Wall clock time and date at job start Tue Mar 31 2020 23:03:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.39044 * 121.01896 * 2 1
4 4 C 1.47758 * 120.27051 * 0.04534 * 3 2 1
5 5 O 1.21561 * 120.00110 * 309.92471 * 4 3 2
6 6 N 1.34784 * 119.99630 * 129.92339 * 4 3 2
7 7 C 1.46500 * 120.00053 * 4.52093 * 6 4 3
8 8 C 1.46501 * 119.99664 * 184.51725 * 6 4 3
9 9 H 1.09000 * 110.63778 * 358.31235 * 8 6 4
10 10 C 1.55158 * 110.72043 * 234.97928 * 8 6 4
11 11 C 1.54914 * 101.57865 * 277.13949 * 10 8 6
12 12 N 1.47420 * 104.83088 * 322.99009 * 11 10 8
13 13 C 1.36942 * 125.64413 * 204.09080 * 12 11 10
14 14 H 1.08007 * 119.99309 * 180.02562 * 13 12 11
15 15 C 1.38810 * 120.00391 * 0.04565 * 13 12 11
16 16 N 1.31612 * 119.99524 * 359.97438 * 15 13 12
17 17 Si 1.86799 * 120.00015 * 179.97438 * 15 13 12
18 18 H 1.48494 * 109.47077 * 359.97438 * 17 15 13
19 19 H 1.48498 * 109.47151 * 120.00167 * 17 15 13
20 20 H 1.48505 * 109.46921 * 239.99834 * 17 15 13
21 21 C 1.47019 * 108.70568 * 24.13052 * 12 11 10
22 22 C 1.40565 * 119.45920 * 180.02562 * 3 2 1
23 23 N 1.30829 * 121.54133 * 359.97438 * 22 3 2
24 24 C 1.33792 * 121.71950 * 0.02562 * 23 22 3
25 25 C 1.40532 * 120.83168 * 179.97438 * 24 23 22
26 26 C 1.36129 * 119.81723 * 180.02562 * 25 24 23
27 27 C 1.39349 * 121.09233 * 359.90809 * 26 25 24
28 28 C 1.36137 * 120.83702 * 0.13735 * 27 26 25
29 29 C 1.40491 * 121.01547 * 180.02562 * 2 1 3
30 30 H 1.09001 * 109.47390 * 95.19347 * 1 2 3
31 31 H 1.08992 * 109.47282 * 215.19775 * 1 2 3
32 32 H 1.09007 * 109.46712 * 335.19853 * 1 2 3
33 33 H 1.09001 * 109.47238 * 90.98569 * 7 6 4
34 34 H 1.08997 * 109.46813 * 210.98253 * 7 6 4
35 35 H 1.08998 * 109.46830 * 330.98416 * 7 6 4
36 36 H 1.08997 * 111.00408 * 35.21167 * 10 8 6
37 37 H 1.08997 * 111.00471 * 159.06830 * 10 8 6
38 38 H 1.08997 * 110.36242 * 204.15089 * 11 10 8
39 39 H 1.08997 * 110.45980 * 81.87560 * 11 10 8
40 40 H 0.97003 * 120.00174 * 180.02562 * 16 15 13
41 41 H 1.08992 * 109.88425 * 239.52111 * 21 12 11
42 42 H 1.09008 * 109.88387 * 118.35395 * 21 12 11
43 43 H 1.07999 * 119.22922 * 179.97438 * 22 3 2
44 44 H 1.08000 * 120.08894 * 359.74377 * 25 24 23
45 45 H 1.08001 * 119.45264 * 179.97438 * 26 25 24
46 46 H 1.08000 * 119.58052 * 180.02562 * 27 26 25
47 47 H 1.08001 * 120.18553 * 179.97438 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2236 1.1916 0.0000
4 6 1.5137 2.4875 0.0010
5 8 0.6286 2.6964 -0.8056
6 7 1.8477 3.4380 0.8964
7 6 2.9788 3.2255 1.8028
8 6 1.0795 4.6837 0.9631
9 1 0.2962 4.6931 0.2051
10 6 2.0131 5.9133 0.8084
11 6 2.5433 6.0848 2.2539
12 7 1.3962 5.7533 3.1184
13 6 1.2152 6.1862 4.4050
14 1 0.3370 5.8857 4.9572
15 6 2.1600 7.0115 4.9991
16 7 3.2301 7.3776 4.3260
17 14 1.9126 7.6026 6.7537
18 1 0.6393 7.0542 7.2858
19 1 3.0431 7.1374 7.5968
20 1 1.8584 9.0865 6.7732
21 6 0.4793 4.8803 2.3711
22 6 3.6287 1.1533 -0.0005
23 7 4.2825 0.0201 -0.0006
24 6 3.6482 -1.1579 -0.0006
25 6 4.3692 -2.3642 -0.0011
26 6 3.7028 -3.5511 -0.0016
27 6 2.3100 -3.5944 0.0003
28 6 1.5762 -2.4477 -0.0001
29 6 2.2309 -1.2040 -0.0005
30 1 -0.3634 -0.0930 -1.0234
31 1 -0.3633 -0.8397 0.5923
32 1 -0.3633 0.9330 0.4311
33 1 3.8886 3.6154 1.3462
34 1 2.7932 3.7444 2.7432
35 1 3.0962 2.1588 1.9933
36 1 2.8277 5.7008 0.1161
37 1 1.4521 6.7923 0.4912
38 1 2.8601 7.1141 2.4220
39 1 3.3697 5.3990 2.4405
40 1 3.8906 7.9541 4.7412
41 1 -0.5006 5.3512 2.2939
42 1 0.3915 3.9173 2.8744
43 1 4.1815 2.0811 -0.0010
44 1 5.4491 -2.3494 -0.0057
45 1 4.2628 -4.4746 -0.0025
46 1 1.8062 -4.5497 0.0002
47 1 0.4971 -2.4935 0.0010
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001033275385.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:03:14
Heat of formation + Delta-G solvation = 62.189160 kcal
Electronic energy + Delta-G solvation = -29515.664469 eV
Core-core repulsion = 25664.593421 eV
Total energy + Delta-G solvation = -3851.071047 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-41.33546 -39.80478 -37.68127 -36.99812 -34.79558 -34.44877 -32.29034 -30.85311
-30.60512 -29.24220 -28.26299 -27.90070 -26.26286 -24.81695 -24.11331 -23.92272
-21.37206 -21.09653 -20.21347 -19.07714 -18.19210 -17.96678 -17.06036 -16.78874
-16.38921 -15.69967 -15.19908 -14.78734 -14.70169 -14.58039 -14.36998 -14.17327
-13.94814 -13.77872 -13.29204 -13.13799 -12.81096 -12.69140 -12.34978 -12.28062
-12.19792 -11.92974 -11.88070 -11.74251 -11.67009 -11.59085 -11.10632 -10.94283
-10.85893 -10.46203 -10.34432 -10.13527 -9.93888 -9.90675 -9.59369 -9.41344
-8.97204 -8.70245 -8.48181 -8.32031 -6.89659 -5.70798 -3.12911 0.06579
0.45859 1.66367 2.45050 2.87067 3.18420 3.36505 3.42713 3.44689
3.84809 4.03752 4.25050 4.37430 4.44498 4.44991 4.56590 4.70833
4.84114 4.96301 5.17359 5.18729 5.35597 5.37365 5.40452 5.41969
5.46097 5.50244 5.63308 5.67319 5.72140 5.76120 5.80012 5.86414
5.89348 6.08178 6.16591 6.16889 6.25553 6.26773 6.33054 6.52176
6.54298 6.54715 6.65926 6.95253 7.42010 7.57085 7.59165 7.67968
7.80233 8.23502 8.30424 9.16438 9.76836 10.40753 11.32710
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.017392 B = 0.002759 C = 0.002646
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1609.594607 B =10145.358126 C =10580.382146
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.121 4.121
2 C 0.030 3.970
3 C -0.184 4.184
4 C 0.563 3.437
5 O -0.539 6.539
6 N -0.584 5.584
7 C 0.066 3.934
8 C 0.125 3.875
9 H 0.101 0.899
10 C -0.154 4.154
11 C 0.144 3.856
12 N -0.602 5.602
13 C -0.222 4.222
14 H 0.077 0.923
15 C -0.010 4.010
16 N -0.921 5.921
17 Si 0.913 3.087
18 H -0.280 1.280
19 H -0.291 1.291
20 H -0.290 1.290
21 C 0.127 3.873
22 C 0.168 3.832
23 N -0.480 5.480
24 C 0.140 3.860
25 C -0.097 4.097
26 C -0.096 4.096
27 C -0.123 4.123
28 C -0.088 4.088
29 C -0.109 4.109
30 H 0.089 0.911
31 H 0.074 0.926
32 H 0.081 0.919
33 H 0.059 0.941
34 H 0.105 0.895
35 H 0.060 0.940
36 H 0.062 0.938
37 H 0.072 0.928
38 H 0.106 0.894
39 H 0.022 0.978
40 H 0.252 0.748
41 H 0.034 0.966
42 H 0.026 0.974
43 H 0.166 0.834
44 H 0.137 0.863
45 H 0.130 0.870
46 H 0.128 0.872
47 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.357 -19.649 -9.986 22.044
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C 0.022 3.978
3 C -0.190 4.190
4 C 0.350 3.650
5 O -0.417 6.417
6 N -0.315 5.315
7 C -0.077 4.077
8 C 0.022 3.978
9 H 0.119 0.881
10 C -0.194 4.194
11 C 0.019 3.981
12 N -0.329 5.329
13 C -0.351 4.351
14 H 0.095 0.905
15 C -0.205 4.205
16 N -0.569 5.569
17 Si 0.744 3.256
18 H -0.206 1.206
19 H -0.218 1.218
20 H -0.217 1.217
21 C 0.000 4.000
22 C -0.005 4.005
23 N -0.188 5.188
24 C 0.019 3.981
25 C -0.115 4.115
26 C -0.116 4.116
27 C -0.141 4.141
28 C -0.106 4.106
29 C -0.111 4.111
30 H 0.107 0.893
31 H 0.093 0.907
32 H 0.100 0.900
33 H 0.077 0.923
34 H 0.123 0.877
35 H 0.079 0.921
36 H 0.081 0.919
37 H 0.091 0.909
38 H 0.124 0.876
39 H 0.040 0.960
40 H 0.063 0.937
41 H 0.052 0.948
42 H 0.044 0.956
43 H 0.183 0.817
44 H 0.155 0.845
45 H 0.148 0.852
46 H 0.146 0.854
47 H 0.151 0.849
Dipole moment (debyes) X Y Z Total
from point charges 0.203 -19.500 -10.220 22.017
hybrid contribution -0.787 0.330 1.006 1.320
sum -0.585 -19.170 -9.214 21.278
Atomic orbital electron populations
1.20944 0.89151 1.03981 1.03685 1.20493 0.96866 0.90557 0.89902
1.20835 0.95515 0.94283 1.08328 1.18010 0.82820 0.83138 0.81037
1.90759 1.32013 1.80381 1.38536 1.47760 1.31854 1.17054 1.34815
1.22264 0.88031 1.01302 0.96105 1.22209 0.94276 0.82629 0.98667
0.88054 1.23354 0.98788 0.96161 1.01057 1.22134 0.88839 1.03568
0.83524 1.44546 1.21178 1.55452 1.11745 1.19104 1.04915 1.23739
0.87313 0.90486 1.24770 0.96813 1.00291 0.98634 1.69798 1.11522
1.40033 1.35561 0.86014 0.77283 0.78314 0.83966 1.20575 1.21759
1.21747 1.21638 0.93917 0.94347 0.90073 1.23182 0.90007 0.96751
0.90552 1.67994 1.39355 0.97412 1.14067 1.19001 0.89584 0.92661
0.96834 1.20827 1.00533 0.90087 1.00071 1.20960 0.94511 0.98003
0.98143 1.20924 0.94124 0.98515 1.00527 1.21071 1.00243 0.91026
0.98298 1.18659 0.94008 0.93915 1.04512 0.89293 0.90699 0.89983
0.92258 0.87679 0.92143 0.91930 0.90895 0.87618 0.96017 0.93748
0.94829 0.95587 0.81669 0.84537 0.85215 0.85402 0.84928
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.33 8.68 36.01 0.31 -1.02 16
2 C 0.03 0.39 5.98 -103.47 -0.62 -0.23 16
3 C -0.18 -2.61 4.86 -104.83 -0.51 -3.12 16
4 C 0.56 9.05 6.32 -12.37 -0.08 8.97 16
5 O -0.54 -9.83 15.10 5.31 0.08 -9.75 16
6 N -0.58 -9.54 2.82 -172.98 -0.49 -10.03 16
7 C 0.07 1.02 7.18 59.85 0.43 1.45 16
8 C 0.13 2.24 3.58 -66.10 -0.24 2.00 16
9 H 0.10 1.80 7.00 -51.93 -0.36 1.44 16
10 C -0.15 -2.85 6.53 -24.58 -0.16 -3.01 16
11 C 0.14 3.25 5.01 -2.53 -0.01 3.24 16
12 N -0.60 -14.55 2.97 -170.08 -0.51 -15.06 16
13 C -0.22 -5.95 10.27 -15.06 -0.15 -6.10 16
14 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16
15 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16
16 N -0.92 -25.73 10.09 55.49 0.56 -25.17 16
17 Si 0.91 21.53 29.55 -169.99 -5.02 16.51 16
18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
21 C 0.13 2.59 6.24 -3.07 -0.02 2.57 16
22 C 0.17 2.25 8.83 -17.10 -0.15 2.10 16
23 N -0.48 -6.60 10.30 -10.67 -0.11 -6.71 16
24 C 0.14 1.78 6.61 -84.79 -0.56 1.22 16
25 C -0.10 -0.97 9.97 -39.48 -0.39 -1.36 16
26 C -0.10 -0.75 9.94 -39.93 -0.40 -1.15 16
27 C -0.12 -0.93 9.96 -39.92 -0.40 -1.33 16
28 C -0.09 -0.80 9.31 -39.47 -0.37 -1.17 16
29 C -0.11 -1.30 5.74 -106.82 -0.61 -1.91 16
30 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16
31 H 0.07 0.63 6.79 -51.93 -0.35 0.28 16
32 H 0.08 1.05 6.55 -51.93 -0.34 0.71 16
33 H 0.06 0.84 7.28 -51.93 -0.38 0.46 16
34 H 0.10 1.98 5.27 -51.93 -0.27 1.71 16
35 H 0.06 0.85 5.86 -51.93 -0.30 0.55 16
36 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16
37 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16
38 H 0.11 2.76 5.87 -51.93 -0.31 2.45 16
39 H 0.02 0.50 5.54 -51.93 -0.29 0.21 16
40 H 0.25 6.86 8.31 -40.82 -0.34 6.53 16
41 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16
42 H 0.03 0.54 8.04 -51.92 -0.42 0.12 16
43 H 0.17 1.97 6.58 -52.49 -0.35 1.63 16
44 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16
45 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16
46 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16
47 H 0.13 0.92 6.56 -52.49 -0.34 0.58 16
LS Contribution 366.86 15.07 5.53 5.53
Total: -1.00 -31.02 366.86 -10.20 -41.22
By element:
Atomic # 1 Polarization: 8.89 SS G_CDS: -6.22 Total: 2.67 kcal
Atomic # 6 Polarization: 4.82 SS G_CDS: -4.02 Total: 0.79 kcal
Atomic # 7 Polarization: -56.42 SS G_CDS: -0.54 Total: -56.97 kcal
Atomic # 8 Polarization: -9.83 SS G_CDS: 0.08 Total: -9.75 kcal
Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal
Total LS contribution 5.53 Total: 5.53 kcal
Total: -31.02 -10.20 -41.22 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001033275385.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 103.407 kcal
(2) G-P(sol) polarization free energy of solvation -31.018 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.389 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.200 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.218 kcal
(6) G-S(sol) free energy of system = (1) + (5) 62.189 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds