Wall clock time and date at job start Tue Mar 31 2020 22:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00159 * 2 1 4 4 H 1.48504 * 109.47112 * 274.99226 * 3 2 1 5 5 H 1.48500 * 109.47089 * 34.98545 * 3 2 1 6 6 H 1.48495 * 109.47087 * 154.98971 * 3 2 1 7 7 C 1.38808 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00475 * 185.98127 * 7 2 1 9 9 N 1.36943 * 119.99730 * 5.98125 * 7 2 1 10 10 C 1.47864 * 126.94519 * 354.11946 * 9 7 2 11 11 C 1.58439 * 104.83417 * 182.30275 * 10 9 7 12 12 H 1.08988 * 116.62654 * 159.51502 * 11 10 9 13 13 C 1.57431 * 99.61899 * 32.32129 * 11 10 9 14 14 C 1.49290 * 126.94532 * 174.11275 * 9 7 2 15 15 H 1.08998 * 116.14999 * 15.84588 * 14 9 7 16 16 C 1.56014 * 104.09727 * 246.70064 * 14 9 7 17 17 N 1.47869 * 105.10399 * 287.92371 * 16 14 9 18 18 C 1.34777 * 126.94186 * 181.98040 * 17 16 14 19 19 O 1.21599 * 119.99828 * 184.73553 * 18 17 16 20 20 C 1.47520 * 120.00269 * 4.73373 * 18 17 16 21 21 C 1.39791 * 120.07226 * 172.28205 * 20 18 17 22 22 C 1.37609 * 119.93238 * 179.74289 * 21 20 18 23 23 C 1.39217 * 120.07143 * 0.23549 * 22 21 20 24 24 N 1.39051 * 119.93250 * 180.02562 * 23 22 21 25 25 C 1.48221 * 111.00123 * 299.56473 * 24 23 22 26 26 C 1.51110 * 105.36496 * 144.89948 * 25 24 23 27 27 C 1.30969 * 109.45898 * 343.02253 * 26 25 24 28 28 C 1.48234 * 110.99926 * 53.19906 * 24 23 22 29 29 C 1.39217 * 120.13230 * 359.97438 * 23 22 21 30 30 C 1.37606 * 120.07449 * 0.02562 * 29 23 22 31 31 H 0.97004 * 120.00014 * 0.02562 * 1 2 3 32 32 H 1.09001 * 110.31732 * 300.90552 * 10 9 7 33 33 H 1.08999 * 110.31943 * 62.99422 * 10 9 7 34 34 H 1.09006 * 112.53532 * 192.40780 * 13 11 10 35 35 H 1.08997 * 112.31652 * 64.87328 * 13 11 10 36 36 H 1.09000 * 110.31963 * 169.00740 * 16 14 9 37 37 H 1.09008 * 110.39986 * 46.87263 * 16 14 9 38 38 H 1.08005 * 120.03247 * 0.02562 * 21 20 18 39 39 H 1.08007 * 119.96366 * 180.24892 * 22 21 20 40 40 H 1.09006 * 110.26493 * 263.87552 * 25 24 23 41 41 H 1.09002 * 110.26971 * 25.92036 * 25 24 23 42 42 H 1.08006 * 125.27410 * 163.04794 * 26 25 24 43 43 H 1.07993 * 125.27465 * 180.02562 * 27 26 25 44 44 H 1.09005 * 110.26437 * 334.07302 * 28 24 23 45 45 H 1.08999 * 110.26567 * 96.12382 * 28 24 23 46 46 H 1.08007 * 119.96065 * 180.02562 * 29 23 22 47 47 H 1.07998 * 120.03508 * 180.02562 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5043 2.6199 0.8028 6 1 3.5965 1.4120 0.5919 7 6 2.0102 -1.2021 0.0005 8 1 3.0857 -1.2047 0.0980 9 7 1.3311 -2.3849 -0.1225 10 6 -0.1359 -2.5693 -0.1435 11 6 -0.3462 -4.1365 -0.2438 12 1 -1.3178 -4.5198 0.0675 13 6 0.9136 -4.6233 0.5651 14 6 1.9221 -3.7486 -0.2628 15 1 2.9763 -3.8443 -0.0028 16 6 1.5246 -4.1885 -1.7059 17 7 0.0727 -4.4608 -1.6395 18 6 -0.7144 -4.9063 -2.6387 19 8 -1.9143 -5.0062 -2.4690 20 6 -0.1202 -5.2727 -3.9383 21 6 -0.9052 -5.8849 -4.9197 22 6 -0.3494 -6.2207 -6.1329 23 6 0.9945 -5.9558 -6.3817 24 7 1.5531 -6.2958 -7.6089 25 6 1.4578 -7.7552 -7.8498 26 6 1.2303 -7.9015 -9.3365 27 6 0.8382 -6.7547 -9.8329 28 6 0.7642 -5.7269 -8.7275 29 6 1.7800 -5.3502 -5.4048 30 6 1.2300 -5.0120 -4.1896 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5784 -2.1886 0.7770 33 1 -0.5685 -2.0649 -1.0075 34 1 1.0980 -5.6913 0.4482 35 1 0.8719 -4.3280 1.6134 36 1 2.0664 -5.0908 -1.9893 37 1 1.7272 -3.3872 -2.4167 38 1 -1.9481 -6.0900 -4.7276 39 1 -0.9564 -6.6900 -6.8930 40 1 2.3862 -8.2472 -7.5596 41 1 0.6181 -8.1753 -7.2961 42 1 1.3691 -8.8111 -9.9022 43 1 0.6035 -6.5720 -10.8710 44 1 -0.2708 -5.5757 -8.4210 45 1 1.2023 -4.7850 -9.0578 46 1 2.8222 -5.1456 -5.6009 47 1 1.8399 -4.5419 -3.4323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032623023.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:38 Heat of formation + Delta-G solvation = 103.466008 kcal Electronic energy + Delta-G solvation = -29265.660446 eV Core-core repulsion = 25416.379297 eV Total energy + Delta-G solvation = -3849.281149 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.01828 -41.34075 -39.67313 -38.45116 -35.59203 -34.16646 -33.25602 -32.15165 -30.90974 -30.28979 -29.48210 -29.40739 -27.12493 -25.90292 -24.50617 -23.96334 -22.52192 -21.85870 -21.29062 -20.52451 -20.32570 -19.09592 -18.29577 -18.15803 -17.52073 -16.90491 -16.72190 -16.31911 -15.82978 -15.69785 -15.58268 -15.04662 -14.85194 -14.74491 -14.68077 -14.16770 -13.93820 -13.82305 -13.67554 -13.43626 -13.23606 -13.19274 -12.98734 -12.92633 -12.83243 -12.73648 -12.48702 -12.25022 -12.18646 -12.11229 -11.98671 -11.63166 -11.51311 -11.09617 -10.70031 -10.65238 -10.09050 -9.86096 -9.52697 -9.40023 -8.89590 -7.85532 -5.20632 -0.33785 0.30438 1.22647 1.47181 1.48593 1.57393 1.71347 1.91294 2.48415 2.70977 2.77237 3.31307 3.35790 3.51771 3.66151 3.71774 3.77608 3.85498 3.89174 3.90334 3.94988 4.15766 4.22059 4.30507 4.45495 4.48442 4.50933 4.51956 4.53403 4.60273 4.67262 4.80213 4.86048 4.94109 4.97886 5.01353 5.11119 5.12923 5.21762 5.27620 5.30738 5.39376 5.42921 5.45097 5.53789 5.62174 5.65874 5.88689 6.09421 6.22744 6.57035 7.02244 7.06257 7.70914 8.41739 9.26079 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015373 B = 0.002782 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.892899 B =10060.920934 C =10912.761317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.072 4.072 3 Si 0.975 3.025 4 H -0.293 1.293 5 H -0.303 1.303 6 H -0.258 1.258 7 C -0.228 4.228 8 H 0.099 0.901 9 N -0.615 5.615 10 C 0.187 3.813 11 C 0.098 3.902 12 H 0.115 0.885 13 C -0.128 4.128 14 C 0.135 3.865 15 H 0.141 0.859 16 C 0.080 3.920 17 N -0.602 5.602 18 C 0.561 3.439 19 O -0.594 6.594 20 C -0.147 4.147 21 C -0.060 4.060 22 C -0.156 4.156 23 C 0.102 3.898 24 N -0.481 5.481 25 C 0.049 3.951 26 C -0.166 4.166 27 C -0.170 4.170 28 C 0.045 3.955 29 C -0.101 4.101 30 C -0.105 4.105 31 H 0.243 0.757 32 H 0.015 0.985 33 H -0.001 1.001 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.065 0.935 38 H 0.127 0.873 39 H 0.143 0.857 40 H 0.096 0.904 41 H 0.064 0.936 42 H 0.161 0.839 43 H 0.159 0.841 44 H 0.063 0.937 45 H 0.090 0.910 46 H 0.153 0.847 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.462 -18.680 -15.676 25.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.265 4.265 3 Si 0.804 3.196 4 H -0.221 1.221 5 H -0.231 1.231 6 H -0.182 1.182 7 C -0.356 4.356 8 H 0.117 0.883 9 N -0.340 5.340 10 C 0.061 3.939 11 C -0.005 4.005 12 H 0.133 0.867 13 C -0.167 4.167 14 C 0.029 3.971 15 H 0.158 0.842 16 C -0.043 4.043 17 N -0.333 5.333 18 C 0.353 3.647 19 O -0.478 6.478 20 C -0.150 4.150 21 C -0.079 4.079 22 C -0.176 4.176 23 C 0.007 3.993 24 N -0.202 5.202 25 C -0.076 4.076 26 C -0.184 4.184 27 C -0.188 4.188 28 C -0.081 4.081 29 C -0.119 4.119 30 C -0.123 4.123 31 H 0.052 0.948 32 H 0.033 0.967 33 H 0.017 0.983 34 H 0.124 0.876 35 H 0.103 0.897 36 H 0.128 0.872 37 H 0.083 0.917 38 H 0.145 0.855 39 H 0.161 0.839 40 H 0.114 0.886 41 H 0.082 0.918 42 H 0.179 0.821 43 H 0.176 0.824 44 H 0.081 0.919 45 H 0.108 0.892 46 H 0.171 0.829 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 6.367 -18.293 -15.604 24.873 hybrid contribution -1.385 1.382 0.145 1.962 sum 4.982 -16.912 -15.459 23.448 Atomic orbital electron populations 1.70166 1.06706 1.25120 1.58600 1.25691 0.96350 1.01271 1.03161 0.85091 0.78175 0.79405 0.76886 1.22068 1.23080 1.18240 1.19558 0.91815 0.83016 1.41250 0.88305 1.45464 1.01356 1.02070 1.85069 1.21978 0.85136 0.89774 0.97050 1.24767 0.99484 0.95415 0.80824 0.86745 1.24112 0.93432 1.00272 0.98844 1.23665 0.98529 0.83467 0.91446 0.84155 1.23695 0.79577 1.00419 1.00651 1.49138 1.10633 1.62618 1.10885 1.18378 0.85407 0.76859 0.84041 1.90703 1.15928 1.58024 1.83107 1.19920 0.95752 1.05287 0.94035 1.21116 0.99755 0.94915 0.92148 1.21641 0.95975 1.02704 0.97265 1.19331 0.91370 0.96777 0.91824 1.63165 1.48726 1.08669 0.99676 1.22316 1.02668 0.87092 0.95534 1.23762 1.00187 0.99736 0.94760 1.23721 1.00866 0.94519 0.99730 1.22344 0.96788 0.99380 0.89588 1.21166 1.01271 0.97997 0.91479 1.22751 0.93906 0.96715 0.98946 0.94786 0.96691 0.98280 0.87643 0.89741 0.87212 0.91700 0.85521 0.83931 0.88561 0.91780 0.82109 0.82379 0.91865 0.89223 0.82925 0.81305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.58 10.60 21.65 0.23 -58.35 16 2 C -0.07 -4.03 5.49 84.86 0.47 -3.57 16 3 Si 0.98 45.10 29.56 68.60 2.03 47.12 16 4 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 5 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 6 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 7 C -0.23 -11.85 10.36 84.03 0.87 -10.98 16 8 H 0.10 4.70 7.83 -2.91 -0.02 4.67 16 9 N -0.62 -28.99 3.03 -643.56 -1.95 -30.93 16 10 C 0.19 9.36 4.89 88.06 0.43 9.79 16 11 C 0.10 3.81 5.34 47.96 0.26 4.07 16 12 H 0.11 4.42 8.07 -2.39 -0.02 4.40 16 13 C -0.13 -3.86 6.86 33.59 0.23 -3.63 16 14 C 0.14 4.48 5.47 46.93 0.26 4.73 16 15 H 0.14 3.75 8.14 -2.39 -0.02 3.73 16 16 C 0.08 2.47 4.23 87.16 0.37 2.84 16 17 N -0.60 -22.19 2.95 -769.12 -2.27 -24.46 16 18 C 0.56 21.90 7.84 86.69 0.68 22.58 16 19 O -0.59 -27.25 16.73 -4.03 -0.07 -27.32 16 20 C -0.15 -4.65 5.88 -20.08 -0.12 -4.77 16 21 C -0.06 -1.68 9.58 22.50 0.22 -1.47 16 22 C -0.16 -3.51 7.65 22.36 0.17 -3.34 16 23 C 0.10 2.23 4.90 38.47 0.19 2.42 16 24 N -0.48 -9.08 5.56 -695.45 -3.87 -12.95 16 25 C 0.05 0.73 6.46 85.43 0.55 1.28 16 26 C -0.17 -1.90 10.95 25.81 0.28 -1.62 16 27 C -0.17 -2.06 10.95 25.81 0.28 -1.78 16 28 C 0.04 0.74 6.43 85.43 0.55 1.28 16 29 C -0.10 -2.28 9.95 22.36 0.22 -2.05 16 30 C -0.11 -2.77 8.72 22.50 0.20 -2.57 16 31 H 0.24 14.72 8.31 -92.71 -0.77 13.95 16 32 H 0.01 0.84 7.62 -2.39 -0.02 0.82 16 33 H 0.00 -0.06 7.54 -2.39 -0.02 -0.08 16 34 H 0.11 2.49 8.14 -2.38 -0.02 2.47 16 35 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.11 2.45 6.75 -2.39 -0.02 2.44 16 37 H 0.07 2.26 6.95 -2.38 -0.02 2.24 16 38 H 0.13 3.69 7.66 -2.91 -0.02 3.67 16 39 H 0.14 2.61 7.01 -2.91 -0.02 2.59 16 40 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.06 0.97 6.75 -2.39 -0.02 0.96 16 42 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 43 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 44 H 0.06 1.08 6.26 -2.38 -0.01 1.07 16 45 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 47 H 0.17 4.22 2.84 -3.91 -0.01 4.21 16 Total: -1.00 -74.11 370.16 1.19 -72.92 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.99 Total: 20.75 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: 6.10 Total: 13.22 kcal Atomic # 7 Polarization: -118.84 SS G_CDS: -7.85 Total: -126.69 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.07 Total: -27.32 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -74.11 1.19 -72.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032623023.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.384 kcal (2) G-P(sol) polarization free energy of solvation -74.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds