5401 1.7887 42 1 2.4828 -11.3315 3.1279 43 1 2.2136 -13.5842 2.1764 44 1 2.9583 -14.0559 -0.1204 45 1 3.9756 -12.2749 -1.4785 46 1 2.8303 -3.7416 -0.6198 47 1 2.1723 -4.0394 1.0172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028923008.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:26 Heat of formation + Delta-G solvation = 36.838916 kcal Electronic energy + Delta-G solvation = -28291.468645 eV Core-core repulsion = 24439.298329 eV Total energy + Delta-G solvation = -3852.170316 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.30797 -40.30480 -39.59545 -39.14759 -36.10756 -34.39985 -33.42971 -31.89075 -31.70326 -30.91888 -30.05664 -29.26003 -27.30693 -25.51226 -24.09374 -23.33837 -22.84692 -21.96614 -21.46114 -21.33089 -20.24480 -19.79035 -18.79239 -17.53168 -17.25267 -16.86716 -16.65829 -16.48796 -16.05180 -15.83800 -15.61846 -15.50541 -14.98633 -14.79255 -14.43599 -14.36482 -14.16464 -14.00441 -13.84268 -13.76749 -13.64257 -13.40794 -13.13283 -13.04859 -12.78468 -12.68232 -12.01336 -11.99108 -11.94347 -11.88565 -11.85871 -11.57364 -11.49796 -11.14335 -10.73665 -10.26817 -10.18133 -9.68840 -9.39554 -8.92724 -8.92163 -7.87134 -5.22877 0.10240 0.63884 0.78682 1.44585 1.45631 1.55700 1.83756 2.05011 2.23939 2.33760 2.47528 3.04440 3.31419 3.56646 3.73970 3.88729 3.97270 3.98929 4.02748 4.14258 4.20440 4.33677 4.36105 4.40483 4.45513 4.59191 4.67227 4.70752 4.76426 4.80546 4.83192 4.87992 5.02008 5.05286 5.17537 5.22853 5.28376 5.29357 5.40894 5.43772 5.58275 5.65480 5.70033 5.72839 5.75938 5.81384 5.92795 6.18004 6.21587 6.44337 6.59492 7.08230 7.14462 7.75818 8.40197 9.23615 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018637 B = 0.002248 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.001251 B =12453.216149 C =13390.651292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.069 4.069 3 Si 0.979 3.021 4 H -0.263 1.263 5 H -0.291 1.291 6 H -0.295 1.295 7 C -0.241 4.241 8 H 0.085 0.915 9 N -0.629 5.629 10 C 0.183 3.817 11 C -0.123 4.123 12 C -0.095 4.095 13 H 0.090 0.910 14 C 0.148 3.852 15 N -0.717 5.717 16 C 0.580 3.420 17 O -0.556 6.556 18 C -0.069 4.069 19 N -0.527 5.527 20 H 0.431 0.569 21 C 0.051 3.949 22 C -0.214 4.214 23 C -0.062 4.062 24 C -0.035 4.035 25 C -0.086 4.086 26 C -0.139 4.139 27 C -0.126 4.126 28 C -0.130 4.130 29 C -0.114 4.114 30 C 0.139 3.861 31 H 0.246 0.754 32 H 0.003 0.997 33 H 0.014 0.986 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.406 0.594 39 H 0.216 0.784 40 H 0.161 0.839 41 H 0.098 0.902 42 H 0.127 0.873 43 H 0.142 0.858 44 H 0.147 0.853 45 H 0.135 0.865 46 H 0.050 0.950 47 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.104 -24.725 -5.184 27.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.262 4.262 3 Si 0.807 3.193 4 H -0.188 1.188 5 H -0.218 1.218 6 H -0.222 1.222 7 C -0.370 4.370 8 H 0.102 0.898 9 N -0.355 5.355 10 C 0.058 3.942 11 C -0.162 4.162 12 C -0.115 4.115 13 H 0.109 0.891 14 C 0.024 3.976 15 N -0.369 5.369 16 C 0.368 3.632 17 O -0.435 6.435 18 C -0.182 4.182 19 N -0.124 5.124 20 H 0.271 0.729 21 C -0.085 4.085 22 C -0.237 4.237 23 C -0.071 4.071 24 C -0.036 4.036 25 C -0.105 4.105 26 C -0.157 4.157 27 C -0.144 4.144 28 C -0.148 4.148 29 C -0.132 4.132 30 C 0.014 3.986 31 H 0.056 0.944 32 H 0.021 0.979 33 H 0.032 0.968 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.241 0.759 39 H 0.233 0.767 40 H 0.178 0.822 41 H 0.116 0.884 42 H 0.145 0.855 43 H 0.160 0.840 44 H 0.165 0.835 45 H 0.153 0.847 46 H 0.068 0.932 47 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 10.500 -24.802 -4.711 27.342 hybrid contribution 0.126 2.242 -0.029 2.246 sum 10.626 -22.560 -4.741 25.384 Atomic orbital electron populations 1.70200 1.06364 1.25186 1.58391 1.25684 0.96631 1.01154 1.02745 0.85005 0.78261 0.79404 0.76628 1.18767 1.21848 1.22220 1.19506 0.91049 0.83682 1.42726 0.89760 1.44816 1.02471 1.01226 1.86983 1.20915 0.83878 0.91742 0.97674 1.22722 0.97206 0.95019 1.01239 1.22418 0.96086 0.92226 1.00723 0.89128 1.21151 0.85910 0.92321 0.98207 1.45812 1.25093 1.13316 1.52655 1.17258 0.84188 0.81456 0.80250 1.90862 1.54597 1.58957 1.39037 1.20224 0.95672 0.94937 1.07399 1.42015 1.17649 1.14961 1.37751 0.72864 1.22616 0.93454 0.90024 1.02448 1.21179 0.98251 1.00080 1.04228 1.18853 0.96649 0.91314 1.00318 1.18348 0.99233 0.92899 0.93082 1.21101 0.97220 0.98116 0.94056 1.21261 1.00104 0.93764 1.00571 1.21462 0.99864 0.96802 0.96241 1.21349 0.99038 0.99974 0.94458 1.21368 0.99626 0.91824 1.00384 1.21734 0.95309 0.84436 0.97121 0.94449 0.97883 0.96794 0.89604 0.91157 0.92219 0.90735 0.75900 0.76740 0.82169 0.88374 0.85508 0.84034 0.83543 0.84689 0.93196 0.96618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.33 10.31 21.65 0.22 -57.10 16 2 C -0.07 -3.92 5.49 84.86 0.47 -3.46 16 3 Si 0.98 45.30 29.55 68.60 2.03 47.33 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 6 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 7 C -0.24 -13.25 10.28 84.03 0.86 -12.39 16 8 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 9 N -0.63 -31.55 3.39 -691.93 -2.35 -33.90 16 10 C 0.18 8.94 5.37 86.73 0.47 9.41 16 11 C -0.12 -4.31 6.42 31.78 0.20 -4.10 16 12 C -0.09 -2.89 3.11 -9.40 -0.03 -2.92 16 13 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 14 C 0.15 3.95 5.12 86.38 0.44 4.40 16 15 N -0.72 -16.97 5.40 -467.35 -2.52 -19.50 16 16 C 0.58 15.96 7.76 86.37 0.67 16.63 16 17 O -0.56 -19.06 13.43 -4.44 -0.06 -19.12 16 18 C -0.07 -1.58 7.07 40.57 0.29 -1.30 16 19 N -0.53 -7.62 5.98 -183.13 -1.10 -8.71 16 20 H 0.43 3.93 8.18 -92.71 -0.76 3.17 16 21 C 0.05 0.58 11.86 83.39 0.99 1.57 16 22 C -0.21 -3.52 10.73 22.21 0.24 -3.28 16 23 C -0.06 -1.46 5.67 -19.77 -0.11 -1.57 16 24 C -0.04 -0.90 5.27 -20.05 -0.11 -1.01 16 25 C -0.09 -2.40 7.63 22.50 0.17 -2.23 16 26 C -0.14 -3.32 10.03 22.24 0.22 -3.10 16 27 C -0.13 -2.48 10.04 22.32 0.22 -2.26 16 28 C -0.13 -2.43 10.03 22.23 0.22 -2.21 16 29 C -0.11 -2.42 9.74 22.50 0.22 -2.20 16 30 C 0.14 5.25 6.41 86.86 0.56 5.81 16 31 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 32 H 0.00 0.16 7.51 -2.39 -0.02 0.14 16 33 H 0.01 0.76 7.38 -2.39 -0.02 0.74 16 34 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.07 2.33 8.04 -2.39 -0.02 2.32 16 36 H 0.06 1.76 8.10 -2.39 -0.02 1.74 16 37 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.41 7.58 7.46 -92.71 -0.69 6.89 16 39 H 0.22 0.54 8.06 -2.91 -0.02 0.52 16 40 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 41 H 0.10 3.02 7.36 -2.91 -0.02 3.00 16 42 H 0.13 2.63 8.06 -2.91 -0.02 2.61 16 43 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 44 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 45 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 46 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.02 0.62 8.01 -2.39 -0.02 0.60 16 Total: -1.00 -76.83 386.52 1.76 -75.07 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -0.46 Total: 20.14 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: 6.00 Total: -4.20 kcal Atomic # 7 Polarization: -113.47 SS G_CDS: -5.75 Total: -119.21 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.06 Total: -19.12 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -76.83 1.76 -75.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028923008.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.908 kcal (2) G-P(sol) polarization free energy of solvation -76.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds