Wall clock time and date at job start Tue Mar 31 2020 22:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00159 * 2 1 4 4 H 1.48504 * 109.47112 * 274.99226 * 3 2 1 5 5 H 1.48500 * 109.47089 * 34.98545 * 3 2 1 6 6 H 1.48495 * 109.47087 * 154.98971 * 3 2 1 7 7 C 1.38808 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00475 * 185.98127 * 7 2 1 9 9 N 1.36943 * 119.99730 * 5.98125 * 7 2 1 10 10 C 1.47864 * 126.94519 * 354.11946 * 9 7 2 11 11 C 1.58439 * 104.83417 * 182.30275 * 10 9 7 12 12 H 1.08988 * 116.62654 * 159.51502 * 11 10 9 13 13 C 1.57431 * 99.61899 * 32.32129 * 11 10 9 14 14 C 1.49290 * 126.94532 * 174.11275 * 9 7 2 15 15 H 1.08998 * 116.14999 * 15.84588 * 14 9 7 16 16 C 1.56014 * 104.09727 * 246.70064 * 14 9 7 17 17 N 1.47869 * 105.10399 * 287.92371 * 16 14 9 18 18 C 1.34777 * 126.94186 * 181.98040 * 17 16 14 19 19 O 1.21599 * 119.99828 * 184.73553 * 18 17 16 20 20 C 1.47520 * 120.00269 * 4.73373 * 18 17 16 21 21 C 1.39791 * 120.07226 * 172.28205 * 20 18 17 22 22 C 1.37609 * 119.93238 * 179.74289 * 21 20 18 23 23 C 1.39217 * 120.07143 * 0.23549 * 22 21 20 24 24 N 1.39051 * 119.93250 * 180.02562 * 23 22 21 25 25 C 1.48221 * 111.00123 * 299.56473 * 24 23 22 26 26 C 1.51110 * 105.36496 * 144.89948 * 25 24 23 27 27 C 1.30969 * 109.45898 * 343.02253 * 26 25 24 28 28 C 1.48234 * 110.99926 * 53.19906 * 24 23 22 29 29 C 1.39217 * 120.13230 * 359.97438 * 23 22 21 30 30 C 1.37606 * 120.07449 * 0.02562 * 29 23 22 31 31 H 0.97004 * 120.00014 * 0.02562 * 1 2 3 32 32 H 1.09001 * 110.31732 * 300.90552 * 10 9 7 33 33 H 1.08999 * 110.31943 * 62.99422 * 10 9 7 34 34 H 1.09006 * 112.53532 * 192.40780 * 13 11 10 35 35 H 1.08997 * 112.31652 * 64.87328 * 13 11 10 36 36 H 1.09000 * 110.31963 * 169.00740 * 16 14 9 37 37 H 1.09008 * 110.39986 * 46.87263 * 16 14 9 38 38 H 1.08005 * 120.03247 * 0.02562 * 21 20 18 39 39 H 1.08007 * 119.96366 * 180.24892 * 22 21 20 40 40 H 1.09006 * 110.26493 * 263.87552 * 25 24 23 41 41 H 1.09002 * 110.26971 * 25.92036 * 25 24 23 42 42 H 1.08006 * 125.27410 * 163.04794 * 26 25 24 43 43 H 1.07993 * 125.27465 * 180.02562 * 27 26 25 44 44 H 1.09005 * 110.26437 * 334.07302 * 28 24 23 45 45 H 1.08999 * 110.26567 * 96.12382 * 28 24 23 46 46 H 1.08007 * 119.96065 * 180.02562 * 29 23 22 47 47 H 1.07998 * 120.03508 * 180.02562 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5043 2.6199 0.8028 6 1 3.5965 1.4120 0.5919 7 6 2.0102 -1.2021 0.0005 8 1 3.0857 -1.2047 0.0980 9 7 1.3311 -2.3849 -0.1225 10 6 -0.1359 -2.5693 -0.1435 11 6 -0.3462 -4.1365 -0.2438 12 1 -1.3178 -4.5198 0.0675 13 6 0.9136 -4.6233 0.5651 14 6 1.9221 -3.7486 -0.2628 15 1 2.9763 -3.8443 -0.0028 16 6 1.5246 -4.1885 -1.7059 17 7 0.0727 -4.4608 -1.6395 18 6 -0.7144 -4.9063 -2.6387 19 8 -1.9143 -5.0062 -2.4690 20 6 -0.1202 -5.2727 -3.9383 21 6 -0.9052 -5.8849 -4.9197 22 6 -0.3494 -6.2207 -6.1329 23 6 0.9945 -5.9558 -6.3817 24 7 1.5531 -6.2958 -7.6089 25 6 1.4578 -7.7552 -7.8498 26 6 1.2303 -7.9015 -9.3365 27 6 0.8382 -6.7547 -9.8329 28 6 0.7642 -5.7269 -8.7275 29 6 1.7800 -5.3502 -5.4048 30 6 1.2300 -5.0120 -4.1896 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5784 -2.1886 0.7770 33 1 -0.5685 -2.0649 -1.0075 34 1 1.0980 -5.6913 0.4482 35 1 0.8719 -4.3280 1.6134 36 1 2.0664 -5.0908 -1.9893 37 1 1.7272 -3.3872 -2.4167 38 1 -1.9481 -6.0900 -4.7276 39 1 -0.9564 -6.6900 -6.8930 40 1 2.3862 -8.2472 -7.5596 41 1 0.6181 -8.1753 -7.2961 42 1 1.3691 -8.8111 -9.9022 43 1 0.6035 -6.5720 -10.8710 44 1 -0.2708 -5.5757 -8.4210 45 1 1.2023 -4.7850 -9.0578 46 1 2.8222 -5.1456 -5.6009 47 1 1.8399 -4.5419 -3.4323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032623023.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:39 Heat of formation + Delta-G solvation = 122.617015 kcal Electronic energy + Delta-G solvation = -29264.829996 eV Core-core repulsion = 25416.379297 eV Total energy + Delta-G solvation = -3848.450699 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.90976 -40.13948 -38.38051 -37.20857 -33.86861 -33.08975 -31.76208 -30.95242 -29.47937 -28.75634 -28.65883 -28.26277 -25.45399 -24.44221 -23.30557 -22.82524 -21.34460 -20.60014 -19.80703 -19.74031 -18.99658 -17.58209 -17.41065 -16.56845 -16.06390 -15.81547 -15.35901 -14.80155 -14.63098 -14.43730 -14.05042 -14.02733 -13.69552 -13.44751 -13.29798 -13.18038 -13.00568 -12.68731 -12.57312 -12.08507 -11.98611 -11.84079 -11.67376 -11.62191 -11.44601 -11.23504 -11.03189 -10.89689 -10.64571 -10.57184 -10.19004 -10.09107 -9.95896 -9.69059 -9.54099 -9.05082 -8.77012 -8.71818 -8.66033 -8.02363 -6.95249 -5.80911 -3.15153 0.77355 1.33741 1.77622 3.00564 3.32686 3.35995 3.40734 3.43649 3.56963 3.89755 4.31618 4.39158 4.46764 4.72305 4.75182 4.85311 5.05038 5.06670 5.10219 5.14194 5.16102 5.24701 5.29209 5.33762 5.44126 5.46241 5.52211 5.55460 5.63359 5.69594 5.80667 5.96216 5.96676 6.00774 6.09233 6.12822 6.24514 6.28724 6.34502 6.35330 6.45476 6.46967 6.53586 6.62192 6.67368 7.13710 7.37224 7.48770 7.69796 8.02123 8.07041 8.53990 9.06581 9.67735 10.36889 11.31395 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015373 B = 0.002782 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.892899 B =10060.920934 C =10912.761317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.004 4.004 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.234 4.234 8 H 0.082 0.918 9 N -0.597 5.597 10 C 0.175 3.825 11 C 0.096 3.904 12 H 0.115 0.885 13 C -0.151 4.151 14 C 0.140 3.860 15 H 0.107 0.893 16 C 0.073 3.927 17 N -0.598 5.598 18 C 0.568 3.432 19 O -0.553 6.553 20 C -0.122 4.122 21 C -0.053 4.053 22 C -0.164 4.164 23 C 0.091 3.909 24 N -0.470 5.470 25 C 0.055 3.945 26 C -0.169 4.169 27 C -0.167 4.167 28 C 0.051 3.949 29 C -0.100 4.100 30 C -0.109 4.109 31 H 0.255 0.745 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.134 0.866 39 H 0.123 0.877 40 H 0.090 0.910 41 H 0.065 0.935 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.067 0.933 45 H 0.091 0.909 46 H 0.134 0.866 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.476 -16.188 -13.932 21.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.201 4.201 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.362 4.362 8 H 0.099 0.901 9 N -0.321 5.321 10 C 0.050 3.950 11 C -0.007 4.007 12 H 0.133 0.867 13 C -0.191 4.191 14 C 0.031 3.969 15 H 0.125 0.875 16 C -0.052 4.052 17 N -0.330 5.330 18 C 0.358 3.642 19 O -0.433 6.433 20 C -0.125 4.125 21 C -0.073 4.073 22 C -0.184 4.184 23 C -0.004 4.004 24 N -0.191 5.191 25 C -0.071 4.071 26 C -0.187 4.187 27 C -0.185 4.185 28 C -0.075 4.075 29 C -0.118 4.118 30 C -0.128 4.128 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.152 0.848 39 H 0.141 0.859 40 H 0.108 0.892 41 H 0.083 0.917 42 H 0.155 0.845 43 H 0.155 0.845 44 H 0.085 0.915 45 H 0.109 0.891 46 H 0.152 0.848 47 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.310 -15.753 -13.853 21.237 hybrid contribution -0.487 0.682 -0.303 0.891 sum 2.823 -15.071 -14.156 20.869 Atomic orbital electron populations 1.69918 1.05006 1.25424 1.55908 1.24851 0.95671 0.97786 1.01814 0.86111 0.78651 0.83508 0.77532 1.21580 1.21760 1.20534 1.19044 0.90937 0.82070 1.44155 0.90054 1.45220 1.01358 1.00230 1.85257 1.22400 0.84676 0.86690 1.01229 1.24916 0.97659 0.98997 0.79079 0.86693 1.24196 0.96646 0.98493 0.99736 1.23219 0.96676 0.86577 0.90444 0.87500 1.23716 0.80531 0.98887 1.02044 1.49060 1.09657 1.62977 1.11334 1.17798 0.85781 0.77553 0.83060 1.90741 1.14174 1.56137 1.82282 1.20072 0.94558 1.02796 0.95089 1.21087 1.00015 0.94656 0.91526 1.21501 0.95613 1.03382 0.97894 1.19157 0.91590 0.98311 0.91337 1.63108 1.48622 1.07303 1.00083 1.22215 1.02300 0.88392 0.94194 1.23576 1.00660 0.98828 0.95684 1.23588 1.00522 0.95143 0.99243 1.22265 0.97205 0.98692 0.89289 1.20967 1.00339 0.98452 0.92080 1.22792 0.94902 0.96913 0.98153 0.93514 0.92955 0.92953 0.91451 0.89676 0.91851 0.90058 0.84809 0.85886 0.89164 0.91719 0.84474 0.84459 0.91495 0.89072 0.84783 0.81647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.51 10.60 55.49 0.59 -25.92 16 2 C 0.00 -0.11 5.49 -17.43 -0.10 -0.21 16 3 Si 0.91 21.49 29.56 -169.99 -5.02 16.47 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.23 -6.10 10.36 -15.06 -0.16 -6.26 16 8 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.60 -13.98 3.03 -154.76 -0.47 -14.45 16 10 C 0.18 4.16 4.89 -0.29 0.00 4.16 16 11 C 0.10 1.83 5.34 -60.96 -0.33 1.51 16 12 H 0.12 2.14 8.07 -51.94 -0.42 1.72 16 13 C -0.15 -2.47 6.86 -22.10 -0.15 -2.62 16 14 C 0.14 2.49 5.47 -62.55 -0.34 2.14 16 15 H 0.11 1.67 8.14 -51.93 -0.42 1.25 16 16 C 0.07 1.20 4.23 -1.68 -0.01 1.19 16 17 N -0.60 -11.07 2.95 -157.07 -0.46 -11.53 16 18 C 0.57 10.88 7.84 -12.48 -0.10 10.78 16 19 O -0.55 -12.15 16.73 5.28 0.09 -12.06 16 20 C -0.12 -1.95 5.88 -104.95 -0.62 -2.57 16 21 C -0.05 -0.76 9.58 -39.23 -0.38 -1.13 16 22 C -0.16 -1.97 7.65 -39.45 -0.30 -2.28 16 23 C 0.09 1.09 4.90 -83.86 -0.41 0.68 16 24 N -0.47 -5.04 5.56 -171.17 -0.95 -5.99 16 25 C 0.05 0.49 6.46 -4.05 -0.03 0.46 16 26 C -0.17 -1.25 10.95 -35.82 -0.39 -1.64 16 27 C -0.17 -1.26 10.95 -35.81 -0.39 -1.65 16 28 C 0.05 0.48 6.43 -4.04 -0.03 0.45 16 29 C -0.10 -1.25 9.95 -39.45 -0.39 -1.64 16 30 C -0.11 -1.53 8.72 -39.23 -0.34 -1.87 16 31 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.05 1.36 7.62 -51.93 -0.40 0.97 16 33 H 0.05 1.45 7.54 -51.93 -0.39 1.06 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.06 0.84 6.75 -51.93 -0.35 0.49 16 37 H 0.08 1.46 6.95 -51.92 -0.36 1.10 16 38 H 0.13 1.90 7.66 -52.48 -0.40 1.49 16 39 H 0.12 1.25 7.01 -52.48 -0.37 0.88 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.58 6.75 -51.93 -0.35 0.23 16 42 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 43 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.07 0.64 6.26 -51.93 -0.32 0.31 16 45 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.13 1.48 8.06 -52.48 -0.42 1.05 16 47 H 0.17 2.25 2.84 -53.55 -0.15 2.10 16 LS Contribution 370.16 15.07 5.58 5.58 Total: -1.00 -31.83 370.16 -11.55 -43.38 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -6.44 Total: 5.02 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -4.45 Total: -0.48 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: -1.30 Total: -57.90 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.06 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.83 -11.55 -43.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032623023.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.995 kcal (2) G-P(sol) polarization free energy of solvation -31.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds